rna7631, rna7631 (mRNA) Nannochloropsis gaditana

Overview
Namerna7631
Unique Namerna7631
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length941
Alignment locationCM002472.1:429131..429765 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102885g1.2379.mrna
Orig protein idgnl|cribi|Naga_102885g1.2379
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:429131..429765 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102885g1gene7390Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7631rna7631-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23062.1cds7611Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7631 ID=rna7631|Name=rna7631|organism=Nannochloropsis gaditana|type=mRNA|length=941bp
CTCCCTCCCTCTTCTTCTCTTCCGGGGCCTTGTGCCCGTGTTGACGACGA
GCACTTGACCCGCTTCTCGCTTTCCTCGATCCCTCCCTCCTACTTCCCCT
CTTTTTCCCTCCCCCCTTCTCCTCCCTCCTTCCCTTCCAATTACGTCCTC
TTCCCCTCCTTCATCCAGCTGGCCGTCGCCCCCTACATCATGAGGGAGGT
GAAGCCTTTAATGCAAGGAGCAGACCTGATCTCCACGGACGAGGAGGAGG
ACTGAGAGACGCCGAGAGGGAGGGAGGGAGGGAGGGAGGGAAGGCGAGTA
GGAAGGGACGAACGAGAAGGGAGACCATGAGGGGGAACAGATCGATCTCG
TGAGGTGAGGAGGGCGCTGTTTTAATCTCTTCAATGTATGACACAAGGGG
GAAGATTCGGGTGATTGCGGGTTACAGAAGGACCGGATAAGGAAGGTTGA
ATTGAAATTCCTGTGTAAAATGGTAGACATAAGGTCAAGTGCGAAAAGGA
ATCGATGTTGCTCGAGGCAGTGGGGGAAGATCGATGGGCGCGAGGAAAGA
GGATGATAAGGGAGGAGAAGGGTGAGGGAGGAGGAAGGAAGGAAGACGTT
GGGTGTTTGCGTGCGAGAGGAAGCGCGTAAGGCCTGAGGACACGCTCAAA
GAATTGTGGATGAAAAAGAGAATTGGATTTGACGACACGCTCCTTGTTCT
TGTGGTGGGACCGCATGAGGCTGGGGAAAGTGTCACACGCGCATGCGAGA
GAGGGATAAGAAGCAAAACGGCGCAAAAAATAAGAAATGGAGTGCGAAAG
AACTTCTCGATGCATATAGGAATCCTTCACCGTCCCCGACTCTGGTGTCG
AGAAGCAACCTTAAATGAGATTATTAAGCAAACATTTTGTGGAGTCCGGG
ACATGACTTGCTTTTTGGTTGTTTGTTCCTTCATCTTGTAG
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protein sequence of rna7631

>rna7631-protein ID=rna7631-protein|Name=rna7631|organism=Nannochloropsis gaditana|type=polypeptide|length=98bp
MRRTGWPPLPPPRTLREPSWMTRPTTIPPTRPSTSIPTQPLPTIPSPPRQ
ENGGEPEEGREGGGEARRAFGPSTEWQLPLCSTVHPCRGRRGPKPGNI
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mRNA from alignment at CM002472.1:429131..429765+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7631 ID=rna7631|Name=rna7631|organism=Nannochloropsis gaditana|type=mRNA|length=635bp|location=Sequence derived from alignment at CM002472.1:429131..429765+ (Nannochloropsis gaditana)
ACGGACTACCTCCCAGCGCATGCGCCGGACGGGAtggccgcccctccctc
ctccccgtaccCTCCGCGAGCCTTCTTGGATGACGCGCCCCACGAcgatc
cctcccacccgacCCAGCACCAGCATCCCTACCCaacccctccccaccat
tcCCAGCCCGCCACGGCAGGAGAATGGAggggagccggaggaagggaggg
agggcgggggggaggctcgTCGGGCTTTCGGCCCGTCTACCGAGTGGCAG
CTCCCCCTCTGCTCGACGGTCCATCCCTGCCGGGGCCGTCGCGGCCCCAA
ACCCGGGAACATTTGAACCCAAATTCAAATTTAAATTCAAATATGGATTT
CCGACCTCGGGCCAACTCCCActcgtccgtctcctccattggcagcacct
cctccgaaccttcctttcccgtcaCGCCCTACCTGGCACCCTTCCCGGCT
CATCACCCGTCGAACGCCCCGAGTGCCTCGTGGCGTCAGGAGGCACAGGG
GCTGGTCCCAatggaacgggagggaaagctgtCGCAGCCGTTACGGGCGC
GGGAAAGCGACGGAAGGATGGAGCAGGCACTGGAAGCGGCTCCGCCTCCG
catgcccttccttccaatGGGGTCACCCACCCGCC
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Coding sequence (CDS) from alignment at CM002472.1:429131..429765+

>rna7631 ID=rna7631|Name=rna7631|organism=Nannochloropsis gaditana|type=CDS|length=297bp|location=Sequence derived from alignment at CM002472.1:429131..429765+ (Nannochloropsis gaditana)
ATGCGCCGGACGGGAtggccgcccctccctcctccccgtaccCTCCGCGA
GCCTTCTTGGATGACGCGCCCCACGAcgatccctcccacccgacCCAGCA
CCAGCATCCCTACCCaacccctccccaccattcCCAGCCCGCCACGGCAG
GAGAATGGAggggagccggaggaagggagggagggcgggggggaggctcg
TCGGGCTTTCGGCCCGTCTACCGAGTGGCAGCTCCCCCTCTGCTCGACGG
TCCATCCCTGCCGGGGCCGTCGCGGCCCCAAACCCGGGAACATTTGA
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Synonyms
Publications