rna7650, rna7650 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7650
Unique Name	rna7650
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1116
Alignment location	CM002472.1:474751..475602 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100620g1.3335.mrna
Orig protein id	gnl\|cribi\|Naga_100620g1.3335
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002472.1	supercontig	CM002472.1:474751..475602 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100620g1	gene7409	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23041.1	cds7630	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7650	rna7650-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002472.1:474751..475602-
coding sequence from alignment at CM002472.1:474751..475602-

mRNA sequence

>rna7650 ID=rna7650|Name=rna7650|organism=Nannochloropsis gaditana|type=mRNA|length=1116bp
CCCCCCCCCCCCTGCCTCCTTCCCCTCCCCCTCGCCATACCCGCCCTCCC
CCCTCCACGCGTCGTACTACCCGCACCCAGCCTACCTGCCTGTGCATCCC
TACCATCACCCCTACTACCATCATCCTTACATGCACACCGCTGCCGCGGC
CGCGGCCGCTGCCGCCTCCGGAGCCCCTCCCTCTAGCACCTATTATCCTC
TGCATCCCTCCCTCTACCCTCACTCGAGCCCGCCCGCCCCACTGCCCTCC
CTCCCGGCAGCCCCCGCCGCGTCCTCTTCCCCTTCCGCCTCCTCCCCCGC
CCCTTTGTCCTCTCAAGCGGCTTCGACCCAGACCGATGCGACCAGCGACA
CTGCGGGCACCCCCGCCGCCTCCACGCTGTCCCCCCCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCTGTCCTTCCTGAGTTGAAGGCTAGCGGCATGGCC
TCACCGGACGAGGCGCATGGCGTGCAGGGCGCGAGGGAGGGGGGGAGGGA
GGGCAAGGGGTACCACTCCCAGTACTATTACCAGCCACAGCCGCCACAGC
CTCCGCCCCCGAGCCAGAAGAAGAGGCGGCTCCCCGCGGAGATCATCACC
AAACCCACTTCCACCAGAGGTTTGGAGCTGCTTGCCATGACCCTCGCGGT
GTTGAAAGATGCCAAGCACCAAAGCCTCCCCCTTTGCTCCCTTGAGCGCG
AGGTCCAAGCTCGTATCTCTGCGGTGAGAGATGAGGGAGGGAAGGAGGCG
GGAAGCGAGGGAGGGGAAGGGGAGAAGGAGGGCGATAACAATACGCCCGG
GCAAAGCAACATGGCTGGAGCAGAGGTTTCGAAGAAGGAGGAGTTAGTGA
CTGCTGGCGAGATACGCGCCGTGGCCCGCATCCTGAAGGGTATCGGCCTC
GTCTCGTTCGCCTCGGTGAAGAACCCCCCCCCGCCCCGGCCCCCGCCCTC
CTCCTCCCTCTCCGCGTCTTCAACCTCCCTTCCACCCTCCTTGTCCGTCC
TTCTCTCCTCCTTGGTGCGTCTGGAGCGCCAGCGTCACCGAGATCATCCT
CTTCCCCTACCCAACACGCCCAAGGAGGAAACCGACGCGGCTCGGCCTCC
CTCCCTCCCTTCCTCC

protein sequence of rna7650

>rna7650-protein ID=rna7650-protein|Name=rna7650|organism=Nannochloropsis gaditana|type=polypeptide|length=122bp
MAPVIQDVTGQGGGYSSTANLSSERADNESGRSGVAVKAERADGGVGDGE
GKEGGRTPASSPLAGSPTPYLSVYTAPGTHGEAGKEALNAHAGWFGRGEE
KKEEGGTGSGTTGGAGQGSGGG

mRNA from alignment at CM002472.1:474751..475602-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7650 ID=rna7650|Name=rna7650|organism=Nannochloropsis gaditana|type=mRNA|length=852bp|location=Sequence derived from alignment at CM002472.1:474751..475602- (Nannochloropsis gaditana)
GGGGATACAAGCACTAGCATGTAACGAAAGTTTGCCGTGATTCCATGATT
TATACCCTGTTTGGGCGTTTCTATCGTCCTTTGCCGCTGGTAACGTGCAA
ATCATTTAATCACTCCTCGTCTTCTCTCTCAGCGTTTCCTCTTTCTCGCA
CCAGGGAACGAGATTAGAGCTGCTACTGATACCCGTTAGCCATGAGCTAT
TGGTGAAGCTCCAACCATATCCTGCTCCGCTTTCTCCTTGTGTCCTGGTT
GCCAAAAGGGACGAGTTAAGCGGGTAATTAGCCCAAGAGGTATGCGCTCA
CTTCCTAAATCTCCTTTCTCTGTGTGTGTCTTCTTGTAATGATAGGATGA
ACACCCACTAAAGTTCCCATCTTTCCCACTTGATAGCATATATGGTCCCG
CCCTGGCCTCCTGTGCGCTCTCTAGTCTCACCTTACCGTCTCTCACCTCT
CTTGCTCCTCCCCTCGTACCACGTCTCCAGACCGGCATGGCGCCAGTTAT
CCAGGACGTCACCGGGCAAGGTGGGGGCTACAGCAGCACTGCAAACTTGA
GCAGCGAGAGAGCCGACAATGAGAGCGGCCGCTCAGGGGTGGCTGTGAAG
GCGGAGAGGGCGGATGGAGGGGTCGGGGACGGGGAGGGCAAGGAGGGAGG
ACGCACTCCGGCGTCGTCGCCTCTGGCAGGCTCCCCGACGCCGTATTTGT
CCGTCTACACTGCCCCGGGCACACATGGAGAGGCTGGAAAAGAGGCGCTG
AACGCCCACGCGGGATGGTTTGGGCGTGGCGAGGAGAAAAAAGAAGAGGG
AGGTACCGGCTCTGGGACCACGGGGGGGGCCGGCCAGGGTTCTGGAGGAG
GT

Coding sequence (CDS) from alignment at CM002472.1:474751..475602-

>rna7650 ID=rna7650|Name=rna7650|organism=Nannochloropsis gaditana|type=CDS|length=366bp|location=Sequence derived from alignment at CM002472.1:474751..475602- (Nannochloropsis gaditana)
ATGGCGCCAGTTATCCAGGACGTCACCGGGCAAGGTGGGGGCTACAGCAG
CACTGCAAACTTGAGCAGCGAGAGAGCCGACAATGAGAGCGGCCGCTCAG
GGGTGGCTGTGAAGGCGGAGAGGGCGGATGGAGGGGTCGGGGACGGGGAG
GGCAAGGAGGGAGGACGCACTCCGGCGTCGTCGCCTCTGGCAGGCTCCCC
GACGCCGTATTTGTCCGTCTACACTGCCCCGGGCACACATGGAGAGGCTG
GAAAAGAGGCGCTGAACGCCCACGCGGGATGGTTTGGGCGTGGCGAGGAG
AAAAAAGAAGAGGGAGGTACCGGCTCTGGGACCACGGGGGGGGCCGGCCA
GGGTTCTGGAGGAGGT

Synonyms

Publications