rna7587, rna7587 (mRNA) Nannochloropsis gaditana

Overview
Namerna7587
Unique Namerna7587
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length884
Alignment locationCM002472.1:306371..307782 +

Link to JBrowse

Properties
Property NameValue
Product2-hydroxy-3-oxopropionate reductase
Orig transcript idgnl|cribi|Naga_100643g2.9563.mrna
Orig protein idgnl|cribi|Naga_100643g2.9563
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:306371..307782 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100643g2gene7344Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7587rna7587-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23107.1cds7567Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7587 ID=rna7587|Name=rna7587|organism=Nannochloropsis gaditana|type=mRNA|length=884bp
ACAAAAAAATACAGCACGGTCGACCCAAACTCACTTCCGCCCGTCCATAA
CGTCGCGTAGCCCCAGGCCCGGAAAGGGCAACAGCAACAGCAACCTGCAG
TTTAACTTGTCCTCCTTTCAGCCCCTACCGACAACAGCATGCATCCCTCA
TCACGAATAAGAAGATGTCATTGGCCATGGAGCCTTTGGACACTGGGTGG
GCTTGTTACCTCGCCCTGCACGGCATTTTTAGTTCCCTCTCCCTCCACAC
CATTATCGGCCCCTCGAGACACGCACGTGCCACATTGCCTGGCACCAATT
GTCGCCGCAACCAAGTCAGAGGCGTCTCATGCTAGCGGAACGCATGTACC
ACCCATGGTTGCTATTGTTGGGCAACCTGGTTCTGGACAGTCGACATTTT
CGCGCCTGCTTTTGCAGGACTTCCCCTCCCTGCGCCTCGTCTCCTCAAGC
TCAGAGCCAGGGGTTTTGCAGGACGTTCGTGCCATCTTCCAGGCCGCCGC
CGAAGACACGCACCCCCCTTCCCATCCCATCACTTTCCCACAGGCCCTAA
GTCAGGTCCTCGCGTCGCGGATCGATGTATTGAGTCGAGGGCCGACGCCT
CCTCCTCTTCTCTTGGACGCCTGGCCGCGGTCCGTTGAGGAATGGAAGGT
GGTGGAAGGACAGGAGGGCGGGAGGGAGGGCAGGGCATACCGGCTGAATG
CCTGCGTCTTTCTGGACACAGGTGAGGAGACGGAGGACGCGGATCTGCGG
GACCTGAGGGAGGCCTTAGGGGAGGGCGGGAAGGAGGGCGGGAAGGAGGG
CGGGAAGGCGTGGGTGGTGGAGAATTCGGGGGCGATCAAGGAAGTGTACG
CCCGGGTGAAAGCAATCTTGGCGCCCATCTTGCT
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protein sequence of rna7587

>rna7587-protein ID=rna7587-protein|Name=rna7587|organism=Nannochloropsis gaditana|type=polypeptide|length=360bp
MPSLPALSPSTFLHRSFYFLFVATMLLLHVSKAFHKPLPFSLLAPRRPHH
RRALLHTLVASASSSSPQNQKVGFVGLGYMGAGMVRRLLERGDDVIVWNR
SLRKSEALLAEYPAPRVTIASTPRQVLEEAGLMTFSMLSTPEAAHAVFEG
PDGVLAGVGPGTNLVDCATLEVKDMQSFDAAVREKGGRFLEAPVSGSKVP
AEQGQLVFLTAGDQELFQLAQPYLEAMGKANVFLGTTGKGTEMKLVVNMV
MATMMTSLAEGLNLAGKAGIDPAEVVKVLGLGAMANPMFALKGPKILQDD
HTPNFPLKHAQKDLAFALTLAGQLGARVPTAQAADEEYRKALAAGEGERD
FSAVAHRLME
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mRNA from alignment at CM002472.1:306371..307782+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7587 ID=rna7587|Name=rna7587|organism=Nannochloropsis gaditana|type=mRNA|length=1412bp|location=Sequence derived from alignment at CM002472.1:306371..307782+ (Nannochloropsis gaditana)
ACATCAGTATTATGTGCCCATAAGGGTGTTCTTAGCATGTCATCGCGAAG
TGTACGGTAAAGCGGTGACATGGTCATAATTAAGTTAGACAGGCGCCTTG
CTTGCAACGGGCTTCGACCTGGTATCCCATATACAGCGTATTTCGTCTAA
ACTCTACCACGGACGTCTCACACTGGACAGAGTAATGCCGTCGTTGCCTG
CATTGTCCCCTTCAACATTTCTCCACCGGTCCTTTTACTTCCTTTTTGTT
GCCACcatgcttctccttcatgtctccaaggccttccataagcctcttcc
cttctcactccttgccccccgccgtcctcaccACCGCCGTGCCTTACTCC
ATACACTCGTAGcatctgcttcctcttcatctccccAAAACCAAAAGGTG
GGCTTCGTCGGCTTGGGTTACATGGGAGCCGGCATGGTCCGTCGCCTCCT
CGAGCGAGGGGACGACGTGATTGTGTGGAATAGAAGTCTGCGCAAGAGCG
AAGCCCTCTTAGCCGAATACCCTGCGCCCCGCGTAACAATCGCATCGACT
CCCAGACAagtcctggaggaggcaggtctCATGACCTTTTCCATGCTCTC
CACTCCCGAAGCCGCCCATGCCGTTTTTGAAGGGCCCGACGGCGTACTGG
CCGGCGTCGGCCCTGGGACCAATTTGGTGGATTGTGCCACCTTGGAGGTG
AAAGACATGCAAAGCTTCGACGCTGCCGTACGGGAAAAGGGCGGTCGTTT
CCTCGAAGCGCCCGTGTCGGGGAGCAAGGTACCGGCAGAACAGGGGCAAT
TGGTATTTTTGACGGCGGGGGACCAAGAATTGTTCCAGCTTGCACAACCC
TACTTAGAAGCAATGGGGAAAGCGAATGTCTTTCTGGGGACCACGGGAAA
GGGAACGGAGATGAAGCTGGTCGTGAACATGGTCATGGCGACCATGATGA
CGTCCCTGGCCGAAGGCTTGAATTTGGCGGGAAAGGCCGGCATCGACCCA
GCGGAAGTAGTGAAGGTCCTGGGTTTAGGTGCCATGGCCAATCCGATGTT
TGCTCTGAAAGGGCCCAAAATCCTCCAAGATGATCACACCCCGAACTTCC
CCCTAAAACATGCCCAGAAAGATTTGGCCTTTGCGTTGACTTTGGCGGGA
CAGCTGGGTGCCCGGGTGCCGACGGCGCaggcggcggacgaggaataTCG
AAAGGCATtagcggcgggggagggcgagagagacTTCTCTGCAGTAGCTC
ACAGGTTGATGGAGTGAGACTGGGAGTGTTGGGGCGGTTGCCCAGGCGGC
CACCGCTTTTTGACAtaggaaaggatggatgaGATACGTAGGTCAAGAAA
GTCTTCACGTCAGGGAAACAAAGTTGGTGGTATAGCTGTCATTTTAGCCT
TGAAAAGGGTAA
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Coding sequence (CDS) from alignment at CM002472.1:306371..307782+

>rna7587 ID=rna7587|Name=rna7587|organism=Nannochloropsis gaditana|type=CDS|length=1083bp|location=Sequence derived from alignment at CM002472.1:306371..307782+ (Nannochloropsis gaditana)
ATGCCGTCGTTGCCTGCATTGTCCCCTTCAACATTTCTCCACCGGTCCTT
TTACTTCCTTTTTGTTGCCACcatgcttctccttcatgtctccaaggcct
tccataagcctcttcccttctcactccttgccccccgccgtcctcaccAC
CGCCGTGCCTTACTCCATACACTCGTAGcatctgcttcctcttcatctcc
ccAAAACCAAAAGGTGGGCTTCGTCGGCTTGGGTTACATGGGAGCCGGCA
TGGTCCGTCGCCTCCTCGAGCGAGGGGACGACGTGATTGTGTGGAATAGA
AGTCTGCGCAAGAGCGAAGCCCTCTTAGCCGAATACCCTGCGCCCCGCGT
AACAATCGCATCGACTCCCAGACAagtcctggaggaggcaggtctCATGA
CCTTTTCCATGCTCTCCACTCCCGAAGCCGCCCATGCCGTTTTTGAAGGG
CCCGACGGCGTACTGGCCGGCGTCGGCCCTGGGACCAATTTGGTGGATTG
TGCCACCTTGGAGGTGAAAGACATGCAAAGCTTCGACGCTGCCGTACGGG
AAAAGGGCGGTCGTTTCCTCGAAGCGCCCGTGTCGGGGAGCAAGGTACCG
GCAGAACAGGGGCAATTGGTATTTTTGACGGCGGGGGACCAAGAATTGTT
CCAGCTTGCACAACCCTACTTAGAAGCAATGGGGAAAGCGAATGTCTTTC
TGGGGACCACGGGAAAGGGAACGGAGATGAAGCTGGTCGTGAACATGGTC
ATGGCGACCATGATGACGTCCCTGGCCGAAGGCTTGAATTTGGCGGGAAA
GGCCGGCATCGACCCAGCGGAAGTAGTGAAGGTCCTGGGTTTAGGTGCCA
TGGCCAATCCGATGTTTGCTCTGAAAGGGCCCAAAATCCTCCAAGATGAT
CACACCCCGAACTTCCCCCTAAAACATGCCCAGAAAGATTTGGCCTTTGC
GTTGACTTTGGCGGGACAGCTGGGTGCCCGGGTGCCGACGGCGCaggcgg
cggacgaggaataTCGAAAGGCATtagcggcgggggagggcgagagagac
TTCTCTGCAGTAGCTCACAGGTTGATGGAGTGA
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Synonyms
Publications