rna758, rna758 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna758
Unique Name	rna758
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1384
Alignment location	CM002456.1:354697..356154 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100035g20.3377.mrna
Orig protein id	gnl\|cribi\|Naga_100035g20.3377
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:354697..356154 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100035g20	gene727	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna758	rna758-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29913.1	cds758	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:354697..356154-
coding sequence from alignment at CM002456.1:354697..356154-

mRNA sequence

>rna758 ID=rna758|Name=rna758|organism=Nannochloropsis gaditana|type=mRNA|length=1384bp
CGTGGCGTTCTTTCATTATGCTCACAACCACAGAAACCACAGCATTGTAT
CTTAAGGGTCAGAATGACGGCAAATGGCGCGAGGGAGGTGATAGATGTGA
TGTCCAAGGCCCAATGGGACACACTTCTAAAAGATGATTTCCCGACTGTA
GCCTTCTTTTGGGCAGACTGGCACGAGCCGTCGAAACCACAAGGACAAAT
GGATTCTGTTTTCACGCATTTGGCGGCTCTGCATCCATCCTTGCGATTCC
TGCGCGTCGAAGCCGAGGCCGTCCCCGAAGTCTCTGTCCTCTTTGGGATA
TCCGTAGTCCCAAGTTTCGTCTTCTTCCAGAAAGGAAAGGTCGCAGACAA
GCAAGAAGGGGCCCACCCTGCGGAATTAGCCAAGAAAATTCAGAGTCTCA
GCGCGGCTGCGGCTGCTTTGTCCACGCGCACGGGCAACAGTGACGCCGTG
CTCGTGGCTGCCAACGCGACGACGGTCAAGGAAACGGCGTCGGGCAGCAC
TGGGGGTTTGAACCATCGATTGAAAGCGCTGATCACGCAGGCCCCTGTGG
TCCTCTTCATGAAAGGCTCCTCTTCCAATCCTCGCTGCGGCTTTTCCCGG
TCCATGGTCGAGCTCCTGAAGACGGAGAAGATTGCGTTTGCATCCTTCGA
CATATTGCAAGACGATGAGGTGAGGCAAGGACTCAAGGATTACTCGGACT
GGAAAACGTATCCGCAGCTGTACGTCAACGGTGAGCTGGTGGGGGGGCTG
GACATTGTCAAGGAGATGGTGGTGGAGGGAGCGTCCGGGCGCTTGAAAGA
GGCCTTGGGCATCAAGGAACTTCCCGAGTCGGATGCGGCGTCTCCTGCCG
ACGATGTCAACCCTCTGGAGACGCGCCTAAAGGCTCTCGTCAATGCGGCT
CCCGTCATGCTCTTCATGAAGGGAGACCCCGCGGCTCCCAAGTGTGGATT
TAGCAACCAAATGGTCAGCATCTTGAAGAAAACAGGCGTGGCGTTTCAAA
GCTTTGACATCTTGCAAGACGAGGAGGTGAGGCAAGGACTGAAAAAAATC
TCGCAGTGGCCGACGTACCCTCAGCTGTACGTGAAGGGCGAGCTGGTGGG
AGGGCTGGATATTGTCAAGGAGATGGAGGAAGGAGGGGAGCTCGATAGTG
CTCTAAAGGGGTGATAAGACTGGGCGAGGGGCACGCCACGGACATGCATG
CGAAATGCGTCAAGCTGAAAGAAATCATGGCTGGAAAAATTCCTTCCAGG
GGTCGCGGCTTCGCGAAGTTCTCCATTTTACTTTCTCATTTGCCCTGTTT
ATGTGCTTATGAAGTCGGTACCAGGCAAGGAGGCCTGAAGACAGCTATGG
AGGACCTCCTGTAATGCCACCATCCAGCCTGTCT

protein sequence of rna758

>rna758-protein ID=rna758-protein|Name=rna758|organism=Nannochloropsis gaditana|type=polypeptide|length=355bp
MSPLSQEEFKQLQDVVMSTSPDSLKPQAALTFLKERELSHPKRRLQLSST
QLSYLLILASSYESKKSLVLLLAPYVTPENATSMKAIVDQFPPPTDRAEI
ASLLMKNMRCNDAQKGSGPSFFRKDLGLATTNHGSSPLVSGPPGSSNTIG
SGSDIFPMPQPHPRKGQYQQQLSHLQQHQQISSGRGSAPVPTVAAMELSS
NSEDSSSCSGSGDEGGDEGSSCNGIESRGGSTLNSQEDVDELGGPGGGRE
GGGCSPSYGASTASTAPSVLSFMTSGAGGGSSAGAGATASVVDSLVVVGS
VATTLSSYDSTGSLSTIESSASTEVSQRRPFQHRSSFLKPVSGPPGGGGS
NGDET

mRNA from alignment at CM002456.1:354697..356154-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna758 ID=rna758|Name=rna758|organism=Nannochloropsis gaditana|type=mRNA|length=1458bp|location=Sequence derived from alignment at CM002456.1:354697..356154- (Nannochloropsis gaditana)
ATGTCACCACTTTCGCAAGAGGAGTTCAAGCAGTTGCAGGATGTTGTGAT
GTCAACGAGGTGGGTCGTGATATAGTAATCGAGAAGCAGAACGCGTTTGG
CTCGCCAGTTTGCTCTATTTGAGGCAAGCTACGCACGATCATACCAAAAA
GACCACCTTTAAGAAATGAACAAGAAATAGGCACCATGAAAGTGCACGAC
ATGTAATTGACTTTCTGCTTTACCCGACTCCCTCCATTCTTTTTGCACAG
CCCCGACTCCCTCAAGCCTCAAGCCGCCTTGACCTTTTTGAAGGAGAGGG
AACTCAGCCACCCGAAACGAAGGCTTCAACTATCATCGACGCAGCTTTCA
TACCTTCTCATTCTTGCCTCGTCCTATGAAAGCAAAAAGTCCCTGGTTCT
GCTCTTGGCCCCATACGTGACTCCGGAAAATGCGACCAGTATGAAAGCTA
TCGTGGATCAATTTCCCCCCCCAACAGATGTGAGTGGCTCTCTTTACTTT
ACCTGTGACCTTCACAACCTGAGTGGAAGCTTGTATACCAAGGACACACT
CTTCAGACCTTGAGTCGTCCGGGGGGGCTGAGAACCAACTTAATTGCCAT
GCTCTCTGTCCCTCCCCTCTCTTCCCTATTTCCTTGCCTCACGCCTCATG
CATCCTGGTTTCGTCCGTACCACCACAGCGGGCAGAAATTGCCAGCCTTT
TGATGAAAAATATGCGATGCAATGATGCTCAAAAAGGGTCGGGCCCATCT
TTCTTTCGAAAAGACTTGGGTCTGGCAACCACGAACCATGGATCTTCCCC
CCTCGTTTCGGGGCCACCCGGGAGCAGCAACACCATCGGCAGCGGCAGTG
ACATCTTTCCGATGCCACAGCCACATCCGCGAAAAGGTCAGTACCAGCAA
CAGCTTTCGCACCTGCAGCAGCATCAGCAGATATCGTCCGGGAGGGGTTC
TGCGCCTGTGCCAACGGTTGCGGCTATGGAGCTAAGCAGCAACAGTGAGG
ACAGCAGCAGTTGTTCAGGTAGCGGGGACGAAGGAGGGGATGAAGGCAGT
AGTTGTAATGGGATCGAGAGCCGAGGCGGGAGTACTCTGAATTCCCAGGA
GGACGTGGACGAGCTAGGGGGGCCGGGAGGAGGGCGGGAAGGTGGAGGGT
GCTCTCCTTCTTATGGCGCAAGCACAGCCTCCACAGCTCCGAGTGTCCTC
AGCTTCATGACAAGTGGAGCAGGAGGCGGAAGTAGTGCAGGAGCTGGTGC
AACAGCGAGCGTAGTGGATAGCTTGGTGGTTGTCGGTTCGGTCGCTACCA
CTTTAAGTAGCTATGACTCAACTGGCTCGTTGTCCACAATAGAAAGCAGC
GCTTCCACCGAGGTGTCACAACGACGGCCATTTCAACACCGCTCCTCATT
TTTAAAGCCTGTGTCAGGACCCCCAGGGGGTGGGGGCAGCAACGGGGATG
AGACGTGA

Coding sequence (CDS) from alignment at CM002456.1:354697..356154-

>rna758 ID=rna758|Name=rna758|organism=Nannochloropsis gaditana|type=CDS|length=3204bp|location=Sequence derived from alignment at CM002456.1:354697..356154- (Nannochloropsis gaditana)
CGGGCAGAAATTGCCAGCCTTTTGATGAAAAATATGCGATGCAATGATGC
TCAAAAAGGGTCGGGCCCATCTTTCTTTCGAAAAGACTTGGGTCTGGCAA
CCACGAACCATGGATCTTCCCCCCTCGTTTCGGGGCCACCCGGGAGCAGC
AACACCATCGGCAGCGGCAGTGACATCTTTCCGATGCCACAGCCACATCC
GCGAAAAGGTCAGTACCAGCAACAGCTTTCGCACCTGCAGCAGCATCAGC
AGATATCGTCCGGGAGGGGTTCTGCGCCTGTGCCAACGGTTGCGGCTATG
GAGCTAAGCAGCAACAGTGAGGACAGCAGCAGTTGTTCAGGTAGCGGGGA
CGAAGGAGGGGATGAAGGCAGTAGTTGTAATGGGATCGAGAGCCGAGGCG
GGAGTACTCTGAATTCCCAGGAGGACGTGGACGAGCTAGGGGGGCCGGGA
GGAGGGCGGGAAGGTGGAGGGTGCTCTCCTTCTTATGGCGCAAGCACAGC
CTCCACAGCTCCGAGTGTCCTCAGCTTCATGACAAGTGGAGCAGGAGGCG
GAAGTAGTGCAGGAGCTGGTGCAACAGCGAGCGTAGTGGATAGCTTGGTG
GTTGTCGGTTCGGTCGCTACCACTTTAAGTAGCTATGACTCAACTGGCTC
GTTGTCCACAATAGAAAGCAGCGCTTCCACCGAGGTGTCACAACGACGGC
CATTTCAACACCGCTCCTCATTTTTAAAGCCTGTGTCAGGACCCCCAGGG
GGTGGGGGCAGCAACGGGGATGAGACGTGACCCCGACTCCCTCAAGCCTC
AAGCCGCCTTGACCTTTTTGAAGGAGAGGGAACTCAGCCACCCGAAACGA
AGGCTTCAACTATCATCGACGCAGCTTTCATACCTTCTCATTCTTGCCTC
GTCCTATGAAAGCAAAAAGTCCCTGGTTCTGCTCTTGGCCCCATACGTGA
CTCCGGAAAATGCGACCAGTATGAAAGCTATCGTGGATCAATTTCCCCCC
CCAACAGATATGTCACCACTTTCGCAAGAGGAGTTCAAGCAGTTGCAGGA
TGTTGTGATGTCAACGAGCGGGCAGAAATTGCCAGCCTTTTGATGAAAAA
TATGCGATGCAATGATGCTCAAAAAGGGTCGGGCCCATCTTTCTTTCGAA
AAGACTTGGGTCTGGCAACCACGAACCATGGATCTTCCCCCCTCGTTTCG
GGGCCACCCGGGAGCAGCAACACCATCGGCAGCGGCAGTGACATCTTTCC
GATGCCACAGCCACATCCGCGAAAAGGTCAGTACCAGCAACAGCTTTCGC
ACCTGCAGCAGCATCAGCAGATATCGTCCGGGAGGGGTTCTGCGCCTGTG
CCAACGGTTGCGGCTATGGAGCTAAGCAGCAACAGTGAGGACAGCAGCAG
TTGTTCAGGTAGCGGGGACGAAGGAGGGGATGAAGGCAGTAGTTGTAATG
GGATCGAGAGCCGAGGCGGGAGTACTCTGAATTCCCAGGAGGACGTGGAC
GAGCTAGGGGGGCCGGGAGGAGGGCGGGAAGGTGGAGGGTGCTCTCCTTC
TTATGGCGCAAGCACAGCCTCCACAGCTCCGAGTGTCCTCAGCTTCATGA
CAAGTGGAGCAGGAGGCGGAAGTAGTGCAGGAGCTGGTGCAACAGCGAGC
GTAGTGGATAGCTTGGTGGTTGTCGGTTCGGTCGCTACCACTTTAAGTAG
CTATGACTCAACTGGCTCGTTGTCCACAATAGAAAGCAGCGCTTCCACCG
AGGTGTCACAACGACGGCCATTTCAACACCGCTCCTCATTTTTAAAGCCT
GTGTCAGGACCCCCAGGGGGTGGGGGCAGCAACGGGGATGAGACGTGACC
CCGACTCCCTCAAGCCTCAAGCCGCCTTGACCTTTTTGAAGGAGAGGGAA
CTCAGCCACCCGAAACGAAGGCTTCAACTATCATCGACGCAGCTTTCATA
CCTTCTCATTCTTGCCTCGTCCTATGAAAGCAAAAAGTCCCTGGTTCTGC
TCTTGGCCCCATACGTGACTCCGGAAAATGCGACCAGTATGAAAGCTATC
GTGGATCAATTTCCCCCCCCAACAGATATGTCACCACTTTCGCAAGAGGA
GTTCAAGCAGTTGCAGGATGTTGTGATGTCAACGAGCGGGCAGAAATTGC
CAGCCTTTTGATGAAAAATATGCGATGCAATGATGCTCAAAAAGGGTCGG
GCCCATCTTTCTTTCGAAAAGACTTGGGTCTGGCAACCACGAACCATGGA
TCTTCCCCCCTCGTTTCGGGGCCACCCGGGAGCAGCAACACCATCGGCAG
CGGCAGTGACATCTTTCCGATGCCACAGCCACATCCGCGAAAAGGTCAGT
ACCAGCAACAGCTTTCGCACCTGCAGCAGCATCAGCAGATATCGTCCGGG
AGGGGTTCTGCGCCTGTGCCAACGGTTGCGGCTATGGAGCTAAGCAGCAA
CAGTGAGGACAGCAGCAGTTGTTCAGGTAGCGGGGACGAAGGAGGGGATG
AAGGCAGTAGTTGTAATGGGATCGAGAGCCGAGGCGGGAGTACTCTGAAT
TCCCAGGAGGACGTGGACGAGCTAGGGGGGCCGGGAGGAGGGCGGGAAGG
TGGAGGGTGCTCTCCTTCTTATGGCGCAAGCACAGCCTCCACAGCTCCGA
GTGTCCTCAGCTTCATGACAAGTGGAGCAGGAGGCGGAAGTAGTGCAGGA
GCTGGTGCAACAGCGAGCGTAGTGGATAGCTTGGTGGTTGTCGGTTCGGT
CGCTACCACTTTAAGTAGCTATGACTCAACTGGCTCGTTGTCCACAATAG
AAAGCAGCGCTTCCACCGAGGTGTCACAACGACGGCCATTTCAACACCGC
TCCTCATTTTTAAAGCCTGTGTCAGGACCCCCAGGGGGTGGGGGCAGCAA
CGGGGATGAGACGTGACCCCGACTCCCTCAAGCCTCAAGCCGCCTTGACC
TTTTTGAAGGAGAGGGAACTCAGCCACCCGAAACGAAGGCTTCAACTATC
ATCGACGCAGCTTTCATACCTTCTCATTCTTGCCTCGTCCTATGAAAGCA
AAAAGTCCCTGGTTCTGCTCTTGGCCCCATACGTGACTCCGGAAAATGCG
ACCAGTATGAAAGCTATCGTGGATCAATTTCCCCCCCCAACAGATATGTC
ACCACTTTCGCAAGAGGAGTTCAAGCAGTTGCAGGATGTTGTGATGTCAA
CGAG

Synonyms

Publications