rna7578, rna7578 (mRNA) Nannochloropsis gaditana

Overview
Namerna7578
Unique Namerna7578
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2036
Alignment locationCM002472.1:290527..290877 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100316g4.2356.mrna
Orig protein idgnl|cribi|Naga_100316g4.2356
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:290527..290877 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100316g4gene7335Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23113.1cds7558Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7578rna7578-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7578 ID=rna7578|Name=rna7578|organism=Nannochloropsis gaditana|type=mRNA|length=2036bp
TGCTTTCAGAAGCTCCCTGATGTCCAAACCCGCCATCTATCAGTACGTGT
CGGTGTATCGACGATGGCTTCTTGCTTAATTGGACTCTGCCCGCGCACAC
AAATGAACAGGCTGCATCTCTTGAAAGTGAAAGAAGGTCGCCGTTCCTTT
CTGTTGCTGCCTCACGGATTCTTGTGACAGTCTACCTGTCCACATATTAT
TTCCATGTTGGAAATTTACCTTTCCCTTGTCCGCAATGCTGCCTCGGTCG
TCAAAAGCACACTACCCTCTACGCACATCTTGCGGAGCCCTCTTTGCAAT
CTCGCCTCCACGGAATCCCTCCTGCATTTGCAAATATCGATGTATCCCCT
GATCGACCTGATAATCGCTCCTTTGCAGCTCGTAGCGGGAGTGTCCGGAG
GCATCGGGGGCGTGTTCGACCTGATACTCGCCTTGCAACAATGGCGACGC
ACGAAAGCATGGTCCACAGGGACACAACATATGGAATCTCGCACATATGG
TAGAGAACTGCGGGACATGCGGGCAAGGGCGGAGAAAGAGGTGGAGAAAG
CCCGGGATCGGGTGACGGATGCGTGTTTTCGTATCATTTTTGGCCTCTTT
TTCTACGTCTTCTTCCTTAGCACTTTGCAAAAAGCGGACGAGAGGATGAT
TCAGTGGACGTTATTCCTGATGGAAGTGGCAGCGTTGGCCTGCCTTGTGA
GGGGGGCGCAGAGCGTCCTGGCGCGTCGCGAACGAGCTTTACATCTTCTT
TCTCTCAATCCAGCGGACCTACTTTCCGCCTTGAGCCAATTGGAAAATGG
GTCAACGGCCTTTTTGCCTCATGAGCTGATGGACTTCGCCGAAAATCGCC
TCGTTTTCACGTGGGATAATCCGCAACCCTACCACCCTTACGCCCTACTC
TCGGACTTGGAGCATCTTCACTCCGCGTACACCCGTTTTCACGGTGTCCT
GTCGCGTTTCAAAACCGGGAAAGACTCGGATGCGGAGGTTGATGTCCGCG
AAATGCTCCATCGGATGCAGAGGCAGGCCCGGGCCCTCCTCTCCCTTTGC
GCCATGGACGCCCTCGTCCTCCTCTTCAACGCCGTCGCCTTCCTTGGATA
TCTATTCTTCCCCCTTGTCTGGCTCTTCCCGGACGAGGCTTGGTACCACA
GGGCTTTCTCGGGGCGACTGTTGATCTACCCTGGCCATGCCTTTATCTTG
GACCGAGGGGCCTTCATCGGAGACGTCATGTGGACCTTGGAGCCGGCCTG
TCTCCTTGCTGCCAGCCTGATCCGACGGACAGTGGAGACCCGTCTGATGC
CTCCGGAGCCCGAATTTAATACTCGCACGTCGGACGTAAATAGGTACGCG
AGACCGAAAGTGGGAGAAGGAGCAAAATGGCATGAGGAAAGGACGCAGGG
GGCCGAGTGCGTGAGAATGAGGAACAGTAGCCGAGCGAGAAAGAAAAAAG
GAGAAGAAAAGGATCTTGAAAGTGAGCTTGGGTCGAACAAGAAGGGAGAC
TTGAGTAAGCGAAGGGTCCTCCACGAAAGGAGGAAAGGAGAACGGGGGTC
GCTCGATAGTAGAGATGGGGAGACGCACGGGAAGGTGAATGGAGGCGGGA
GAACAAGAGAGCCGCGCGTCTCTGCAGTGAAAGACCCATTATCGTCTGTT
TCCACTCGAACGCGTGCGCGACTGAGTATGCACGGACAGAAAGGGCCAGA
GCTATAAGTTCCTCCGGCTCTTACCCATTCCACTCGTACGAGAAGTAAAC
GAGGGGACAGGGAGTAGCGCTAGCCGCGGAACGAGCGATCCCGAAAAGAA
ATTTTTGTGTATGGATGGACGATAATTGGTTAAAAAGACAAATCTGTGTG
CGGAAGAATTTGTGTGAGTTCCTGGTTTGAGGGCCAAGTGCCCGCTTGTG
AAGAAAGCTGTCAGTATCGATTCGGATGCCACTTCTTTTTTTCTTTTCCC
TTTAAAGAAGGGCAGCGCATGTATTATTGTAGTGTTGTAGCGGTGATAAA
TGTGATAAGATGGATGGGAAAGCATCAAAAAGTGCC
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protein sequence of rna7578

>rna7578-protein ID=rna7578-protein|Name=rna7578|organism=Nannochloropsis gaditana|type=polypeptide|length=116bp
MEKKGKGQTEEKWMAMQEDEEARLAASFFVQDDARREDNEDSGEQEHTAT
AGDIGGGADGACAGVYGEGEEVEQEQEQEQKHVMLLQLVGGAGRRVGERG
WGGAGGGDSWLLRDGQ
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mRNA from alignment at CM002472.1:290527..290877-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7578 ID=rna7578|Name=rna7578|organism=Nannochloropsis gaditana|type=mRNA|length=351bp|location=Sequence derived from alignment at CM002472.1:290527..290877- (Nannochloropsis gaditana)
ATGGAGAAGAAAGGAAAAGGACAGACGGAGGAAAAATGGATGGCAATGCA
GGAGGACGAGGAGGCACGGCTTGCCGCATCGTTCTTCGTGCAAGACGATG
CGCGCCGGGAAGACAACGAGGACAGCGGCGAGCAGGAGCACACGGCGACG
GCGGGCGATATAGGTGGTGGGGCTGATGGGGCTTGCGCGGGAGTGTATGG
GGAAGGGGAAGAGGTGGAGCAGGAGCAGGAACAGGAACAGAAGCACGTAA
TGTTGCTGCAGCTGGTGGGGGGGGCGGGGCGCAGGGTGGGGGAAAGGGGA
TGGGGAGGAGCAGGAGGAGGAGATTCTTGGCTACTGCGAGACGGCCAATG
A
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Coding sequence (CDS) from alignment at CM002472.1:290527..290877-

>rna7578 ID=rna7578|Name=rna7578|organism=Nannochloropsis gaditana|type=CDS|length=351bp|location=Sequence derived from alignment at CM002472.1:290527..290877- (Nannochloropsis gaditana)
ATGGAGAAGAAAGGAAAAGGACAGACGGAGGAAAAATGGATGGCAATGCA
GGAGGACGAGGAGGCACGGCTTGCCGCATCGTTCTTCGTGCAAGACGATG
CGCGCCGGGAAGACAACGAGGACAGCGGCGAGCAGGAGCACACGGCGACG
GCGGGCGATATAGGTGGTGGGGCTGATGGGGCTTGCGCGGGAGTGTATGG
GGAAGGGGAAGAGGTGGAGCAGGAGCAGGAACAGGAACAGAAGCACGTAA
TGTTGCTGCAGCTGGTGGGGGGGGCGGGGCGCAGGGTGGGGGAAAGGGGA
TGGGGAGGAGCAGGAGGAGGAGATTCTTGGCTACTGCGAGACGGCCAATG
A
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Synonyms
Publications