rna7624, rna7624 (mRNA) Nannochloropsis gaditana

Overview
Namerna7624
Unique Namerna7624
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length966
Alignment locationCM002472.1:410375..410830 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100772g4.9917.mrna
Orig protein idgnl|cribi|Naga_100772g4.9917
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:410375..410830 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100772g4gene7383Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7624rna7624-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23069.1cds7604Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7624 ID=rna7624|Name=rna7624|organism=Nannochloropsis gaditana|type=mRNA|length=966bp
ATGGACGACTGCTGCCACGGCGGCAGCGGATTCACCTTTAACCACCATCA
GTCCTGCGCTCCTCAGAGCAGGCAACGTCATGCCAGCACCTCGGTGGCCA
AGCTCCCTCCCCATCGCCTAAGGCGGCCCTCCTCTTCCCCCCCCTCCTCC
TCCTCCCCCTCCCCCTCGCCCTCCGCCCCGCCTTCCACCCTGCCTAAGTC
CTTCCTGCGTCGGGCCACCTCCCAGCCCCCACCTCCCTCCCGCCTCCTCC
CTCCTGCTGCCCTCATCCCCCCACAAACCCCACCCCTCAACCCCTTGTCC
CGCCACTCTAGTCCCCTCCCTCCCTCCTTCCTTCCCTCCCTCTCTCCAGC
CCGCCCGCCCTCCCACCCGCCCTTCTCCCGCCGCTCCCATTCTTTGGAGG
CGGAGGTGGGCTTGAGCGATGGCGTGGATTTGTGCGGGGACGCCCACGAC
CCGCCTCTTTCCCACCCTACCCTCCCTCCCTCCCTTTCTTCCTCTGCGTC
TACTGCCTCTTCCTCCTCCTTCTCAGCGGCGCTTTTTTCCTCCTCCTCCT
CCGCTTCCTCCGCCGCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTGGTCC
TCCCCGGCCCGACGCTTGGCGAAGACGGGAGGGAGGGAGGGAGGGGGGGA
GAGAGGGAGGGAGGGCGGGATGGAGGGCGGGCCCAAGACGATGGCGACCG
GGAGCCCTCTTTCCTTGCATGTTCTGCTGGAGTGGGGAGGGGAAGGGCGG
CCATTGGTGTCAGAGGAGGCGGAGAAAAGGGGAGGAAGCATGAGTTACGG
CATGACCCTCCTTGTCTCCCCGCCGAGGAAGGGACGAACACCCTCCCTCT
TGGGGCCCGAGGCCTACGGATCGTCCGAGGAGATGGTGCACGGTACCGCC
GAGGGGGGCGCCGCCGAGACGGGAACGGCGGGTGGGGTGGAAGAGAGGGA
GGAGGGGAGGAAGTGA
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protein sequence of rna7624

>rna7624-protein ID=rna7624-protein|Name=rna7624|organism=Nannochloropsis gaditana|type=polypeptide|length=151bp
MRRGDECGVRRSVCTGRGGREDDTEERMRAHILWLGGMGGCNGTQVGTRQ
RLGDGERRKTGVGGACEEEEGGRGEGGGRRGRLRKQGAYRGGKRPTGEGR
GRMGMEEGRDTIPLLACLWTESDRDPRGRKCGQGEVPAVEINHEETWGEM
G
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mRNA from alignment at CM002472.1:410375..410830+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7624 ID=rna7624|Name=rna7624|organism=Nannochloropsis gaditana|type=mRNA|length=456bp|location=Sequence derived from alignment at CM002472.1:410375..410830+ (Nannochloropsis gaditana)
ATGAGGCGTGGTGATGAATGTGGAGTGAGGCGAAGTGTCTGTACAGGtcg
tggtgggagggaagatgatACGGAGGAACGAATGCGAGCACACATCCTGT
GGcttggagggatggggggatgTAACGGGACTCAAGTGGGCACGAGGCAA
CGACTCGGTgatggggaaagaaggaagacgggggtaggaggtgcttgcga
ggaggaggagggaggaagaggagagggaggagggaggcgcgggcgtcTAA
GGAAGCAAGGGGCCtacaggggagggaagaggcctacaggggagggaaga
gggaggatggggatggaagaggggagagataccattcctctcctcgcgTG
CCTGTGGACCGAGAGCGACCGGGAtccgcgaggaaggaagtgcgGACAAG
GGGAGGTGCCGGCGGTGGAAATCAATCATGAGGAGACATGGGGAGAAATG
GGCTGA
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Coding sequence (CDS) from alignment at CM002472.1:410375..410830+

>rna7624 ID=rna7624|Name=rna7624|organism=Nannochloropsis gaditana|type=CDS|length=456bp|location=Sequence derived from alignment at CM002472.1:410375..410830+ (Nannochloropsis gaditana)
ATGAGGCGTGGTGATGAATGTGGAGTGAGGCGAAGTGTCTGTACAGGtcg
tggtgggagggaagatgatACGGAGGAACGAATGCGAGCACACATCCTGT
GGcttggagggatggggggatgTAACGGGACTCAAGTGGGCACGAGGCAA
CGACTCGGTgatggggaaagaaggaagacgggggtaggaggtgcttgcga
ggaggaggagggaggaagaggagagggaggagggaggcgcgggcgtcTAA
GGAAGCAAGGGGCCtacaggggagggaagaggcctacaggggagggaaga
gggaggatggggatggaagaggggagagataccattcctctcctcgcgTG
CCTGTGGACCGAGAGCGACCGGGAtccgcgaggaaggaagtgcgGACAAG
GGGAGGTGCCGGCGGTGGAAATCAATCATGAGGAGACATGGGGAGAAATG
GGCTGA
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Synonyms
Publications