|
|
Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100604g2.114.mrna |
| Orig protein id | gnl|cribi|Naga_100604g2.114 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 4; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002473.1 | supercontig | CM002473.1:3473..5143 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7668 ID=rna7668|Name=rna7668|organism=Nannochloropsis gaditana|type=mRNA|length=1206bp
TCGGCGACCTACCTTCTCGTTGCTGTCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTTCCTTCCTTTCTCATTTCTCCCCT
CGCATATATTCTCACCGACCAGACCATCCTCTCCTTCTATAGTTTCTTCT
CGCTCTCTTTTGACATGACAGAAAAGGGCGAGTCTCCAAAGAGAATGCGA
CGCCGACTCGTTCCTGCTTCCACCCCTCCCCTTCCATCCTCTCGCCGCTC
TCTCACTTCCTCTCCACACTTCACTACCCTCTCCTCCCTCCCTCTCTTCC
TCCCTCCCTCTCTTACTCCCTCCTTCGCTCCTTTCCCCCCTCAGGAAGTA
TCCTTGACCGCCCTTCCCAGGACATGGTGGGGATGTTGGGGGGATGGAAT
GGAAAAGCGTCGGACACTCCCACGTCCATATCGCCGACGACGCTCCCGAC
CGCAGCCTCGACCGAACATGGCGCTGGCAAAGCAGCCGATGGCAGCTCGT
ATGCACAGTCCGCCGCTCGACTCGGTTGAAGATTCGCTCGTCATGTCCTT
TGCGAGGGGGACCATGCTTGATTCGGATAAACAATGGCACGGTGCCCTTC
TGCTGAGCCGTTGCTTATCTGGATCAAGCATAGTTGCTGCTCGCAACCGG
CCTGAAGAGCGAATCTTCTTGGGAGTCGAGAGATAGGCTGTCCGTATTGG
CTGCCGTCGGCTGCATCGTCGGCGCCTTGGCCGGTTGGGGGTGATTTTGA
GCAAAAACGGTACGTATTTTCTGGACAAGGAGGAGGATTTCTACACGATC
TGGAAGGCATTAAAGAATGCGATCGGTCCTTTAAGTACAACCTGACCACC
ACGGCAAGCGGGTGGAAGGAGGGAAGGAGGGAGGAAGGGAAGGAAGAGGG
CCAGGGCGAAGGGATGTACATACGGACAAAGGGGAGGGCCACGGCTGAGA
CTTCCATCCCCCGACTCGGGCCCCTGCGTCGACCCTCCGGTCCTCCCGCC
CTGAAGAAAAGATACACGCCGAGGGGGCAGGAGGGGGAAGGACAGTGTGG
AGGCCTGGGAAAGAGATTAAATGGAGCATGCTTGGATGGGAGAGGAACGG
AGAATATGGAGGGAGTGTGTCATGAGGTGGAAGGCTGCGGTATAGGAGGC
AAGCAGGCGGGAAAGGGGTTGGGAACAGAAAAGAAAGGAGAACATGTGAC
GGGTGG back to topprotein sequence of rna7668 >rna7668-protein ID=rna7668-protein|Name=rna7668|organism=Nannochloropsis gaditana|type=polypeptide|length=173bp
MTEKGESPKRMRRRLVPASTPPLPSSRRSLTSSPHFTTLSSLPLFLPPSL
TPSFAPFPPQEVSLTALPRTWWGCWGDGMEKRRTLPRPYRRRRSRPQPRP
NMALAKQPMAARMHSPPLDSVEDSLVMSFARGTMLDSDKQWHGALLLSRC
LSGSSIVAARNRPEERIFLGVER back to topmRNA from alignment at CM002473.1:3473..5143- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7668 ID=rna7668|Name=rna7668|organism=Nannochloropsis gaditana|type=mRNA|length=1671bp|location=Sequence derived from alignment at CM002473.1:3473..5143- (Nannochloropsis gaditana)
TCGGCGACCTACCTTCTCGTTGCTGTCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTTCCTTCCTTTCTCATTTCTCCCCT
CGCATATATTCTCACCGACCAGACCATCCTCTCCTTCTATAGTTTCTTCT
CGCTCTCTTTTGACATGACAGAAAAGGGCGAGTCTCCAAAGAGAATGCGA
CGCCGACTCGTTCCTGCTTCCACCCCTCCCCTTCCATCCTCTCGCCGCTC
TCTCACTTCCTCTCCACACTTCACTACCCTCTCCTCCCTCCCTCTCTTCC
TCCCTCCCTCTCTTACTCCCTCCTTCGCTCCTTTCCCCCCTCAGGAAGTA
TCCTTGACCGCCCTTCCCAGGACATGGTGGGGATGTTGGGGGGATGGAAT
GGAAAAGGTAAGGATGAAGGTGAAAGGACAATGGCTTTGAAAGGAGAAGA
ATCCATAGGAAAAAACACGGACCAAGATGTATGGAGTTAGAGGCTTGATC
TCCCTCCCACCCTCTTTTCTTTCCTCCCTCCTTTTCTTCCTCCCTCGTGC
CTTCAGCGTCGGACACTCCCACGTCCATATCGCCGACGACGCTCCCGACC
GCAGCCTCGACCGAACATGGCGCTGGCAAAGCAGCCGATGGCAGCTCGTA
TGCACAGTCCGCCGCTCGACTCGGTTGAAGATTCGCTCGTCATGTCCTTT
GCGAGGGGGACCATGCTTGATTCGGATAAACAATGGCACGGTGCCCTTCT
GCTGAGCCGTTGCTTATCTGGATCAAGCATAGTTGCTGCTCGCAACCGGC
CTGAAGAGCGAATCTTCTTGGGAGTCGAGAGATAGGCTGTCCGTATTGGC
TGCCGTCGGCTGCATCGTCGGCGCCTTGGCCGGTTGGGGGTAGGTTTAGG
GATAGGGGAAGCGACGGACGTCCTCCTCCCCTCTTCTCCCCCTGCCCTGC
CTCTCTCCTACCTTCAAGCCGTTAGGCAAGGTCAGGCGCTGAAAGGCCGC
TCGTGCGATGCACGGCTTTGTCGTCCCGTCCTGTGCCCTGGCTTCCACAG
GCCCACAGGATGATCGGATTCGAAGGCCCCGGGGCCTTACATCTCTTTCC
CATTCCGCTTTCCTCCCTCCCTCATCTCATTTGGCCTTCCCTCCCTTCCC
CCCTTCCTCCTGCCGCGCCCTCTTCCATGCTCCCTTCCCACCCTGACATA
CCCAGGTGATTTTGAGCAAAAACGGTACGTATTTTCTGGACAAGGAGGAG
GATTTCTACACGATCTGGAAGGCATTAAAGAATGCGATCGGTCCTTTAAG
TACAACCTGACCACCACGGCAAGCGGGTGGAAGGAGGGAAGGAGGGAGGA
AGGGAAGGAAGAGGGCCAGGGCGAAGGGATGTACATACGGACAAAGGGGA
GGGCCACGGCTGAGACTTCCATCCCCCGACTCGGGCCCCTGCGTCGACCC
TCCGGTCCTCCCGCCCTGAAGAAAAGATACACGCCGAGGGGGCAGGAGGG
GGAAGGACAGTGTGGAGGCCTGGGAAAGAGATTAAATGGAGCATGCTTGG
ATGGGAGAGGAACGGAGAATATGGAGGGAGTGTGTCATGAGGTGGAAGGC
TGCGGTATAGGAGGCAAGCAGGCGGGAAAGGGGTTGGGAACAGAAAAGAA
AGGAGAACATGTGACGGGTGG back to topCoding sequence (CDS) from alignment at CM002473.1:3473..5143- >rna7668 ID=rna7668|Name=rna7668|organism=Nannochloropsis gaditana|type=CDS|length=1044bp|location=Sequence derived from alignment at CM002473.1:3473..5143- (Nannochloropsis gaditana)
CGTCGGACACTCCCACGTCCATATCGCCGACGACGCTCCCGACCGCAGCC
TCGACCGAACATGGCGCTGGCAAAGCAGCCGATGGCAGCTCGTATGCACA
GTCCGCCGCTCGACTCGGTTGAAGATTCGCTCGTCATGTCCTTTGCGAGG
GGGACCATGCTTGATTCGGATAAACAATGGCACGGTGCCCTTCTGCTGAG
CCGTTGCTTATCTGGATCAAGCATAGTTGCTGCTCGCAACCGGCCTGAAG
AGCGAATCTTCTTGGGAGTCGAGAGATAGATGACAGAAAAGGGCGAGTCT
CCAAAGAGAATGCGACGCCGACTCGTTCCTGCTTCCACCCCTCCCCTTCC
ATCCTCTCGCCGCTCTCTCACTTCCTCTCCACACTTCACTACCCTCTCCT
CCCTCCCTCTCTTCCTCCCTCCCTCTCTTACTCCCTCCTTCGCTCCTTTC
CCCCCTCAGGAAGTATCCTTGACCGCCCTTCCCAGGACATGGTGGGGATG
TTGGGGGGATGGAATGGAAAAGCGTCGGACACTCCCACGTCCATATCGCC
GACGACGCTCCCGACCGCAGCCTCGACCGAACATGGCGCTGGCAAAGCAG
CCGATGGCAGCTCGTATGCACAGTCCGCCGCTCGACTCGGTTGAAGATTC
GCTCGTCATGTCCTTTGCGAGGGGGACCATGCTTGATTCGGATAAACAAT
GGCACGGTGCCCTTCTGCTGAGCCGTTGCTTATCTGGATCAAGCATAGTT
GCTGCTCGCAACCGGCCTGAAGAGCGAATCTTCTTGGGAGTCGAGAGATA
GATGACAGAAAAGGGCGAGTCTCCAAAGAGAATGCGACGCCGACTCGTTC
CTGCTTCCACCCCTCCCCTTCCATCCTCTCGCCGCTCTCTCACTTCCTCT
CCACACTTCACTACCCTCTCCTCCCTCCCTCTCTTCCTCCCTCCCTCTCT
TACTCCCTCCTTCGCTCCTTTCCCCCCTCAGGAAGTATCCTTGACCGCCC
TTCCCAGGACATGGTGGGGATGTTGGGGGGATGGAATGGAAAAG back to top
|