rna7601, rna7601 (mRNA) Nannochloropsis gaditana

Overview
Namerna7601
Unique Namerna7601
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3086
Alignment locationCM002472.1:347616..348767 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100536g1.9462.mrna
Orig protein idgnl|cribi|Naga_100536g1.9462
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:347616..348767 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100536g1gene7359Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23090.1cds7581Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7601rna7601-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7601 ID=rna7601|Name=rna7601|organism=Nannochloropsis gaditana|type=mRNA|length=3086bp
CTCCAGTTCTCTTCTCGGGCAGCATCGCCGACAACATTCGAAAGGGCAAA
CCGGGGGCCTCAGACGAGGAAGTGGTGGCGGCGGCCAAGGCCGCCAATGC
CTACGACTTTTGCATCGAGTTCCCCGACGGGATGCAGACGGAAGTCGGGC
AACGCGGAAGCCAGCTCTCCGGGGGGCAAAAGCAGCGGATCGCCATCGCC
CGCGCCATCATCAAGAATCCGGCCATCCTCCTCCTTGACGAGGCCACCTC
CGCGCTCGACTCCCACTCAGAGAAGATCGTGCAAGAGGCCCTCGACAATT
TGGCGCGAAGCAAGAAGCGCACCACATTCGTGGTCGCCCACCGGCTTTCC
ACCATCCGAGAGGCGGACAAGATCGCCGTCATTGACAAAGGGCAGGTCAA
GGAGCTGGGCTCGCACGAGGAGCTGATGGCCCGCCAGGGGATCTACGCCG
AGCTGGTCGCCTTGCAGGGAGGGTCGGGCCGAGAGGAGGCAGTGGAAGGC
GCGGGCAAGGTCCAGGCGGAGGGCGGGGCGGAGGGCGGGGACGAGGTCTC
GCGGGTGAAATCTGTTTCCGTCAGCCGGCTTCCTTTGGGGGCGAGCATGC
GTCGCCTTTCCCGCGCTGTCAGCCAGGTCCTGCGGGAGAGTTTGCCTTTC
CAGGACGGGGTGGAGGGAGGGACGGAGGGCGCGGCCGAGGGCCGCCCCTC
CCTGTGGGGCTTGTCCTTCCGGCATTGGCCGTACCTGCTCGTAGGCTTGC
TGAGCAACTGCGCCCTGGGGGTGCTCTTTCCCTTTTGGGGCTACCTGTTG
GCGAACGTGATGAGCGTCTTCTATTCCACGGACCGAGACTACATCTTGGA
ACGGGGCAGCTTTTGGGCGGGCATGTTCGTGGTGCTCGGTTCTGCGGCCA
TTTTGTTCTATACCTTGGCCTTCTGGGGCTTGGGCAATGTCGCAGAGCGG
TTGGCCGCCTGGCTTCGAAAGGGTTGCTTCGAAGCCATGCTCAGGCAAAG
CATCGGCTGGTTCGACATGCCAAAGAACAACCTGGGGGCCCTCACTGCTC
GTCTGGAGACGGAGACCCAGCAGATCCACAAGATCAGTGGGGACATGCTC
GGCCGCCAGTGCCAGGCCTTCTTCACCCTCTTTGTCGGCCTCCTGATTGC
GTTTTCCTCCTCCTGGCGCATCGCTCTGGTCACCCTTGCCACTTTCCCCA
TCCAAGCTGCGGCCAACGCGATCCAGATGCAGGTGGCCCTCGGCCAAGTC
TCGGACGAACCCGGGAGCGAAGGCGGGGAGGAAGCCAACGGCCTCCTCTC
CGCCGCCATTGCCTCCATCCGTACCGTCTCGGCCTTTTCCATGCAGGAAG
GTTTGCTCGGCTCCTACCGGCGGGCGATCGCCCCCCTGGCGACCAAGAAG
AAGCTGACGGGCGTGATGAGCGGGGTCATTTTTGGACTCACCCAGTTCGT
GATGTTCGGGACCTACGGCCTCCTCTTTTGGTACGGGGGGAACCTGGTCT
CGGAAGGGAAAGCCACCTTCCAGGAGATGATGGAGGCCATCATGTCGATC
CTGATGGGGGCGATGGGCTTGGGCCAGGCCCTCACGGACATGGCGGACGT
GAAGGAGGGCCGGGCTGCGACCAACCGGGTATTGGACCTGATCTACAGCC
CTACACCCACCATCGACGCCCTCTCCCCTGCCGGGGCCAAGCTCAAGGAT
GTGAAGGGGGAGATCGAGTTCAAAGACATCAGCTTCCGGTACCCAGCCCG
CCTCGACCAGTACGTGCTGGGGGGTCCGGACAAGGCTGGCGGCTTCTCCC
TCCGTATTCCTCCCGGCCAGACCGTTGCCTTCGTGGGGCCCTCCGGCTCG
GGGAAAAGCACGACCGTGGCCCTCTCCCTCCGATTCTACGACCCGGAGGA
TGGACGGGTCACCCTGGACGGACATGATTTGAAGGCGTTGAACGTGAAGC
ACCTCAGGGAGCATGTCTCCTACGTCGGTCAAGAGCCCGTCCTGTTCAAG
GGCACCGTGGCCGAGAACATTGCCTACGGCTTGGAGGGCGCCTCGCGGGA
GCAGATCATCGCCGCGGCCAAGGCGGCCCATGCCCACGACTTCATCATGG
GCTTCACCCACGGATACGAGACGGACCTGGCGGAGGGGAGCATCAACGTG
AGCGGCGGCCAGAAGCAACGGCTGGCGATCGCCCGGGCGGTGATCAAAGA
TGCCCCCGTTCTCCTCTTGGACGAGGCCACCTCCGCCTTGGACAATGAGT
CGGAGCGCTTGGTCCAGGATGCCCTGGATGACCTCCAAAGGCAGAAGAAA
CGCACCACCTTGGTGATTGCCCATCGCCTCTCCACCATTCGAGACGCGGA
TTTGATCGTGGTCATGCGTCAAGGCGAAATCGTGGAGCATGGAAGCTTCC
AGAAGCTGATTCAGGACAAGAACGGGACCTTCTCGGCCTTGGCGCGCCAG
CAAGGACTGATTTGAGAGTGCCAAGCCGGGAGGCTTCATGGAATGTACCA
GATATACGCATACATACGTTGCGGCGATGAGACCGCTCGGTCGACATTAT
TATTATTATTATTACCTTGGGGCGGGGCGAAGGGATGGAAGGCATTTGGG
ACGCCTTCGGGCTCCTCGAATGAGTTTCCGGGCCAAGGTCCGCCTTCGCG
GCGCCTGGTCTACCGCGCGCGCATCCGGAAAGAAAAATATCCGAGAAGAG
GAAAAGGAAGTGAAAAAGGGTCTCATCGAACGTCTGCGTCGGTCGCGCAG
GAGGATGGCGACGGCGGGCGGACGACGAAAGAGTACCCGAGCAGTTTTAC
TTTAGACAATTGTGTTAAACATGACGGAGTGTGGCAGGCCTTCGTCTGTG
AAAACGTGGACCGGTGGCCACTGTGGGGTGCAGGACGGGAGAAGGGTCGG
GGAAGAAATCGGAAAAATTAACAGAGGACGTGCGGGGAGGGTGCCGGCAC
GACGTGGGCCCTCGATACCCCGCAGCAATCGCATTCCTCTTGCCAAGCCT
TGGGTTGTCGCGAATGGGAGCGAGACATTCCCCCTCCGAAGAAATCAAAG
TGCCGCGTCGCGTCTCCCAGGCGTCCGCCCCACACA
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protein sequence of rna7601

>rna7601-protein ID=rna7601-protein|Name=rna7601|organism=Nannochloropsis gaditana|type=polypeptide|length=250bp
MASETSLPDMLASAKSSLARHDTQAAKRLLQSMIVQVLHLQRLHSKQRAP
PPSFPPSFHTGINPTPPHDFPDPSPAHPSPPAPAPPLNLPQFNALALFHL
GQALYQEGEDWDQAAYCFLLASKPWPPLANVAREHFRALFPETSAFFSRE
MRDLGVDGSQRLTALFWDTERHWQLARAMTRSLTGRRGGEGGTGGGGGGG
GGPCVVVLGPSACILAILLARQVRPANRWFEFSKILIFLKLKISSCRCWD
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mRNA from alignment at CM002472.1:347616..348767-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7601 ID=rna7601|Name=rna7601|organism=Nannochloropsis gaditana|type=mRNA|length=1152bp|location=Sequence derived from alignment at CM002472.1:347616..348767- (Nannochloropsis gaditana)
CAACACCAGCTTTCATTTTACGCACAGATAGCTGACACAGGTGCTTTTAA
GTACTCCAAGGACTCCTTATTGAGGACAGCCAAGGCATCACAATCCCCTG
GCCTTCTTTTTCATCCCGCACGACTTCGTTTTGCAGGCTGGGGTGATTTT
TTCCTCGGACCGCGTCCCTACCCATCACGAATCAACGAGGCGCTGAGGTG
CTTTTAAGGTTTCCTGCGTCCACACACGTCCGTCTGGAAAACTACGGCTC
ATCCACAAAAGTACACACCCGGTCGCCACCTCGAACGCGGCCAAGTGCTT
TAGCCGTCAACAGACCTTTATCTTTCGCTTTTCCCCTTGACCAAGGGTCG
GCACCTCCTCCCTCCTCCTCCCAAACCCCATCCATTCCCATCGCCCGCCA
TGGCATCGGAAACATCCCTCCCGGACATGCTGGCCAGCGCCAAATCTTCT
TTGGCCCGGCACGACACGCAAGCCGCGAAGCGCCTGCTTCAGTCCATGAT
CGTCCAGGTCCTTCACCTTCAACGCCTTCACTCCAAGCAACGCGCCCCCC
CTCCCTCCTTTCCTCCCTCCTTTCACACGGGCATCAACCCCACGCCTCCC
CACGACTTCCCCGACCCCTCTCCGGCCCATCCCTCCCCTCCTGCGCCCGC
ACCCCCCCTGAACCTCCCTCAATTCAACGCCCTCGCCCTCTTTCACCTCG
GCCAAGCGCTCTACCAGGAGGGCGAGGACTGGGACCAGGCAGCCTACTGC
TTCCTTCTTGCCTCCAAACCCTGGCCACCCCTTGCGAACGTGGCCCGGGA
GCATTTTCGGGCCTTGTTCCCCGAGACCTCGGCCTTTTTCTCCCGGGAAA
TGAGGGACCTGGGCGTGGACGGCAGCCAACGGCTGACCGCCTTGTTCTGG
GACACGGAACGGCATTGGCAGTTGGCGCGGGCCATGACACGGAGCTTGAC
GGGGAGGCGAGGCGGTGAAGGAGGGACGGGGGGAGGGGGAGGGGGAGGGG
GAGGGCCGTGCGTTGTGGTTTTGGGCCCTTCCGCTTGTATTTTGGCGATC
TTGTTGGCCAGGCAGGTACGTCCAGCGAACAGGTGGTTTGAATTTTCAAA
AATTCTCATCTTTTTAAAATTGAAAATTTCTTCCTGTCGATGCTGGGATT
AG
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Coding sequence (CDS) from alignment at CM002472.1:347616..348767-

>rna7601 ID=rna7601|Name=rna7601|organism=Nannochloropsis gaditana|type=CDS|length=753bp|location=Sequence derived from alignment at CM002472.1:347616..348767- (Nannochloropsis gaditana)
ATGGCATCGGAAACATCCCTCCCGGACATGCTGGCCAGCGCCAAATCTTC
TTTGGCCCGGCACGACACGCAAGCCGCGAAGCGCCTGCTTCAGTCCATGA
TCGTCCAGGTCCTTCACCTTCAACGCCTTCACTCCAAGCAACGCGCCCCC
CCTCCCTCCTTTCCTCCCTCCTTTCACACGGGCATCAACCCCACGCCTCC
CCACGACTTCCCCGACCCCTCTCCGGCCCATCCCTCCCCTCCTGCGCCCG
CACCCCCCCTGAACCTCCCTCAATTCAACGCCCTCGCCCTCTTTCACCTC
GGCCAAGCGCTCTACCAGGAGGGCGAGGACTGGGACCAGGCAGCCTACTG
CTTCCTTCTTGCCTCCAAACCCTGGCCACCCCTTGCGAACGTGGCCCGGG
AGCATTTTCGGGCCTTGTTCCCCGAGACCTCGGCCTTTTTCTCCCGGGAA
ATGAGGGACCTGGGCGTGGACGGCAGCCAACGGCTGACCGCCTTGTTCTG
GGACACGGAACGGCATTGGCAGTTGGCGCGGGCCATGACACGGAGCTTGA
CGGGGAGGCGAGGCGGTGAAGGAGGGACGGGGGGAGGGGGAGGGGGAGGG
GGAGGGCCGTGCGTTGTGGTTTTGGGCCCTTCCGCTTGTATTTTGGCGAT
CTTGTTGGCCAGGCAGGTACGTCCAGCGAACAGGTGGTTTGAATTTTCAA
AAATTCTCATCTTTTTAAAATTGAAAATTTCTTCCTGTCGATGCTGGGAT
TAG
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Synonyms
Publications