rna7617, rna7617 (mRNA) Nannochloropsis gaditana

Overview
Namerna7617
Unique Namerna7617
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length600
Alignment locationCM002472.1:384928..385935 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101118g1.5744.mrna
Orig protein idgnl|cribi|Naga_101118g1.5744
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:384928..385935 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101118g1gene7375Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7617rna7617-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23076.1cds7597Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7617 ID=rna7617|Name=rna7617|organism=Nannochloropsis gaditana|type=mRNA|length=600bp
ATGAGTGCCCCAAAGACGACGACTTTCCATGTGGGTATGACCTGCGACGG
TTGCGCCAATGCCGTGAAGCGAATTCTTGGAAAGATGGAGGGTATGTTCT
CCTCGATGCTTCGAGCTGCATGTGTCGTCTGGTTCCTGCTTTCTGTTCCT
CTTTACCGATTGGCGCTTTTTTCTTTCTCCGCCTCGGCCCCTCAATACAA
AGCGTTTCGGTTGCAGGACAATGAGAGTGACGGCCATCGACACCAACGTC
CCCGAAAAGAAGGTGGTCGTCCAAACGGAGGACCACGTCCAGGGGACGGA
GCTGCTCACCGCGCTGGCAAAATGGGGGGAAGCCGCCGGGAAGGAGGTGA
AAATGCTGGCGTGACGCGAAGAGCCAGGAGAACCGACGGGGGAGAGAAGG
GAAGGAAAGCAAAGAGATTTGTACAAGTAGTACGCGAGGACCGGAGGGAG
GGGGGGAAGGAAGAGGGTTTAAAGTGGGTCAATCGACCTCGACGGGTACC
TAGCACCGTGACCGTTACCGTGACCGTTACAGGGCCCTTCCCGGGTCTGC
ACGTCACTGGCAACAAGAAGAAGACGGAGAAATATCACTCACACTTCTGA
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protein sequence of rna7617

>rna7617-protein ID=rna7617-protein|Name=rna7617|organism=Nannochloropsis gaditana|type=polypeptide|length=284bp
MEGGWIERRGRQEQSMKEEVLREEKGETEIKKEEEEWKDGREEEEAESQE
EIRGAVSSLVEGLAFEEKGESPEREEGRRERTRSQSGLKSRTVDGSSPLA
LHLASTMGSSKATGAAPGEDSSHFLEEGGREGPTLPVSASSASTSLSSSS
SPASSLVLVEGEGTGAGGEEEDEGRGGIQEAPDSGVNGQRSSGRGREGKE
EAEDGAEGGPGEGIDVRPEARSGALRGFPCPSHPSPSLPPSLPPSRISWR
RSSVRILTPKRPPALPPCLLFPPRPSSLARPGKS
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mRNA from alignment at CM002472.1:384928..385935+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7617 ID=rna7617|Name=rna7617|organism=Nannochloropsis gaditana|type=mRNA|length=1008bp|location=Sequence derived from alignment at CM002472.1:384928..385935+ (Nannochloropsis gaditana)
TCGAGGGACTTGGAGTcgtgtcttccttcccctcttttatCCCCCTGACA
AAGTTACTTCGTCCTCATTTATCTCTATCTGCATACAACATCTCTAGGCT
TGTAAATAAAGGGTCGAAGACACCTGGGCGGATCGCCCCGCACCCGGGCT
ATTGAAATGGAGGGTGGATGGATCGAGCGTCGCGGTCGGCAGGAACAGag
catgaaggaggaggtgctaagggaggaaaaaggagaaacagagatcaaaa
aggaagaggaagaatggaaagatgggagggaggaagaggaggcggaaagc
CAAGAGGAGATAAGGGGGGCTGTGTCGAGTCTCGTGGAGGGACTGGCGtt
cgaggaaaaaggggagagccccgagagggaggaagggagaagagagagga
ctAGAAGCCAAAGCGGGCTGAAGAGTAGGACGGTCGATGGAAGCTCACCA
TTGGCTCTTCACCTGGCGTCGACAATGGGCTCGTCAAAAGCAACGGGTGC
AGCACCCGGGGAGGACTCGAGCCATTTccttgaggagggaggacgagagg
gtcCGACGCTGCCCgtttccgcttcctccgcctcgacctccctctcttcc
tcctcctctcccgcgtcCTCGCTCGtcttggtggagggcgagggaaccgg
cgcgggcggcgaggaggaagacgaaggaagggggggcataCAGGAAGCGC
CCGACTCTGGCGTCAATGGGCAACGCAGCtctgggaggggaagggagggg
aaggaagaggcggaggacggggcggagggtggcccgggggagggaatagA
TGTACGTCCGGAGGCAAGGAGTGGGGCATTACGAGGtttcccttgcccct
cacatccctctccctccctccctccctccctccctccctccaggatATCA
TGGAGGAGGTCCTCCGTTCGTATCCTCACACCCAAgcgtcctcctgccct
tcctccatgtcttcttttccctccccgaccctCAAGCCTGGCGCGCCCTG
GAAAGTCA
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Coding sequence (CDS) from alignment at CM002472.1:384928..385935+

>rna7617 ID=rna7617|Name=rna7617|organism=Nannochloropsis gaditana|type=CDS|length=852bp|location=Sequence derived from alignment at CM002472.1:384928..385935+ (Nannochloropsis gaditana)
ATGGAGGGTGGATGGATCGAGCGTCGCGGTCGGCAGGAACAGagcatgaa
ggaggaggtgctaagggaggaaaaaggagaaacagagatcaaaaaggaag
aggaagaatggaaagatgggagggaggaagaggaggcggaaagcCAAGAG
GAGATAAGGGGGGCTGTGTCGAGTCTCGTGGAGGGACTGGCGttcgagga
aaaaggggagagccccgagagggaggaagggagaagagagaggactAGAA
GCCAAAGCGGGCTGAAGAGTAGGACGGTCGATGGAAGCTCACCATTGGCT
CTTCACCTGGCGTCGACAATGGGCTCGTCAAAAGCAACGGGTGCAGCACC
CGGGGAGGACTCGAGCCATTTccttgaggagggaggacgagagggtcCGA
CGCTGCCCgtttccgcttcctccgcctcgacctccctctcttcctcctcc
tctcccgcgtcCTCGCTCGtcttggtggagggcgagggaaccggcgcggg
cggcgaggaggaagacgaaggaagggggggcataCAGGAAGCGCCCGACT
CTGGCGTCAATGGGCAACGCAGCtctgggaggggaagggaggggaaggaa
gaggcggaggacggggcggagggtggcccgggggagggaatagATGTACG
TCCGGAGGCAAGGAGTGGGGCATTACGAGGtttcccttgcccctcacatc
cctctccctccctccctccctccctccctccctccaggatATCATGGAGG
AGGTCCTCCGTTCGTATCCTCACACCCAAgcgtcctcctgcccttcctcc
atgtcttcttttccctccccgaccctCAAGCCTGGCGCGCCCTGGAAAGT
CA
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Synonyms
Publications