rna7627, rna7627 (mRNA) Nannochloropsis gaditana

Overview
Namerna7627
Unique Namerna7627
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1166
Alignment locationCM002472.1:416860..418110 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101466g1.1540.mrna
Orig protein idgnl|cribi|Naga_101466g1.1540
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:416860..418110 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101466g1gene7386Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7627rna7627-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23066.1cds7607Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7627 ID=rna7627|Name=rna7627|organism=Nannochloropsis gaditana|type=mRNA|length=1166bp
GACGTATGTGTTGAGAGTGTCTGAGTGGTATTTCCATTTTTTAGTTTTAT
GTCTCAGAGCTTCGTCTCACAAGACATTACTTCTTGATTAAGGCGGACAT
GCATCGAAGCAGACTCAGTTTTATCCAAGCGAGGAGAAGTGGACGACGGG
GCAATGCTTGAAGTTTGCCAAGAGCATCGCATCATGTGTGATAGGACCTA
GTAGGACCAGTTACCCTATGATAAAGGCTTGCGTCCAAAGGCCTCTTTTG
ATTTCCATTCTACCGACGACCACGGTGTACAAAACTAACCACAAAACAAA
GTTATCCTAGCAACGAAAAAGCCTCCAATGCCCGTCCTCTTTTTCGCTAC
GAGCGTCAAGTACCTGTCTCCTCACAGTGTTGTCACCCCACGCATTCTAT
ACAGTTGACATTTCTATCCTCGTGAAAAGGCCAGAAGATGCTGTTTTCCA
CGTCCATTCACCGAATACCCTTGCGATTGTCGGCAAACATGCAAAAGGCT
CACATTACTTCACAAGGAAGACGAGCAACGGGAGCATTTCAATCCCTTTC
ATTGGTGCGGCGCGCGGTTATCACCAGACCACACCGAATCCATTCCCACC
ACCTTCTTGCCATCGTGCACAGCACGAAGAAAAGAAACAGAAATGGATCT
CCCTTCTCCATCCACCTCGGCCACGCCTCGTTCTGCTCCCAAAAAACCTC
GGACGACAACAGGGGCCCTGGGGCCCGGGCAGAGACCACTAGCACGTCGC
CCTCCCCTCCCTCGACATCCGCCACTCCCACGGACGTCCCCGGGGTCCAT
CATGCCACAAAACGCCTCGCAATTGTCTACACGTGCAAGGTGTGTCAGAC
CCGATCGGTCAAAGGCTTTTCCCAAGAAGCCTACGACCACGGCGTCGTCC
TTGTCAGGTGCCCGGGCTGCGACAATCTGCACCTTATAGTCGACAGACTC
GGATGGTTTGAGGACGGGGGCACGGACATTCAAAAGATTTTGGCGGAGAA
GGTTGGGGAGGGGCCAAGGGCGGGAGGGAGGGAGGGAGGGAGGGAGCAAG
GGAGGGAGGGAGGAACCAATGTAAAGGAGGGGCGGAACACGGACTCGGGC
CAAAACAAGAGAGTCGCTCAATGACATATTCGCCTCCTCTCCTTCCCAAC
TCCCCTCCCTCCTCCC
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protein sequence of rna7627

>rna7627-protein ID=rna7627-protein|Name=rna7627|organism=Nannochloropsis gaditana|type=polypeptide|length=200bp
MCLNFFFPVSFALTILCFVSTGCMPPSLHLLAFSKDRSFQCRTLLHSLDT
YLSPPPASLTVLYTVSSPTFLKGYQDLERMRQRGDHPGGKAAHKEDEGVP
GPTKSSLDDGSEQSSTCIPTTFLHEDEAGGFSTALAMVLGQWRESHRKGR
KDKQRRGREGGAGEEEREEEACVMWLVDDLLFHAPLDATPFLALLTRGRE
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mRNA from alignment at CM002472.1:416860..418110+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7627 ID=rna7627|Name=rna7627|organism=Nannochloropsis gaditana|type=mRNA|length=1251bp|location=Sequence derived from alignment at CM002472.1:416860..418110+ (Nannochloropsis gaditana)
CGTTGCTAGGATAACTTTGTTTTGTGGTTAGTTTTGTACACCGTGGTCGT
CGGTAGAATGGAAATCAAAAGAGGCCTTTGGACGCAAGCCTTTATCATAG
GGTAACTGGTCCTACTAGGTCCTATCACACATGATGCGATGCTCTTGGCA
AACTTCAAGCATTGCCCCGTCGTCCACTTCTCCTCGCTTGGATAAAACTG
AGTCTGCTTCGATGCATGTCCGCCTTAATCAAGAAGTAATGTCTTGTGAG
ACGAAGCTCTGAGACATAAAACTAAAAAATGGAAATACCACTCAGACACT
CTCAACACATACGTCACCGTTTCTTACGGCCCACCAGTGACCTCCTGCTT
TTTGATATACTGGAAAATTCTGAACACATTTCAATAATTGTATGCGAATA
ATTGCGTTGCCTAGTCATAAATTGGTACAACAAGTCGACTGTGTCTGGAT
CAAAAGGAGCAATGCTGCAATTTAGGATTCAATGTTCCTCCCGGTACAGT
CCCCTCTTTTTGAAGCTCATCGCAATACGAGTCAACCCATTCTCTAAGGT
TTAGAGGAGTTTGAAGCTCATCGCAATACGAGTCAACCCATTCTCTAAGG
TTAGAGGAGTAAGTCGAAGATACGGGACGCAGATTATAAGTTCATCTCAC
ATGTGCCTCAACTTCTTTTTTCCGGTCTCCTTTGCGCTTACCATTCTCTG
CTTTGTGTCAACAGGctgcatgcctccctccctccacctccttgcctttt
ccaAAGACCGCTCTTTCCAATGCCGCACCCTCCTGCATTCCCTGGACACC
TATTTGTCACCACCGCCCGCTAGTCTCACGGTTCTATATACCGTGTCCTC
CCCTACGTTCCTGAAAGGCTATCAAGACCTTGAGAGGATGCGGCAGCGCG
GCGACCACCCAGGCGGAAAAGCTGCccacaaggaggacgaaggcgttCCT
GGCCCGACGAAGTCATCCCTCGACGACGGCTCTGAACAATCGAGTACATG
CATTCCCACCACATTCCTACACGAGGACGAAGCTGGAGGCTTCTCCACGG
CCCTGGCGATGGTGCTGGGAcaatggagggaaagccaccggaagggaagg
aaggacaagcagcgacgcgggagggagggaggggcaggagaggaagaaag
ggaggaagaagcctgTGTCATGTGGCTGGTCgacgacctcctcttccatg
cccCGCTCGACGCGACTCcattcctcgccctcctcacgcggggacgggag
g
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Coding sequence (CDS) from alignment at CM002472.1:416860..418110+

>rna7627 ID=rna7627|Name=rna7627|organism=Nannochloropsis gaditana|type=CDS|length=601bp|location=Sequence derived from alignment at CM002472.1:416860..418110+ (Nannochloropsis gaditana)
ATGTGCCTCAACTTCTTTTTTCCGGTCTCCTTTGCGCTTACCATTCTCTG
CTTTGTGTCAACAGGctgcatgcctccctccctccacctccttgcctttt
ccaAAGACCGCTCTTTCCAATGCCGCACCCTCCTGCATTCCCTGGACACC
TATTTGTCACCACCGCCCGCTAGTCTCACGGTTCTATATACCGTGTCCTC
CCCTACGTTCCTGAAAGGCTATCAAGACCTTGAGAGGATGCGGCAGCGCG
GCGACCACCCAGGCGGAAAAGCTGCccacaaggaggacgaaggcgttCCT
GGCCCGACGAAGTCATCCCTCGACGACGGCTCTGAACAATCGAGTACATG
CATTCCCACCACATTCCTACACGAGGACGAAGCTGGAGGCTTCTCCACGG
CCCTGGCGATGGTGCTGGGAcaatggagggaaagccaccggaagggaagg
aaggacaagcagcgacgcgggagggagggaggggcaggagaggaagaaag
ggaggaagaagcctgTGTCATGTGGCTGGTCgacgacctcctcttccatg
cccCGCTCGACGCGACTCcattcctcgccctcctcacgcggggacgggag
g
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Synonyms
Publications