rna7640, rna7640 (mRNA) Nannochloropsis gaditana

Overview
Namerna7640
Unique Namerna7640
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1258
Alignment locationCM002472.1:444540..445871 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100245g6.7082.mrna
Orig protein idgnl|cribi|Naga_100245g6.7082
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:444540..445871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100245g6gene7399Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7640rna7640-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23053.1cds7620Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7640 ID=rna7640|Name=rna7640|organism=Nannochloropsis gaditana|type=mRNA|length=1258bp
TTTTCCTCCTTCTTCCTTCCTCGCTGGCAGGAGCTCCGTGATCGCTACAC
TACCAAGACTCTCGACACCAAGACAAGCGAAGAATACCGCCCTCCTTCGC
GCCCGCCTTCCCCCTCCTCCCTCCCTTCCTCCTCCTCTGCCTCCTTCTCG
TCGTTGCCCGACGCCTCCACCTATACCTCCGACCCAAAGCCTTCCTCCTT
CCCTCCCTCCTTCCCTTCCCCGGAAATCCATGCCCCCCATGTGCCAAGAT
GGACCTTGGAGACTCGGACGGGAGGAGATCGGATCGAGCAGGGAGCGTCG
AGGGCGGACCTTTTCCATCACCGTCATCACCGGCACCCCGCGCTCGCCCA
GGAGCCAATGTCCTTCTCACCACCCGTTGCCCCCCACGCCCACGGACTGC
AATGGCAGCGCTACATGCATGAGGAGAGGGTGGCGGTGGGCAAGGGTGGA
GTCTATGGCGACAGTTTCGACGCGAGGATGGAGAGTTTCGAGGAGCGAAG
GAGGGGAAATGGAGGGCACGGAGGCGGGGAAGGAGGGAGAGAGGAAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGAGCTTGAGTACCTCGGTCATGCAC
GCCTCTCAGGCCTACCACCAAAGTATCATCGACCGACAAGATCAGCGACG
GCGGGAGGTGTTCGAGCCCCGGCAACCCCATTCGCTGTACAGATAACCGA
AGGGGCTGCGGAAAGCAAGATCAGGTGGGCTTCGCTGAGAATTCGGCAGC
GTCTGACGAGCCGCACGAGGTGGTGGAGGGATGAGTACCGGCGGGGATTG
AGGCGGTCAAAGACTAGGCAGGATGGGAGGGAGGGAGGGAGGGAGGGAGG
GAAGGAGGGAGGTACCTGGCGGTGGACAGCTTGGACGTGGGGGGGTTGAG
AGGGAGTGTCAGGGACTCTCTCCAGGAGGGTGGGATGAAGGAGCGGGGGA
AGAGAAGGCGTCAAGCACGTTGTTGACGCGTGTGTCATCAAGGCTTTTGT
GCATAGGAGGGCACGCGTAAGATGAAGCTACGGCAGGCAGAGGACCGGCC
CCAGGGAGAAGGAGGGGTGGAGGGAGTGGTAGCTGCTGCAAAGCCTTCCC
CGCCAGATGAAGGAGGCTGGGAAGAGATGGACAGGAGGGATGGGAGACGA
GGGAGCTGAGCCGTTGTGAGGTATCTAGAGCGTTCTGCGTTACGTCAGCG
CAGCCACGCGCCTATTGTCCCCTACCATGCGCGCTGCTTATGACCATCGT
CAACAATC
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protein sequence of rna7640

>rna7640-protein ID=rna7640-protein|Name=rna7640|organism=Nannochloropsis gaditana|type=polypeptide|length=233bp
MGDERQSSKTKKLHDVYRAVGRKRGEGVREAAERTREDELRRPSRLSRRA
LRPTGKGLVAGTCVEASPVFAGMNPSEAHTLALAREETASGMAWVKSRTL
AGGWDMGDGGVNVRQGVLFPQFFVHSGLSWSRVYAMGMGMMHQRCLVKPV
RQHRARTSPVDHTAEGDDERGRDPGAEGRVLRVALPLVCTTCLLGVNEGC
VRWWKVTKTHAKRETARQRRRTACRRMSECVRV
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mRNA from alignment at CM002472.1:444540..445871-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7640 ID=rna7640|Name=rna7640|organism=Nannochloropsis gaditana|type=mRNA|length=1332bp|location=Sequence derived from alignment at CM002472.1:444540..445871- (Nannochloropsis gaditana)
ATGGGTGATGAACGACAGAGCAGTAAAACAAAGAAGCTGCACGACGTGTA
TCGTGCTGTCGGCAGGAAACGTGGGGAGTATGTGCGTGTGCGAGGCGCAC
GGTCCAGGCATAATGCAAAGGAAGGGAGTGAAACCGCCGAAGAGACACGC
ACGCCCTTCGCTTTGTTTCCGGCTTGGGCTTTTGTTCCAAGTGACGGCCA
TGCCGGCGAGCACCAGGCTTGGTGGCGTGTGTAGTTGCTGTATGCGATGA
TGAGCATATGGGAGAGTCGATTGCGCGTGTAAAGAGGTGTGAGAGAAGCG
GCTGAACGCACGCGTGAGGATGAGTTGCGAAGGCCGTCCAGGCTGTCACG
TCGCGCTTTGAGGCCGACTGGCAAGGGTTTGGTAGCAGGGACTTGCGTAG
AGGCATCGCCCGTCTTCGCAGGCATGAATCCATCTGAAGCGCATACGCTT
GCACTGGCCAGGTGAGTAGGTGTGAGGGGAAGGGACGACGGGGGCTTTAC
ATGTGGTGTGGTGGTACGGGGAGGGACTTGAGGCGAGGGCGACGTGAAGC
CGAGACGTTGAAGCAATGAACTCATGTCCTTCACCATCCGCATGCATGGC
ATCCAGAGATGAGCAATCTGCCAGTATTTGCAGAGTGCTAGAGAGGAGAC
GGCAAGCGGTATGGCTTGGGTGAAGAGCAGGACGTTGGCTGGAGGATGGG
ACATGGGAGACGGAGGAGTCAACGTCCGGCAAGGCGTGTTGTTTCCCCAG
TTCTTCGTGCACAGCGGACTCTCCTGGAGCAGGGTGTACGCGATGGGCAT
GGGCATGATGCATCAAAGGTGTGGGGATGACGGTGAGGTCGGCAGAGGTG
AGTTGTTGACAGGGCCTCGAATGGGTAGTGCGAGGCGGGGTTGGTGTAGC
TGTAGGAGAGCCCGCCAGGCGGCACAGGCGGAGGCGGCGTACCTGATGCA
TCAGGGAGAATGCTTGCGTAAGGTGTTGTTGCCGGGCGCAGGATGGTGTC
GCGTGTGCGTGTCCCCTGACAGGGTGTGTCTCCGTTTCCTCAGCCACCCC
GTCCACCACAGATGTCTCGTGAAGCCTGTGAGGCAGCACCGGGCGCGTAC
CTCCCCGGTCGATCACACGGCAGAGGGAGACGACGAGCGAGGGCGAGATC
CTGGGGCTGAAGGACGTGTTCTGCGTGTGGCTTTGCCTTTGGTGTGCACG
ACATGCCTGCTTGGCGTTAACGAAGGATGTGTACGGTGGTGGAAGGTTAC
CAAAACGCACGCGAAGAGGGAAACAGCGAGGCAAAGAAGACGGACAGCGT
GCAGAAGGATGAGCGAGTGTGTGAGAGTTTAA
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Coding sequence (CDS) from alignment at CM002472.1:444540..445871-

>rna7640 ID=rna7640|Name=rna7640|organism=Nannochloropsis gaditana|type=CDS|length=2808bp|location=Sequence derived from alignment at CM002472.1:444540..445871- (Nannochloropsis gaditana)
ATGTCTCGTGAAGCCTGTGAGGCAGCACCGGGCGCGTACCTCCCCGGTCG
ATCACACGGCAGAGGGAGACGACGAGCGAGGGCGAGATCCTGGGGCTGAA
GGACGTGTTCTGCGTGTGGCTTTGCCTTTGGTGTGCACGACATGCCTGCT
TGGCGTTAACGAAGGATGTGTACGGTGGTGGAAGGTTACCAAAACGCACG
CGAAGAGGGAAACAGCGAGGCAAAGAAGACGGACAGCGTGCAGAAGGATG
AGCGAGTGTGTGAGAGTTTAAAGAGGAGACGGCAAGCGGTATGGCTTGGG
TGAAGAGCAGGACGTTGGCTGGAGGATGGGACATGGGAGACGGAGGAGTC
AACGTCCGGCAAGGCGTGTTGTTTCCCCAGTTCTTCGTGCACAGCGGACT
CTCCTGGAGCAGGGTGTACGCGATGGGCATGGGCATGATGCATCAAAGAG
GTGTGAGAGAAGCGGCTGAACGCACGCGTGAGGATGAGTTGCGAAGGCCG
TCCAGGCTGTCACGTCGCGCTTTGAGGCCGACTGGCAAGGGTTTGGTAGC
AGGGACTTGCGTAGAGGCATCGCCCGTCTTCGCAGGCATGAATCCATCTG
AAGCGCATACGCTTGCACTGGCCAGATGGGTGATGAACGACAGAGCAGTA
AAACAAAGAAGCTGCACGACGTGTATCGTGCTGTCGGCAGGAAACGTGGG
GAATGTCTCGTGAAGCCTGTGAGGCAGCACCGGGCGCGTACCTCCCCGGT
CGATCACACGGCAGAGGGAGACGACGAGCGAGGGCGAGATCCTGGGGCTG
AAGGACGTGTTCTGCGTGTGGCTTTGCCTTTGGTGTGCACGACATGCCTG
CTTGGCGTTAACGAAGGATGTGTACGGTGGTGGAAGGTTACCAAAACGCA
CGCGAAGAGGGAAACAGCGAGGCAAAGAAGACGGACAGCGTGCAGAAGGA
TGAGCGAGTGTGTGAGAGTTTAAAGAGGAGACGGCAAGCGGTATGGCTTG
GGTGAAGAGCAGGACGTTGGCTGGAGGATGGGACATGGGAGACGGAGGAG
TCAACGTCCGGCAAGGCGTGTTGTTTCCCCAGTTCTTCGTGCACAGCGGA
CTCTCCTGGAGCAGGGTGTACGCGATGGGCATGGGCATGATGCATCAAAG
AGGTGTGAGAGAAGCGGCTGAACGCACGCGTGAGGATGAGTTGCGAAGGC
CGTCCAGGCTGTCACGTCGCGCTTTGAGGCCGACTGGCAAGGGTTTGGTA
GCAGGGACTTGCGTAGAGGCATCGCCCGTCTTCGCAGGCATGAATCCATC
TGAAGCGCATACGCTTGCACTGGCCAGATGGGTGATGAACGACAGAGCAG
TAAAACAAAGAAGCTGCACGACGTGTATCGTGCTGTCGGCAGGAAACGTG
GGGAATGTCTCGTGAAGCCTGTGAGGCAGCACCGGGCGCGTACCTCCCCG
GTCGATCACACGGCAGAGGGAGACGACGAGCGAGGGCGAGATCCTGGGGC
TGAAGGACGTGTTCTGCGTGTGGCTTTGCCTTTGGTGTGCACGACATGCC
TGCTTGGCGTTAACGAAGGATGTGTACGGTGGTGGAAGGTTACCAAAACG
CACGCGAAGAGGGAAACAGCGAGGCAAAGAAGACGGACAGCGTGCAGAAG
GATGAGCGAGTGTGTGAGAGTTTAAAGAGGAGACGGCAAGCGGTATGGCT
TGGGTGAAGAGCAGGACGTTGGCTGGAGGATGGGACATGGGAGACGGAGG
AGTCAACGTCCGGCAAGGCGTGTTGTTTCCCCAGTTCTTCGTGCACAGCG
GACTCTCCTGGAGCAGGGTGTACGCGATGGGCATGGGCATGATGCATCAA
AGAGGTGTGAGAGAAGCGGCTGAACGCACGCGTGAGGATGAGTTGCGAAG
GCCGTCCAGGCTGTCACGTCGCGCTTTGAGGCCGACTGGCAAGGGTTTGG
TAGCAGGGACTTGCGTAGAGGCATCGCCCGTCTTCGCAGGCATGAATCCA
TCTGAAGCGCATACGCTTGCACTGGCCAGATGGGTGATGAACGACAGAGC
AGTAAAACAAAGAAGCTGCACGACGTGTATCGTGCTGTCGGCAGGAAACG
TGGGGAATGTCTCGTGAAGCCTGTGAGGCAGCACCGGGCGCGTACCTCCC
CGGTCGATCACACGGCAGAGGGAGACGACGAGCGAGGGCGAGATCCTGGG
GCTGAAGGACGTGTTCTGCGTGTGGCTTTGCCTTTGGTGTGCACGACATG
CCTGCTTGGCGTTAACGAAGGATGTGTACGGTGGTGGAAGGTTACCAAAA
CGCACGCGAAGAGGGAAACAGCGAGGCAAAGAAGACGGACAGCGTGCAGA
AGGATGAGCGAGTGTGTGAGAGTTTAAAGAGGAGACGGCAAGCGGTATGG
CTTGGGTGAAGAGCAGGACGTTGGCTGGAGGATGGGACATGGGAGACGGA
GGAGTCAACGTCCGGCAAGGCGTGTTGTTTCCCCAGTTCTTCGTGCACAG
CGGACTCTCCTGGAGCAGGGTGTACGCGATGGGCATGGGCATGATGCATC
AAAGAGGTGTGAGAGAAGCGGCTGAACGCACGCGTGAGGATGAGTTGCGA
AGGCCGTCCAGGCTGTCACGTCGCGCTTTGAGGCCGACTGGCAAGGGTTT
GGTAGCAGGGACTTGCGTAGAGGCATCGCCCGTCTTCGCAGGCATGAATC
CATCTGAAGCGCATACGCTTGCACTGGCCAGATGGGTGATGAACGACAGA
GCAGTAAAACAAAGAAGCTGCACGACGTGTATCGTGCTGTCGGCAGGAAA
CGTGGGGA
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Synonyms
Publications