rna7667, rna7667 (mRNA) Nannochloropsis gaditana

Overview
Namerna7667
Unique Namerna7667
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1834
Alignment locationCM002473.1:3473..5143 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100604g2.113.mrna
Orig protein idgnl|cribi|Naga_100604g2.113
GbkeymRNA
Noteencoded by transcript variant 3; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:3473..5143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100604g2gene7424Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7667rna7667-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23027.1cds7647Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7667 ID=rna7667|Name=rna7667|organism=Nannochloropsis gaditana|type=mRNA|length=1834bp
TCGCCCTTCACAAAACATTTTAGCCGTCTTGGACCAAAATGTACTGCAAG
ATTGAGAATAGCACATATTTTAGTTGTTACTGTTCGCTTGCGTCGGTTCG
AAGAGCATTCTCGTATGTCTGATGTATAAATAAATCGTAAATCATTCACC
ATGTCCCCGCATTACTAGCCGCAGTTTTAAGTTGAGCAACGAGAAGATCT
CTCATGGAATCCACAAATGGGATCTTAAAATTCTTGCTTTCCGAAACTCA
TAAAGTGGCCATTTGCTCACTGCTCGACATACCGAATACCTGTGAGGTCA
ATCTGTCACAAAAGCAAATTTGCTAAGATACGAATTGCGACACGATTGTG
CGAAAGGCATTTTGGAAGGCTGTATCGGTGTGCTTCAAGCTTTATGCAAC
AAATAGCAAAACTCCTTTGCATAAGGGTTAAGTTCAGGGTTGAGGTTAGA
GTTGAGGTTAAGATTAGGAATATGAATCATGACAGACTCGTCCGTCGTCT
TCTGTTCCTCATGCCCTTCCTTCTTATCTCCACATCTTGGAGCATTGTTA
AAGCGGTTAGGCTTGAAATTTGTCAACTATGCAATTTCATAGGGAACTTT
TGTCAGGGACACAGGAGAGAGGGGGGCCGAGGGGAGAGAAGGGCGTCAAC
CCCAAGGAAGTATCCTTGACCGCCCTTCCCAGGACATGGTGGGGATGTTG
GGGGGATGGAATGGAAAAGCGTCGGACACTCCCACGTCCATATCGCCGAC
GACGCTCCCGACCGCAGCCTCGACCGAACATGGCGCTGGCAAAGCAGCCG
ATGGCAGCTCGTATGCACAGTCCGCCGCTCGACTCGGTTGAAGATTCGCT
CGTCATGTCCTTTGCGAGGGGGACCATGCTTGATTCGGATAAACAATGGC
ACGGTGCCCTTCTGCTGAGCCGTTGCTTATCTGGATCAAGCATAGTTGCT
GCTCGCAACCGGCCTGAAGAGCGAATCTTCTTGGGAGTCGAGAGATAGGC
TGTCCGTATTGGCTGCCGTCGGCTGCATCGTCGGCGCCTTGGCCGGTTGG
GGGTAGGTTTAGGGATAGGGGAAGCGACGGACGTCCTCCTCCCCTCTTCT
CCCCCTGCCCTGCCTCTCTCCTACCTTCAAGCCGTTAGGCAAGGTCAGGC
GCTGAAAGGCCGCTCGTGCGATGCACGGCTTTGTCGTCCCGTCCTGTGCC
CTGGCTTCCACAGGCCCACAGGATGATCGGATTCGAAGGCCCCGGGGCCT
TACATCTCTTTCCCATTCCGCTTTCCTCCCTCCCTCATCTCATTTGGCCT
TCCCTCCCTTCCCCCCTTCCTCCTGCCGCGCCCTCTTCCATGCTCCCTTC
CCACCCTGACATACCCAGGTGATTTTGAGCAAAAACGGTACGTATTTTCT
GGACAAGGAGGAGGATTTCTACACGATCTGGAAGGCATTAAAGAATGCGA
TCGGTCCTTTAAGTACAACCTGACCACCACGGCAAGCGGGTGGAAGGAGG
GAAGGAGGGAGGAAGGGAAGGAAGAGGGCCAGGGCGAAGGGATGTACATA
CGGACAAAGGGGAGGGCCACGGCTGAGACTTCCATCCCCCGACTCGGGCC
CCTGCGTCGACCCTCCGGTCCTCCCGCCCTGAAGAAAAGATACACGCCGA
GGGGGCAGGAGGGGGAAGGACAGTGTGGAGGCCTGGGAAAGAGATTAAAT
GGAGCATGCTTGGATGGGAGAGGAACGGAGAATATGGAGGGAGTGTGTCA
TGAGGTGGAAGGCTGCGGTATAGGAGGCAAGCAGGCGGGAAAGGGGTTGG
GAACAGAAAAGAAAGGAGAACATGTGACGGGTGG
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protein sequence of rna7667

>rna7667-protein ID=rna7667-protein|Name=rna7667|organism=Nannochloropsis gaditana|type=polypeptide|length=173bp
MTEKGESPKRMRRRLVPASTPPLPSSRRSLTSSPHFTTLSSLPLFLPPSL
TPSFAPFPPQEVSLTALPRTWWGCWGDGMEKRRTLPRPYRRRRSRPQPRP
NMALAKQPMAARMHSPPLDSVEDSLVMSFARGTMLDSDKQWHGALLLSRC
LSGSSIVAARNRPEERIFLGVER
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mRNA from alignment at CM002473.1:3473..5143-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7667 ID=rna7667|Name=rna7667|organism=Nannochloropsis gaditana|type=mRNA|length=1671bp|location=Sequence derived from alignment at CM002473.1:3473..5143- (Nannochloropsis gaditana)
TCGGCGACCTACCTTCTCGTTGCTGTCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTTCCTTCCTTTCTCATTTCTCCCCT
CGCATATATTCTCACCGACCAGACCATCCTCTCCTTCTATAGTTTCTTCT
CGCTCTCTTTTGACATGACAGAAAAGGGCGAGTCTCCAAAGAGAATGCGA
CGCCGACTCGTTCCTGCTTCCACCCCTCCCCTTCCATCCTCTCGCCGCTC
TCTCACTTCCTCTCCACACTTCACTACCCTCTCCTCCCTCCCTCTCTTCC
TCCCTCCCTCTCTTACTCCCTCCTTCGCTCCTTTCCCCCCTCAGGAAGTA
TCCTTGACCGCCCTTCCCAGGACATGGTGGGGATGTTGGGGGGATGGAAT
GGAAAAGGTAAGGATGAAGGTGAAAGGACAATGGCTTTGAAAGGAGAAGA
ATCCATAGGAAAAAACACGGACCAAGATGTATGGAGTTAGAGGCTTGATC
TCCCTCCCACCCTCTTTTCTTTCCTCCCTCCTTTTCTTCCTCCCTCGTGC
CTTCAGCGTCGGACACTCCCACGTCCATATCGCCGACGACGCTCCCGACC
GCAGCCTCGACCGAACATGGCGCTGGCAAAGCAGCCGATGGCAGCTCGTA
TGCACAGTCCGCCGCTCGACTCGGTTGAAGATTCGCTCGTCATGTCCTTT
GCGAGGGGGACCATGCTTGATTCGGATAAACAATGGCACGGTGCCCTTCT
GCTGAGCCGTTGCTTATCTGGATCAAGCATAGTTGCTGCTCGCAACCGGC
CTGAAGAGCGAATCTTCTTGGGAGTCGAGAGATAGGCTGTCCGTATTGGC
TGCCGTCGGCTGCATCGTCGGCGCCTTGGCCGGTTGGGGGTAGGTTTAGG
GATAGGGGAAGCGACGGACGTCCTCCTCCCCTCTTCTCCCCCTGCCCTGC
CTCTCTCCTACCTTCAAGCCGTTAGGCAAGGTCAGGCGCTGAAAGGCCGC
TCGTGCGATGCACGGCTTTGTCGTCCCGTCCTGTGCCCTGGCTTCCACAG
GCCCACAGGATGATCGGATTCGAAGGCCCCGGGGCCTTACATCTCTTTCC
CATTCCGCTTTCCTCCCTCCCTCATCTCATTTGGCCTTCCCTCCCTTCCC
CCCTTCCTCCTGCCGCGCCCTCTTCCATGCTCCCTTCCCACCCTGACATA
CCCAGGTGATTTTGAGCAAAAACGGTACGTATTTTCTGGACAAGGAGGAG
GATTTCTACACGATCTGGAAGGCATTAAAGAATGCGATCGGTCCTTTAAG
TACAACCTGACCACCACGGCAAGCGGGTGGAAGGAGGGAAGGAGGGAGGA
AGGGAAGGAAGAGGGCCAGGGCGAAGGGATGTACATACGGACAAAGGGGA
GGGCCACGGCTGAGACTTCCATCCCCCGACTCGGGCCCCTGCGTCGACCC
TCCGGTCCTCCCGCCCTGAAGAAAAGATACACGCCGAGGGGGCAGGAGGG
GGAAGGACAGTGTGGAGGCCTGGGAAAGAGATTAAATGGAGCATGCTTGG
ATGGGAGAGGAACGGAGAATATGGAGGGAGTGTGTCATGAGGTGGAAGGC
TGCGGTATAGGAGGCAAGCAGGCGGGAAAGGGGTTGGGAACAGAAAAGAA
AGGAGAACATGTGACGGGTGG
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Coding sequence (CDS) from alignment at CM002473.1:3473..5143-

>rna7667 ID=rna7667|Name=rna7667|organism=Nannochloropsis gaditana|type=CDS|length=1044bp|location=Sequence derived from alignment at CM002473.1:3473..5143- (Nannochloropsis gaditana)
CGTCGGACACTCCCACGTCCATATCGCCGACGACGCTCCCGACCGCAGCC
TCGACCGAACATGGCGCTGGCAAAGCAGCCGATGGCAGCTCGTATGCACA
GTCCGCCGCTCGACTCGGTTGAAGATTCGCTCGTCATGTCCTTTGCGAGG
GGGACCATGCTTGATTCGGATAAACAATGGCACGGTGCCCTTCTGCTGAG
CCGTTGCTTATCTGGATCAAGCATAGTTGCTGCTCGCAACCGGCCTGAAG
AGCGAATCTTCTTGGGAGTCGAGAGATAGATGACAGAAAAGGGCGAGTCT
CCAAAGAGAATGCGACGCCGACTCGTTCCTGCTTCCACCCCTCCCCTTCC
ATCCTCTCGCCGCTCTCTCACTTCCTCTCCACACTTCACTACCCTCTCCT
CCCTCCCTCTCTTCCTCCCTCCCTCTCTTACTCCCTCCTTCGCTCCTTTC
CCCCCTCAGGAAGTATCCTTGACCGCCCTTCCCAGGACATGGTGGGGATG
TTGGGGGGATGGAATGGAAAAGCGTCGGACACTCCCACGTCCATATCGCC
GACGACGCTCCCGACCGCAGCCTCGACCGAACATGGCGCTGGCAAAGCAG
CCGATGGCAGCTCGTATGCACAGTCCGCCGCTCGACTCGGTTGAAGATTC
GCTCGTCATGTCCTTTGCGAGGGGGACCATGCTTGATTCGGATAAACAAT
GGCACGGTGCCCTTCTGCTGAGCCGTTGCTTATCTGGATCAAGCATAGTT
GCTGCTCGCAACCGGCCTGAAGAGCGAATCTTCTTGGGAGTCGAGAGATA
GATGACAGAAAAGGGCGAGTCTCCAAAGAGAATGCGACGCCGACTCGTTC
CTGCTTCCACCCCTCCCCTTCCATCCTCTCGCCGCTCTCTCACTTCCTCT
CCACACTTCACTACCCTCTCCTCCCTCCCTCTCTTCCTCCCTCCCTCTCT
TACTCCCTCCTTCGCTCCTTTCCCCCCTCAGGAAGTATCCTTGACCGCCC
TTCCCAGGACATGGTGGGGATGTTGGGGGGATGGAATGGAAAAG
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Synonyms
Publications