rna7629, rna7629 (mRNA) Nannochloropsis gaditana

Overview
Namerna7629
Unique Namerna7629
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length964
Alignment locationCM002472.1:421284..422301 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101387g2.10713.mrna
Orig protein idgnl|cribi|Naga_101387g2.10713
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:421284..422301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101387g2gene7388Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7629rna7629-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23064.1cds7609Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7629 ID=rna7629|Name=rna7629|organism=Nannochloropsis gaditana|type=mRNA|length=964bp
GACGAGCTTCTGAAGTACGACCCGGCAGCTGAATGCGCAGAGTATGTAGG
GAGGGAGGGGGATAAGGCAACCGATGGAAAGGAAAGGGAACAGCAAAGGA
GACCGAAAGGGGGGGGAGGAAGCGAAGGAGGGAGGGAGGGAGGAACGATC
GCCGGTGCTTGATGATAGCCAGGAGAGGATTCTATGTCTCTTTCCTCCTT
AGAGCCCCCTCCTTCCCTATGCCTTTTCCCCTTCGTTCTCAACTTTCCCC
CTGTCAGGGATTACGAGCTATGGCTTCGACTTTCCTATCCCCCCGCCCTC
TCTCCCGCCCTCCCTCCCGCCCTGCTCTCCGTCCTCCCCACGCCCGTCAT
CTACCTCCGACGGCACGAGGAGAGTCAATCCCAGAGACAGAGGAGCACGC
AGAAAGTGGCAGCGAATGCGGCGGTGCGGCGGGCGATGGGTAACCTGCTC
GGGCGGGAAGTGGCAGTATCGGCGGTCACGGCGCTTCGTGACCCGGAGGG
TGTCGCGACATCCTTAACCCTCCTCACAGAGGCGTGTGATTTGCTGCTCA
CGCTCTATAAGGCGTTTCTAGGCTCTCTTGAGATGCAAGCGTTGAACTCC
GTGTCCGTGGTTGCGGAAGATAGACGAAAGGGGCGGAGGGTGGTGGACAT
GATGGGATGGGAAGGACGCCAAAAGGAAGAGCGGAGGGTGGGATGTTTAC
AGGTGAAGAGCGACGTATGTGCACGACTGCAGGAATTGGCTGTTTTGAGC
ATTGGACGGAACGGTCCGAAAGGCTTACCTTTGTTGATGAAGGCGCGGGA
AGCTATGCAAAGCTTAAACAAATAATGTCCTCGGAGGAATGTAATTCTTT
TTGGAATAATAATGCAAGAAGAACGTGTTGGAATTTTGCGAACAAGTTTG
CCCGAATGCAGAAGAAAGCGTCTGTAATGATCCCAAGGTCGTTTTTTATA
AGCAATTTTTCGGT
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protein sequence of rna7629

>rna7629-protein ID=rna7629-protein|Name=rna7629|organism=Nannochloropsis gaditana|type=polypeptide|length=202bp
MPASTSPPPFPTDVTNLSPRKFSLSMLFKTRRRWSATADSVEVWEDARAS
LGGTDEGQLREESREEERRQGREMIKASSSDLDPCVAPFPPCSSLVPRQA
SPGRGLATEEEEEEGEEEGEEEGEEEGKERKAFNRGKKRRRKRAPSMGRD
EEEEGTKIDGMGGELCPSERILLAPEAPFPPSSSGLGPGTEEEGKGGRGR
WR
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mRNA from alignment at CM002472.1:421284..422301+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7629 ID=rna7629|Name=rna7629|organism=Nannochloropsis gaditana|type=mRNA|length=1018bp|location=Sequence derived from alignment at CM002472.1:421284..422301+ (Nannochloropsis gaditana)
TTTCTATTTTTTGCAACCTCTCCGGCCATTccagaagggaaagggacaaA
AACCTGAAGATCTGACGACGATCGCGTGCGAAGTCTCGTACAAGAGTGCC
AGGCGTTGGAATTTGCGGCAGTCCTTGTGTGGTTTTTTCCTCAAAAGAGA
CTTGGCCATTTTCAAAGGAACCGTTAGGATCAAAAGCAACCTCGTACGGC
AATGCCACGGTCGATAAATTCACCTGAACTTCGGGATGAAGGCCCCAAGG
CGCCTTTAAACGTGTTGACACGCGACTCATGCAGACTTTTACAGACATTT
TGCAGGTGTGGGCTTGAAACGAGGGCGTAAGGATTGAACTTACGGTGCAC
GTCCCAGCGGCCCAAGCAAACGTCATACGGTGTCGCCCAGAGACCTCTCT
CTACCTTCGATGCCCGCGtccacttcccctcccccgttcccaACCGATGT
CACgaacctttccccccgaaaATTTTCTCTTTCGATGCTGTTCAAGACCA
GGCGTCGCTGGAGTGCCACAGCCGACTCTGTGGAGGTGTGGGAAGATGCT
CGTGCTTCGTTGGGGGGTACCGATGAAGGGCAACTACGCGAGGaaagcag
agaggaggagcgcagGCAAGGACGAGAGATGATTAAGGCTTCGTCCTCTG
ATCTCGATCCCTGCGttgctcctttccctccttgctcctcgcTTGTCCCC
AGGCAGGCAtcgccggggagggggctggcgacggaggaggaggaggagga
gggggaggaggagggggaggaggagggggaggaggaagggaaggaaagaa
aggcatTCAatagggggaaaaaaagaagacgaAAGAGGGCACCAAGCAtg
ggaagggatgaagaggaggaggggaccaaAATTgatgggatgggagggga
acTTTGCCCTTCAGAGAggatcctcctcgctcccgaagcacccttccctc
cttcctcttccggctTGGGCCCAGGAactgaggaagaagggaaggggggg
agggggcgatggagatgA
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Coding sequence (CDS) from alignment at CM002472.1:421284..422301+

>rna7629 ID=rna7629|Name=rna7629|organism=Nannochloropsis gaditana|type=CDS|length=609bp|location=Sequence derived from alignment at CM002472.1:421284..422301+ (Nannochloropsis gaditana)
ATGCCCGCGtccacttcccctcccccgttcccaACCGATGTCACgaacct
ttccccccgaaaATTTTCTCTTTCGATGCTGTTCAAGACCAGGCGTCGCT
GGAGTGCCACAGCCGACTCTGTGGAGGTGTGGGAAGATGCTCGTGCTTCG
TTGGGGGGTACCGATGAAGGGCAACTACGCGAGGaaagcagagaggagga
gcgcagGCAAGGACGAGAGATGATTAAGGCTTCGTCCTCTGATCTCGATC
CCTGCGttgctcctttccctccttgctcctcgcTTGTCCCCAGGCAGGCA
tcgccggggagggggctggcgacggaggaggaggaggaggagggggagga
ggagggggaggaggagggggaggaggaagggaaggaaagaaaggcatTCA
atagggggaaaaaaagaagacgaAAGAGGGCACCAAGCAtgggaagggat
gaagaggaggaggggaccaaAATTgatgggatgggaggggaacTTTGCCC
TTCAGAGAggatcctcctcgctcccgaagcacccttccctccttcctctt
ccggctTGGGCCCAGGAactgaggaagaagggaagggggggagggggcga
tggagatgA
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Synonyms
Publications