Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100604g2.111.mrna |
| Orig protein id | gnl|cribi|Naga_100604g2.111 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002473.1 | supercontig | CM002473.1:3473..6045 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7665 ID=rna7665|Name=rna7665|organism=Nannochloropsis gaditana|type=mRNA|length=351bp
ATGTCAATAGCTGGAATATCGGAAGTAGAAAGCTGTGAAAAGGATTCCAC
GTGCAAGCTTAAGAATCGTTCAACCTTTTTTATTCGTGGTTTTAGCTCCA
CTGATATCCCCGATGTATCTTCTCGCTCATTCTGTGTTCGTGTCGCTGTC
AGCGCAAGCACGGGACCCACGATGTGGGTGCGAGGGTGTGGGGCTATATC
GCGGGGTTACGTAGATAGGCATGGTCATACACATGGGGCTATCGCACCCT
CACATCAATCTTGGCGGTACGAGACATCAATAACCCTACCCCTGGGATGC
TTCACGCGGCCCATTGTCTGTAGATGGTCCATGCAAGAGGACGAAGCCTA
A back to topprotein sequence of rna7665 >rna7665-protein ID=rna7665-protein|Name=rna7665|organism=Nannochloropsis gaditana|type=polypeptide|length=139bp
MQFHRELLSGTQERGGPRGEKGVNPKEVSLTALPRTWWGCWGDGMEKRRT
LPRPYRRRRSRPQPRPNMALAKQPMAARMHSPPLDSVEDSLVMSFARGTM
LDSDKQWHGALLLSRCLSGSSIVAARNRPEERIFLGVER back to topmRNA from alignment at CM002473.1:3473..6045- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7665 ID=rna7665|Name=rna7665|organism=Nannochloropsis gaditana|type=mRNA|length=2573bp|location=Sequence derived from alignment at CM002473.1:3473..6045- (Nannochloropsis gaditana)
TCGCCCTTCACAAAACATTTTAGCCGTCTTGGACCAAAATGTACTGCAAG
ATTGAGAATAGCACATATTTTAGTTGTTACTGTTCGCTTGCGTCGGTTCG
AAGAGCATTCTCGTATGTCTGATGTATAAATAAATCGTAAATCATTCACC
ATGTCCCCGCATTACTAGCCGCAGTTTTAAGTTGAGCAACGAGAAGATCT
CTCATGGAATCCACAAATGGGATCTTAAAATTCTTGCTTTCCGAAACTCA
TAAAGTGGCCATTTGCTCACTGCTCGACATACCGAATACCTGTGAGGTAA
GGCAGTTGGCAGGTCCAGTGTGAGTAACAATGTGTCGCTGTTTTAGAAAG
CCTCCTTGAATATCTCTCGTCACGAGCCATGCTCATTCCTATATTTCTTA
TTATTGATGCGAGGATTCTTCGTCTTCCCAAACACCCACAAGGTCAATCT
GTCACAAAAGCAAATTTGCTAAGATACGAATTGCGACACGATTGTGCGAA
AGGCATTTTGGAAGGCTGTATCGGTGTGCTTCAAGCTTTATGCAACAAAT
AGCAAAACTCCTTTGCATAAGGGTTAAGTTCAGGGTTGAGGTTAGAGTTG
AGGTTAAGATTAGGAATATGAATCATGACAGACTCGTCCGTCGTCTTCTG
TTCCTCATGCCCTTCCTTCTTATCTCCACATCTTGGAGCATTGTTAAAGC
GGTTAGGCTTGAAATTTGTCAACTATGCAATTTCATAGGGAACTTTTGTC
AGGGACACAGGAGAGAGGGGGGCCGAGGGGAGAGAAGGGCGTCAACCCCA
AGGTTTGTTTTGGACGGTGGCAAAGGAGGGATGGAGAAGGGAGGGAGAAA
GGAAGGTGGGACATTAGAAGGTTGTCGAAGGGTGGAATCTTACATTCTGC
CCTCGGCGACCTACCTTCTCGTTGCTGTCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTTCCTTTCTCATTTCTCCC
CTCGCATATATTCTCACCGACCAGACCATCCTCTCCTTCTATAGTTTCTT
CTCGCTCTCTTTTGACATGACAGAAAAGGGCGAGTCTCCAAAGAGAATGC
GACGCCGACTCGTTCCTGCTTCCACCCCTCCCCTTCCATCCTCTCGCCGC
TCTCTCACTTCCTCTCCACACTTCACTACCCTCTCCTCCCTCCCTCTCTT
CCTCCCTCCCTCTCTTACTCCCTCCTTCGCTCCTTTCCCCCCTCAGGAAG
TATCCTTGACCGCCCTTCCCAGGACATGGTGGGGATGTTGGGGGGATGGA
ATGGAAAAGGTAAGGATGAAGGTGAAAGGACAATGGCTTTGAAAGGAGAA
GAATCCATAGGAAAAAACACGGACCAAGATGTATGGAGTTAGAGGCTTGA
TCTCCCTCCCACCCTCTTTTCTTTCCTCCCTCCTTTTCTTCCTCCCTCGT
GCCTTCAGCGTCGGACACTCCCACGTCCATATCGCCGACGACGCTCCCGA
CCGCAGCCTCGACCGAACATGGCGCTGGCAAAGCAGCCGATGGCAGCTCG
TATGCACAGTCCGCCGCTCGACTCGGTTGAAGATTCGCTCGTCATGTCCT
TTGCGAGGGGGACCATGCTTGATTCGGATAAACAATGGCACGGTGCCCTT
CTGCTGAGCCGTTGCTTATCTGGATCAAGCATAGTTGCTGCTCGCAACCG
GCCTGAAGAGCGAATCTTCTTGGGAGTCGAGAGATAGGCTGTCCGTATTG
GCTGCCGTCGGCTGCATCGTCGGCGCCTTGGCCGGTTGGGGGTAGGTTTA
GGGATAGGGGAAGCGACGGACGTCCTCCTCCCCTCTTCTCCCCCTGCCCT
GCCTCTCTCCTACCTTCAAGCCGTTAGGCAAGGTCAGGCGCTGAAAGGCC
GCTCGTGCGATGCACGGCTTTGTCGTCCCGTCCTGTGCCCTGGCTTCCAC
AGGCCCACAGGATGATCGGATTCGAAGGCCCCGGGGCCTTACATCTCTTT
CCCATTCCGCTTTCCTCCCTCCCTCATCTCATTTGGCCTTCCCTCCCTTC
CCCCCTTCCTCCTGCCGCGCCCTCTTCCATGCTCCCTTCCCACCCTGACA
TACCCAGGTGATTTTGAGCAAAAACGGTACGTATTTTCTGGACAAGGAGG
AGGATTTCTACACGATCTGGAAGGCATTAAAGAATGCGATCGGTCCTTTA
AGTACAACCTGACCACCACGGCAAGCGGGTGGAAGGAGGGAAGGAGGGAG
GAAGGGAAGGAAGAGGGCCAGGGCGAAGGGATGTACATACGGACAAAGGG
GAGGGCCACGGCTGAGACTTCCATCCCCCGACTCGGGCCCCTGCGTCGAC
CCTCCGGTCCTCCCGCCCTGAAGAAAAGATACACGCCGAGGGGGCAGGAG
GGGGAAGGACAGTGTGGAGGCCTGGGAAAGAGATTAAATGGAGCATGCTT
GGATGGGAGAGGAACGGAGAATATGGAGGGAGTGTGTCATGAGGTGGAAG
GCTGCGGTATAGGAGGCAAGCAGGCGGGAAAGGGGTTGGGAACAGAAAAG
AAAGGAGAACATGTGACGGGTGG back to topCoding sequence (CDS) from alignment at CM002473.1:3473..6045- >rna7665 ID=rna7665|Name=rna7665|organism=Nannochloropsis gaditana|type=CDS|length=1260bp|location=Sequence derived from alignment at CM002473.1:3473..6045- (Nannochloropsis gaditana)
CGTCGGACACTCCCACGTCCATATCGCCGACGACGCTCCCGACCGCAGCC
TCGACCGAACATGGCGCTGGCAAAGCAGCCGATGGCAGCTCGTATGCACA
GTCCGCCGCTCGACTCGGTTGAAGATTCGCTCGTCATGTCCTTTGCGAGG
GGGACCATGCTTGATTCGGATAAACAATGGCACGGTGCCCTTCTGCTGAG
CCGTTGCTTATCTGGATCAAGCATAGTTGCTGCTCGCAACCGGCCTGAAG
AGCGAATCTTCTTGGGAGTCGAGAGATAGGAAGTATCCTTGACCGCCCTT
CCCAGGACATGGTGGGGATGTTGGGGGGATGGAATGGAAAAGATGCAATT
TCATAGGGAACTTTTGTCAGGGACACAGGAGAGAGGGGGGCCGAGGGGAG
AGAAGGGCGTCAACCCCAAGCGTCGGACACTCCCACGTCCATATCGCCGA
CGACGCTCCCGACCGCAGCCTCGACCGAACATGGCGCTGGCAAAGCAGCC
GATGGCAGCTCGTATGCACAGTCCGCCGCTCGACTCGGTTGAAGATTCGC
TCGTCATGTCCTTTGCGAGGGGGACCATGCTTGATTCGGATAAACAATGG
CACGGTGCCCTTCTGCTGAGCCGTTGCTTATCTGGATCAAGCATAGTTGC
TGCTCGCAACCGGCCTGAAGAGCGAATCTTCTTGGGAGTCGAGAGATAGG
AAGTATCCTTGACCGCCCTTCCCAGGACATGGTGGGGATGTTGGGGGGAT
GGAATGGAAAAGATGCAATTTCATAGGGAACTTTTGTCAGGGACACAGGA
GAGAGGGGGGCCGAGGGGAGAGAAGGGCGTCAACCCCAAGCGTCGGACAC
TCCCACGTCCATATCGCCGACGACGCTCCCGACCGCAGCCTCGACCGAAC
ATGGCGCTGGCAAAGCAGCCGATGGCAGCTCGTATGCACAGTCCGCCGCT
CGACTCGGTTGAAGATTCGCTCGTCATGTCCTTTGCGAGGGGGACCATGC
TTGATTCGGATAAACAATGGCACGGTGCCCTTCTGCTGAGCCGTTGCTTA
TCTGGATCAAGCATAGTTGCTGCTCGCAACCGGCCTGAAGAGCGAATCTT
CTTGGGAGTCGAGAGATAGGAAGTATCCTTGACCGCCCTTCCCAGGACAT
GGTGGGGATGTTGGGGGGATGGAATGGAAAAGATGCAATTTCATAGGGAA
CTTTTGTCAGGGACACAGGAGAGAGGGGGGCCGAGGGGAGAGAAGGGCGT
CAACCCCAAG back to top
|