rna7602, rna7602 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7602
Unique Name	rna7602
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1152
Alignment location	CM002472.1:350622..351769 -

Link to JBrowse

Properties


Property Name	Value
Product	uncharacterized protein
Orig transcript id	gnl\|cribi\|Naga_100536g4.9464.mrna
Orig protein id	gnl\|cribi\|Naga_100536g4.9464
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002472.1	supercontig	CM002472.1:350622..351769 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100536g4	gene7360	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23092.1	cds7582	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7602	rna7602-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002472.1:350622..351769-
coding sequence from alignment at CM002472.1:350622..351769-

mRNA sequence

>rna7602 ID=rna7602|Name=rna7602|organism=Nannochloropsis gaditana|type=mRNA|length=1152bp
CAACACCAGCTTTCATTTTACGCACAGATAGCTGACACAGGTGCTTTTAA
GTACTCCAAGGACTCCTTATTGAGGACAGCCAAGGCATCACAATCCCCTG
GCCTTCTTTTTCATCCCGCACGACTTCGTTTTGCAGGCTGGGGTGATTTT
TTCCTCGGACCGCGTCCCTACCCATCACGAATCAACGAGGCGCTGAGGTG
CTTTTAAGGTTTCCTGCGTCCACACACGTCCGTCTGGAAAACTACGGCTC
ATCCACAAAAGTACACACCCGGTCGCCACCTCGAACGCGGCCAAGTGCTT
TAGCCGTCAACAGACCTTTATCTTTCGCTTTTCCCCTTGACCAAGGGTCG
GCACCTCCTCCCTCCTCCTCCCAAACCCCATCCATTCCCATCGCCCGCCA
TGGCATCGGAAACATCCCTCCCGGACATGCTGGCCAGCGCCAAATCTTCT
TTGGCCCGGCACGACACGCAAGCCGCGAAGCGCCTGCTTCAGTCCATGAT
CGTCCAGGTCCTTCACCTTCAACGCCTTCACTCCAAGCAACGCGCCCCCC
CTCCCTCCTTTCCTCCCTCCTTTCACACGGGCATCAACCCCACGCCTCCC
CACGACTTCCCCGACCCCTCTCCGGCCCATCCCTCCCCTCCTGCGCCCGC
ACCCCCCCTGAACCTCCCTCAATTCAACGCCCTCGCCCTCTTTCACCTCG
GCCAAGCGCTCTACCAGGAGGGCGAGGACTGGGACCAGGCAGCCTACTGC
TTCCTTCTTGCCTCCAAACCCTGGCCACCCCTTGCGAACGTGGCCCGGGA
GCATTTTCGGGCCTTGTTCCCCGAGACCTCGGCCTTTTTCTCCCGGGAAA
TGAGGGACCTGGGCGTGGACGGCAGCCAACGGCTGACCGCCTTGTTCTGG
GACACGGAACGGCATTGGCAGTTGGCGCGGGCCATGACACGGAGCTTGAC
GGGGAGGCGAGGCGGTGAAGGAGGGACGGGGGGAGGGGGAGGGGGAGGGG
GAGGGCCGTGCGTTGTGGTTTTGGGCCCTTCCGCTTGTATTTTGGCGATC
TTGTTGGCCAGGCAGGTACGTCCAGCGAACAGGTGGTTTGAATTTTCAAA
AATTCTCATCTTTTTAAAATTGAAAATTTCTTCCTGTCGATGCTGGGATT
AG

protein sequence of rna7602

>rna7602-protein ID=rna7602-protein|Name=rna7602|organism=Nannochloropsis gaditana|type=polypeptide|length=166bp
MAGQARKKAQKAASTTGAFYWKVILGVNLLYALCLIYHIRQDTPSWHALQ
AWTWVQKVLFVSLTLLCYTLGYQGLVSAAASRMSASAYVDLLGITAAAQF
SSFVTRYFWVLYLVLPVAGVYLYVWPLLGMLRSMMGGRGRGGGRDRQKGE
RRSVEVTGGSEARKRQ

mRNA from alignment at CM002472.1:350622..351769-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7602 ID=rna7602|Name=rna7602|organism=Nannochloropsis gaditana|type=mRNA|length=1148bp|location=Sequence derived from alignment at CM002472.1:350622..351769- (Nannochloropsis gaditana)
CCATTGCCCCGCCCCTTAGGTCCCAAATATTCTGTAAGGCCTCCGAATAC
CTCGCACAGTACAAGGGGAATATCATATTTTGCCTGTATCTGTTGAAGAA
GGTTTGAAGAAAGGTGTAAAGCCGGTGGCATCCGCTCGTTGCGACATCAC
ATGTGTCGTTAAGCAGCAACCTTATTCTTTCAAACATCGTAGACTGCTCG
TACAGTGAGGGGGTTTGTCGCCCAGTAAAGAGAAAGAAGTGACTGTCTTA
CTGGACGGGTACCAACCTTGGAGCCTGTTCATGGACTTTGACGTATATTG
GCAGGGCAAGTCTCCTTTGCCTTCCAGGCAGCCCTTGTACAACACGTACG
AGCCGCATCCATAAATATTGGTGCATACCTCCGTGAAGCGAGGCTATTTC
AATTACTTGTCACTCGACGCTCATCCAATACATGCCATATTCCCGCCTCG
GAAGGAGTTACCAGCCATTTTGATTGAAACGTTCGTCTAGGTCTCGCACT
TCGTCTTACAGAGAGAGTTCCTCTTTCCCATCCACCCCTTCTCAAATCCT
TTCACCATTTGTTCGATTCCCGACAGGCATGGCTGGACAAGCCCGAAAGA
AAGCCCAAAAGGCCGCCTCCACCACCGGTGCTTTCTACTGGAAAGTGATC
CTCGGCGTGAACCTCCTGTACGCCCTTTGCCTCATTTACCATATCCGTCA
AGACACCCCGTCCTGGCATGCGTTGCAGGCATGGACCTGGGTGCAGAAGG
TGCTCTTTGTATCCTTGACCTTGCTTTGCTACACATTGGGGTACCAGGGT
CTGGTTTCCGCGGCCGCGTCACGCATGTCGGCCTCTGCCTACGTGGACTT
GCTGGGGATCACCGCCGCCGCTCAATTTAGCTCGTTTGTGACTCGATATT
TCTGGGTGCTCTACTTAGTGCTGCCTGTGGCAGGCGTGTACCTGTACGTG
TGGCCTTTGTTGGGAATGTTGCGGTCCATGATGGGGGGGAGGGGGAGGGG
GGGAGGGAGAGACCGCCAAAAAGGTGAAAGGCGGTCGGTCGAGGTGACAG
GGGGAAGTGAGGCGCGGAAAAGGCAATGAGGGAAGCTAAGGTTTCAGGAA
TGGGGCATCGAAGACCGAGATTTAAAGAAAAAAAGGAATCGGAATGCG

Coding sequence (CDS) from alignment at CM002472.1:350622..351769-

>rna7602 ID=rna7602|Name=rna7602|organism=Nannochloropsis gaditana|type=CDS|length=501bp|location=Sequence derived from alignment at CM002472.1:350622..351769- (Nannochloropsis gaditana)
ATGGCTGGACAAGCCCGAAAGAAAGCCCAAAAGGCCGCCTCCACCACCGG
TGCTTTCTACTGGAAAGTGATCCTCGGCGTGAACCTCCTGTACGCCCTTT
GCCTCATTTACCATATCCGTCAAGACACCCCGTCCTGGCATGCGTTGCAG
GCATGGACCTGGGTGCAGAAGGTGCTCTTTGTATCCTTGACCTTGCTTTG
CTACACATTGGGGTACCAGGGTCTGGTTTCCGCGGCCGCGTCACGCATGT
CGGCCTCTGCCTACGTGGACTTGCTGGGGATCACCGCCGCCGCTCAATTT
AGCTCGTTTGTGACTCGATATTTCTGGGTGCTCTACTTAGTGCTGCCTGT
GGCAGGCGTGTACCTGTACGTGTGGCCTTTGTTGGGAATGTTGCGGTCCA
TGATGGGGGGGAGGGGGAGGGGGGGAGGGAGAGACCGCCAAAAAGGTGAA
AGGCGGTCGGTCGAGGTGACAGGGGGAAGTGAGGCGCGGAAAAGGCAATG
A

Synonyms

Publications