rna7618, rna7618 (mRNA) Nannochloropsis gaditana

Overview
Namerna7618
Unique Namerna7618
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1008
Alignment locationCM002472.1:390110..391519 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101757g1.7136.mrna
Orig protein idgnl|cribi|Naga_101757g1.7136
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:390110..391519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101757g1gene7376Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7618rna7618-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23075.1cds7598Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7618 ID=rna7618|Name=rna7618|organism=Nannochloropsis gaditana|type=mRNA|length=1008bp
TCGAGGGACTTGGAGTCGTGTCTTCCTTCCCCTCTTTTATCCCCCTGACA
AAGTTACTTCGTCCTCATTTATCTCTATCTGCATACAACATCTCTAGGCT
TGTAAATAAAGGGTCGAAGACACCTGGGCGGATCGCCCCGCACCCGGGCT
ATTGAAATGGAGGGTGGATGGATCGAGCGTCGCGGTCGGCAGGAACAGAG
CATGAAGGAGGAGGTGCTAAGGGAGGAAAAAGGAGAAACAGAGATCAAAA
AGGAAGAGGAAGAATGGAAAGATGGGAGGGAGGAAGAGGAGGCGGAAAGC
CAAGAGGAGATAAGGGGGGCTGTGTCGAGTCTCGTGGAGGGACTGGCGTT
CGAGGAAAAAGGGGAGAGCCCCGAGAGGGAGGAAGGGAGAAGAGAGAGGA
CTAGAAGCCAAAGCGGGCTGAAGAGTAGGACGGTCGATGGAAGCTCACCA
TTGGCTCTTCACCTGGCGTCGACAATGGGCTCGTCAAAAGCAACGGGTGC
AGCACCCGGGGAGGACTCGAGCCATTTCCTTGAGGAGGGAGGACGAGAGG
GTCCGACGCTGCCCGTTTCCGCTTCCTCCGCCTCGACCTCCCTCTCTTCC
TCCTCCTCTCCCGCGTCCTCGCTCGTCTTGGTGGAGGGCGAGGGAACCGG
CGCGGGCGGCGAGGAGGAAGACGAAGGAAGGGGGGGCATACAGGAAGCGC
CCGACTCTGGCGTCAATGGGCAACGCAGCTCTGGGAGGGGAAGGGAGGGG
AAGGAAGAGGCGGAGGACGGGGCGGAGGGTGGCCCGGGGGAGGGAATAGA
TGTACGTCCGGAGGCAAGGAGTGGGGCATTACGAGGTTTCCCTTGCCCCT
CACATCCCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGGATATCA
TGGAGGAGGTCCTCCGTTCGTATCCTCACACCCAAGCGTCCTCCTGCCCT
TCCTCCATGTCTTCTTTTCCCTCCCCGACCCTCAAGCCTGGCGCGCCCTG
GAAAGTCA
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protein sequence of rna7618

>rna7618-protein ID=rna7618-protein|Name=rna7618|organism=Nannochloropsis gaditana|type=polypeptide|length=338bp
MRSYELSEMRSHESSEMQGAGHTGGHSHGHYHHHHHGYHSHPPTRSPPHS
HPAPASLPPTSHPAPPLPAPRPHSSGQVPGIHVPHPHHYHHHQHRRSGYE
PPAWASPSLPGDRRGDTGALALPSAASKASTAALPTTYSPRQSPRSGPET
TAEAGPPCPPHPLLSHRERTLALRLFETQIQNDVSFALFRGEADKSTQAA
RENLLLRARTRDPTLFPVLEKALLQGKKPPLPLLVAKRAGWEGGEAEAST
VAAEAQEVLVWHLQNKALQVLVEVWKEGQREGGREEGKEQGATRREREGE
EEVDGFYITEAGRMKALGEASAFARLKGEKDTEVKVVE
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mRNA from alignment at CM002472.1:390110..391519+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7618 ID=rna7618|Name=rna7618|organism=Nannochloropsis gaditana|type=mRNA|length=1410bp|location=Sequence derived from alignment at CM002472.1:390110..391519+ (Nannochloropsis gaditana)
aaacCCCCACGCCAAGCCGCAGGAACCTCAGTACCCCTTGCCCAagccga
cctccccctcccaccccccctaccctggcctccacccgcccctccccgcc
ccgcacGACACTGCCtactcctcttccctcagcCCGCGctggcccccccc
cccgtccctccctcggcacaGCCTCCGCTAGCGGGGACGGAGCAGCGGCC
TGCCCCGCACGAATCTCTGGAGATGCGAAGCTATGAACTTTCCGAGATGC
GAAGCCATGAATCTTCCGAGATGCAGGGCGCTGGCCACACTGGAGGCCAT
TCGCACGGGCactaccaccaccaccaccacggaTACCAttctcatcctcc
caccCGTTCACCTCCACACTCGCACCCAGCGCCagcaagcctccctccca
cctcccaccctgccccgcccctccccgctccccgcccacATTCCTCAGGC
CAGGTCCCGGGTATTCATGTACCCCATCCTCACCAttatcaccaccacca
gcaccgtcGTTCCGGGTACGAACCGCCCGCTTgggcttccccttccctcc
ctggtgaCCGCCGCGGGGACACGGGCGCGTTGGCGTTGCCGTCTGCCGCG
TCAAAGGCGTCGACTGCTGCACTGCCCACGACGTATTCCCCTCGTCAAAG
CCCCCGATCCGGCCCCGAAACGACCGCGGAAGCgggtcctccttgccctc
cccacccgctcctctcccaccgcgaGCGGACCTTGGCCTTGCGTTTGTTT
GAAACGCAAATTCAAAACGACGTTTCCTTCGCCCTTTTTCGGGGGGAAGC
GGACAAATCCACCCAGGCGGCTCGGGAGAACCTCCTCTTACGCGCCCGCA
CGCGGGACCCTACCCTCTTCCCTGTCCTGGAGAAAGCTTTGCTGCAAGGG
AAAAAGCCCCCTTTGCCCTTGTTGGTGGCCAAGcgggcagggtgggaggg
cggggaggcggaggcaagCACGGTGGCCGCCGAGGCCCAGGAAGTGTTGG
TCTGGCATTTGCAAAACAAGGCGCTTCAGGTGCTGGTGGAAgtctggaag
gaggggcagagggagggggggagggaggaggggaaagagcagggggcgac
gcggcgggagagggaaggggaggaggaagtgtgaggaagggaagcggcca
ggcctgggggagggtgggacggagggcgggacggagggcgggaagcaggg
agggaggggattgAAGCATTGTGCATGTTGGTATGCTGACGGGAGGATAA
ATGACATGAATATTGAAGGAATAAAGGGGATTGCTATATGTGCCGATAAA
GCGATGGATTTTACATAACGGAGGCGGGCAGAATGAAGGCGTTGGGAGAA
GCCTCAGCGTTTGCGCGCCTGAAGGGCGAAAAAGACACAGAAGTTAAGGT
AGTGGAATGA
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Coding sequence (CDS) from alignment at CM002472.1:390110..391519+

>rna7618 ID=rna7618|Name=rna7618|organism=Nannochloropsis gaditana|type=CDS|length=2034bp|location=Sequence derived from alignment at CM002472.1:390110..391519+ (Nannochloropsis gaditana)
ATGCGAAGCTATGAACTTTCCGAGATGCGAAGCCATGAATCTTCCGAGAT
GCAGGGCGCTGGCCACACTGGAGGCCATTCGCACGGGCactaccaccacc
accaccacggaTACCAttctcatcctcccaccCGTTCACCTCCACACTCG
CACCCAGCGCCagcaagcctccctcccacctcccaccctgccccgcccct
ccccgctccccgcccacATTCCTCAGGCCAGGTCCCGGGTATTCATGTAC
CCCATCCTCACCAttatcaccaccaccagcaccgtcGTTCCGGGTACGAA
CCGCCCGCTTgggcttccccttccctccctggtgaCCGCCGCGGGGACAC
GGGCGCGTTGGCGTTGCCGTCTGCCGCGTCAAAGGCGTCGACTGCTGCAC
TGCCCACGACGTATTCCCCTCGTCAAAGCCCCCGATCCGGCCCCGAAACG
ACCGCGGAAGCgggtcctccttgccctccccacccgctcctctcccaccg
cgaGCGGACCTTGGCCTTGCGTTTGTTTGAAACGCAAATTCAAAACGACG
TTTCCTTCGCCCTTTTTCGGGGGGAAGCGGACAAATCCACCCAGGCGGCT
CGGGAGAACCTCCTCTTACGCGCCCGCACGCGGGACCCTACCCTCTTCCC
TGTCCTGGAGAAAGCTTTGCTGCAAGGGAAAAAGCCCCCTTTGCCCTTGT
TGGTGGCCAAGcgggcagggtgggagggcggggaggcggaggcaagCACG
GTGGCCGCCGAGGCCCAGGAAGTGTTGGTCTGGCATTTGCAAAACAAGGC
GCTTCAGGTGCTGGTGGAAgtctggaaggaggggcagagggaggggggga
gggaggaggggaaagagcagggggcgacgcggcgggagagggaaggggag
gaggaagtCGATGGATTTTACATAACGGAGGCGGGCAGAATGAAGGCGTT
GGGAGAAGCCTCAGCGTTTGCGCGCCTGAAGGGCGAAAAAGACACAGAAG
TTAAGGTAGTGGAATGAATGCGAAGCTATGAACTTTCCGAGATGCGAAGC
CATGAATCTTCCGAGATGCAGGGCGCTGGCCACACTGGAGGCCATTCGCA
CGGGCactaccaccaccaccaccacggaTACCAttctcatcctcccaccC
GTTCACCTCCACACTCGCACCCAGCGCCagcaagcctccctcccacctcc
caccctgccccgcccctccccgctccccgcccacATTCCTCAGGCCAGGT
CCCGGGTATTCATGTACCCCATCCTCACCAttatcaccaccaccagcacc
gtcGTTCCGGGTACGAACCGCCCGCTTgggcttccccttccctccctggt
gaCCGCCGCGGGGACACGGGCGCGTTGGCGTTGCCGTCTGCCGCGTCAAA
GGCGTCGACTGCTGCACTGCCCACGACGTATTCCCCTCGTCAAAGCCCCC
GATCCGGCCCCGAAACGACCGCGGAAGCgggtcctccttgccctccccac
ccgctcctctcccaccgcgaGCGGACCTTGGCCTTGCGTTTGTTTGAAAC
GCAAATTCAAAACGACGTTTCCTTCGCCCTTTTTCGGGGGGAAGCGGACA
AATCCACCCAGGCGGCTCGGGAGAACCTCCTCTTACGCGCCCGCACGCGG
GACCCTACCCTCTTCCCTGTCCTGGAGAAAGCTTTGCTGCAAGGGAAAAA
GCCCCCTTTGCCCTTGTTGGTGGCCAAGcgggcagggtgggagggcgggg
aggcggaggcaagCACGGTGGCCGCCGAGGCCCAGGAAGTGTTGGTCTGG
CATTTGCAAAACAAGGCGCTTCAGGTGCTGGTGGAAgtctggaaggaggg
gcagagggagggggggagggaggaggggaaagagcagggggcgacgcggc
gggagagggaaggggaggaggaagtCGATGGATTTTACATAACGGAGGCG
GGCAGAATGAAGGCGTTGGGAGAAGCCTCAGCGTTTGCGCGCCTGAAGGG
CGAAAAAGACACAGAAGTTAAGGTAGTGGAATGA
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Synonyms
Publications