rna7577, rna7577 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7577
Unique Name	rna7577
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3198
Alignment location	CM002472.1:287746..289781 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100316g3.2355.mrna
Orig protein id	gnl\|cribi\|Naga_100316g3.2355
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002472.1	supercontig	CM002472.1:287746..289781 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100316g3	gene7334	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23112.1	cds7557	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7577	rna7577-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002472.1:287746..289781-
coding sequence from alignment at CM002472.1:287746..289781-

mRNA sequence

>rna7577 ID=rna7577|Name=rna7577|organism=Nannochloropsis gaditana|type=mRNA|length=3198bp
CATTGACTTGGCAAAACAAAGAGCTACGCGCTTCTATCGTGGGTCATGGA
GGGCAAAGCCGTGGGAGTTGGCTGCGCGGCTTCCGTGCACTTAAAGCTGC
TTGCTGACGGTCTGCTTCCTATACGCATGCGGCGTCATTACCTTTGGCCC
GTCTCCACCTTCTACTCCGCTACAGTTGTCAATTACTCACCTTTCTCACC
CACATTCCCCCACAACGATTCAGACAAAGAGGAGCAGCCGCGCCCCTGGA
GTCTACATGAAAGCCTAGACTTGGTCAGACAACATCAGCGTCTCTTCACC
TCCCTCTTGCAGCTCCTGCCCCCGCGTCGCAAGGCCCTATTTTGTGGATC
AGACTTCTCCCTGGTGACAGATCACAGCACCTCACGCGGCACACACTGAA
AAAGAGATGCGACGTCAGGTTGGGCTGTCCACTGCCTTGTGCTGTTGCCT
GTTGGCCAGCGTAATAGATCAGAGCACAGGAGCAGGAGAAAGAACAAGGA
GGAGCTTTTCATCGGCAGCATTTGCGCCACCAATACGGCCGACTTCCTCC
CCTGTTCCTCCGCCCTCCCAGCCCTCCTCCGCCACTCCCTCCACCCCCCC
CTCGTCCCCCATCGTCTCTAGCGCAGGCGCTTCCACTTCAAGAAGAGGCG
AAAGAAGATCCTTCATGTCTTCTTCCACGCTGGCGTTGAGCCCTCCTGTC
TCCTCCACCACCACCAGCAGTACCAGTAGCAGCAGTAGCACCGTCAGTAG
CAGCGGCAGCAGCAGTCCTGTGTTGGAGCCTGAGCAGGCCATCGCCTTAT
CTGCCCAAGTGGACGGACCGATCTCATCCCAGCCTTCTCCGTCCTCCTCC
CTCTCCTCCCCCCCCGCCCCTTCCTCTCCCTCCACCGCTTCCTCCTCTTC
ACCCTCCGCCCCTCCCACCATGACTATGGATCCTTTCCGGCCTGCCCGTG
CCGCCGTCGATCCGGTCGTCATCAACATCCTTGTCACTATTCTCTCCTCC
TCTGCCGCCTCCTCCCCGCCCTCCACCCTCGCAGACGCGGAGAGAATCGC
CAACAAGGCCATCCGAAAGCGCATGCGCACGGATGCCCCGGAGACCGCTT
TGACTGCGGAGGAACGTCGCTTGATCTATGCCCGTGTTTACGGTGTGGAG
GTCTTGCGTGCCCGGCTTTCTTTCCTCTTGGAACACGCCGTGGCGCAATC
CAGTCTGGTGGGCCGACGTTTTGGGCCGACGTTGGCGGACTTCGGCCTTC
CCATGGACGCGTCCGGGGACCCGATGCTGGTGGTGAACCGGGCGGAGTGC
CTGTTGGCCTTGTACATGCTGACCGAGGAGGTGGACGGGGAGGGACGGCC
GCCGCGGGTGGACTTTTTGGACTCGGACCGGCTCGAGGTGTTGGGGGCGG
TGAGTCGGGAAGGGATGACGGAGGGGGAACGAGAAGCCCTGTTCGACCAG
GTGGACGACCCGTCGGAGAGATTGGCCGCGCGCCGCTCCCTCCCGTCCTG
GCTGGCAGCTCGTTTCCTGGAACAATTGGGCAAGGAGGGGGCGGAAGCCT
TGGCCCTGGCGTTGAACCGAAAACCCCCGACCACTTTGCGGGTGAACACA
CTCAAGACGAGCCGGGAGAAAGTAGTCCAGGAGCTCAAGAAGCGCGGCGT
ACCTGCCGCCGCCACCAAGTATTCCCCCTGGGGCGTGACGGTCGGGGACG
TGGAAGGGGGTTTCCGTGTCTTCGAGCAGGACATGTACAAGCTTGGCTAT
GTGGACCTGATCAACGAGGCGAGCCAGTGCGTGGCGCTGTCGACGGGGGC
GAAACCCTACGACATCGTCCTCCTGTACGGAGCCCGGAAGGGCGCAAAAG
CCCTGGCTTTGGGGAGCATGCTGCGGGGCAACGGGATGATCTACTTGTGG
GAGCCTTACTTGCGGCAACACTACCAACTTCGCGAGGCCATCCGCCGGGG
CCAGGCACAGGACTTGATGGAGGTGCTGCCCAACGTGATGGCGGCCATGC
GGATCAAGGCGGACGTGGTGCTGGTCGATGCCCTCTGCAGCAACACGGGG
GCCCTCTCCCACCATCCGTCCATGCGCTGGCTCAAGAATGAGACGCACAT
CTTGGAGACCTTAGTGCCCCAACAGCGTTCCGATCTGCAGAACGCTGCCC
GGGCCGTGAGTCCCGGGGGGGTCTTGCTCTACAGCACCTGCTCCCTCCTC
GCCTGCGAGAACCAGGAGGTGGTGGCCTGGTTTGAAAGCACATTCTCGGG
GGAGTTTGAGCCCTTGCCCTTCGACAAGACGGGGGGACCGGGCGGGAACT
GCCGGGCCCTGCTTCCCCACGTGCACGGGGTGGACGGCACCTTTATCGCC
CGATGGCGGCGGAAGCTCGGGTCTGCGGGGGTAGTCTCGGGATGAGACGG
AAACGTAGGAGAAAGCGTGGAGGGGAAGGGGGGGGGTGGTGGTGGTGTGG
TGAGGTGACAGGCCTTTGATGATATGGCAAGATGACAGGAGGAAATCAAG
GAGAGGAGGGGCGCGCCTGATCCATGGGCAGGGGAGGAGGCTGCCCGACC
TCGCAGGGGGGGGGCGTGAGAAGGAGCATCAAGTCGCAAATACCGAGGAG
TGCAGGCGTATGCTGGGTGAATCCGAGTGTATATGTCCCTGCGTGTTCAG
TGAATGCTGTTCGTGGGAGTGGGACTCGGGGGGGGGGAGGGGCAATGGGT
GGAGTCGGAGGAGGAGGAGGCAGATATTTTCGCGTGTGGAACTCGATCTC
TGTGGCATAAGTGAAAGGCGACATGCCCGCCAAAGCGGCTGCATAGGCCA
CATTTTCGGAATGATGAAGAGCGCCGGGAGGGGGAATAAGGAGGAAAGGA
GATGGTGAACGATAGGAAATAGGATAGAGTAGGAAAGGGACTGGGACGTC
CATAGAGGCGCCCTATATTTGAATCGTATAATCATTCTCTGCAAGAAGTG
TACGCATGGCGAGCAACACGAGATGATACCTCTCACTGGTACTTCTCATC
TCTCAAGAGGGGAAATGGCGTGTTTTAGCTTAGAAATCATCAATCCCTCA
CTTTTATTGAGGGAGCACAGCAACTCCCTCGGTCGTCCCGGCGATGGGTA
CAGAGGTATGACCATGAGCATTATAGAAGAAAAGGCGAAGATATAAAAGA
CACGCAAAAAAGGAACTAATGAAAATTTACAATATAGATGAGGTGAAC

protein sequence of rna7577

>rna7577-protein ID=rna7577-protein|Name=rna7577|organism=Nannochloropsis gaditana|type=polypeptide|length=500bp
MLEIYLSLVRNAASVVKSTLPSTHILRSPLCNLASTESLLHLQISMYPLI
DLIIAPLQLVAGVSGGIGGVFDLILALQQWRRTKAWSTGTQHMESRTYGR
ELRDMRARAEKEVEKARDRVTDACFRIIFGLFFYVFFLSTLQKADERMIQ
WTLFLMEVAALACLVRGAQSVLARRERALHLLSLNPADLLSALSQLENGS
TAFLPHELMDFAENRLVFTWDNPQPYHPYALLSDLEHLHSAYTRFHGVLS
RFKTGKDSDAEVDVREMLHRMQRQARALLSLCAMDALVLLFNAVAFLGYL
FFPLVWLFPDEAWYHRAFSGRLLIYPGHAFILDRGAFIGDVMWTLEPACL
LAASLIRRTVETRLMPPEPEFNTRTSDVNRYARPKVGEGAKWHEERTQGA
ECVRMRNSSRARKKKGEEKDLESELGSNKKGDLSKRRVLHERRKGERGSL
DSRDGETHGKVNGGGRTREPRVSAVKDPLSSVSTRTRARLSMHGQKGPEL

mRNA from alignment at CM002472.1:287746..289781-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7577 ID=rna7577|Name=rna7577|organism=Nannochloropsis gaditana|type=mRNA|length=2036bp|location=Sequence derived from alignment at CM002472.1:287746..289781- (Nannochloropsis gaditana)
TGCTTTCAGAAGCTCCCTGATGTCCAAACCCGCCATCTATCAGTACGTGT
CGGTGTATCGACGATGGCTTCTTGCTTAATTGGACTCTGCCCGCGCACAC
AAATGAACAGGCTGCATCTCTTGAAAGTGAAAGAAGGTCGCCGTTCCTTT
CTGTTGCTGCCTCACGGATTCTTGTGACAGTCTACCTGTCCACATATTAT
TTCCATGTTGGAAATTTACCTTTCCCTTGTCCGCAATGCTGCCTCGGTCG
TCAAAAGCACACTACCCTCTACGCACATCTTGCGGAGCCCTCTTTGCAAT
CTCGCCTCCACGGAATCCCTCCTGCATTTGCAAATATCGATGTATCCCCT
GATCGACCTGATAATCGCTCCTTTGCAGCTCGTAGCGGGAGTGTCCGGAG
GCATCGGGGGCGTGTTCGACCTGATACTCGCCTTGCAACAATGGCGACGC
ACGAAAGCATGGTCCACAGGGACACAACATATGGAATCTCGCACATATGG
TAGAGAACTGCGGGACATGCGGGCAAGGGCGGAGAAAGAGGTGGAGAAAG
CCCGGGATCGGGTGACGGATGCGTGTTTTCGTATCATTTTTGGCCTCTTT
TTCTACGTCTTCTTCCTTAGCACTTTGCAAAAAGCGGACGAGAGGATGAT
TCAGTGGACGTTATTCCTGATGGAAGTGGCAGCGTTGGCCTGCCTTGTGA
GGGGGGCGCAGAGCGTCCTGGCGCGTCGCGAACGAGCTTTACATCTTCTT
TCTCTCAATCCAGCGGACCTACTTTCCGCCTTGAGCCAATTGGAAAATGG
GTCAACGGCCTTTTTGCCTCATGAGCTGATGGACTTCGCCGAAAATCGCC
TCGTTTTCACGTGGGATAATCCGCAACCCTACCACCCTTACGCCCTACTC
TCGGACTTGGAGCATCTTCACTCCGCGTACACCCGTTTTCACGGTGTCCT
GTCGCGTTTCAAAACCGGGAAAGACTCGGATGCGGAGGTTGATGTCCGCG
AAATGCTCCATCGGATGCAGAGGCAGGCCCGGGCCCTCCTCTCCCTTTGC
GCCATGGACGCCCTCGTCCTCCTCTTCAACGCCGTCGCCTTCCTTGGATA
TCTATTCTTCCCCCTTGTCTGGCTCTTCCCGGACGAGGCTTGGTACCACA
GGGCTTTCTCGGGGCGACTGTTGATCTACCCTGGCCATGCCTTTATCTTG
GACCGAGGGGCCTTCATCGGAGACGTCATGTGGACCTTGGAGCCGGCCTG
TCTCCTTGCTGCCAGCCTGATCCGACGGACAGTGGAGACCCGTCTGATGC
CTCCGGAGCCCGAATTTAATACTCGCACGTCGGACGTAAATAGGTACGCG
AGACCGAAAGTGGGAGAAGGAGCAAAATGGCATGAGGAAAGGACGCAGGG
GGCCGAGTGCGTGAGAATGAGGAACAGTAGCCGAGCGAGAAAGAAAAAAG
GAGAAGAAAAGGATCTTGAAAGTGAGCTTGGGTCGAACAAGAAGGGAGAC
TTGAGTAAGCGAAGGGTCCTCCACGAAAGGAGGAAAGGAGAACGGGGGTC
GCTCGATAGTAGAGATGGGGAGACGCACGGGAAGGTGAATGGAGGCGGGA
GAACAAGAGAGCCGCGCGTCTCTGCAGTGAAAGACCCATTATCGTCTGTT
TCCACTCGAACGCGTGCGCGACTGAGTATGCACGGACAGAAAGGGCCAGA
GCTATAAGTTCCTCCGGCTCTTACCCATTCCACTCGTACGAGAAGTAAAC
GAGGGGACAGGGAGTAGCGCTAGCCGCGGAACGAGCGATCCCGAAAAGAA
ATTTTTGTGTATGGATGGACGATAATTGGTTAAAAAGACAAATCTGTGTG
CGGAAGAATTTGTGTGAGTTCCTGGTTTGAGGGCCAAGTGCCCGCTTGTG
AAGAAAGCTGTCAGTATCGATTCGGATGCCACTTCTTTTTTTCTTTTCCC
TTTAAAGAAGGGCAGCGCATGTATTATTGTAGTGTTGTAGCGGTGATAAA
TGTGATAAGATGGATGGGAAAGCATCAAAAAGTGCC

Coding sequence (CDS) from alignment at CM002472.1:287746..289781-

>rna7577 ID=rna7577|Name=rna7577|organism=Nannochloropsis gaditana|type=CDS|length=1503bp|location=Sequence derived from alignment at CM002472.1:287746..289781- (Nannochloropsis gaditana)
ATGTTGGAAATTTACCTTTCCCTTGTCCGCAATGCTGCCTCGGTCGTCAA
AAGCACACTACCCTCTACGCACATCTTGCGGAGCCCTCTTTGCAATCTCG
CCTCCACGGAATCCCTCCTGCATTTGCAAATATCGATGTATCCCCTGATC
GACCTGATAATCGCTCCTTTGCAGCTCGTAGCGGGAGTGTCCGGAGGCAT
CGGGGGCGTGTTCGACCTGATACTCGCCTTGCAACAATGGCGACGCACGA
AAGCATGGTCCACAGGGACACAACATATGGAATCTCGCACATATGGTAGA
GAACTGCGGGACATGCGGGCAAGGGCGGAGAAAGAGGTGGAGAAAGCCCG
GGATCGGGTGACGGATGCGTGTTTTCGTATCATTTTTGGCCTCTTTTTCT
ACGTCTTCTTCCTTAGCACTTTGCAAAAAGCGGACGAGAGGATGATTCAG
TGGACGTTATTCCTGATGGAAGTGGCAGCGTTGGCCTGCCTTGTGAGGGG
GGCGCAGAGCGTCCTGGCGCGTCGCGAACGAGCTTTACATCTTCTTTCTC
TCAATCCAGCGGACCTACTTTCCGCCTTGAGCCAATTGGAAAATGGGTCA
ACGGCCTTTTTGCCTCATGAGCTGATGGACTTCGCCGAAAATCGCCTCGT
TTTCACGTGGGATAATCCGCAACCCTACCACCCTTACGCCCTACTCTCGG
ACTTGGAGCATCTTCACTCCGCGTACACCCGTTTTCACGGTGTCCTGTCG
CGTTTCAAAACCGGGAAAGACTCGGATGCGGAGGTTGATGTCCGCGAAAT
GCTCCATCGGATGCAGAGGCAGGCCCGGGCCCTCCTCTCCCTTTGCGCCA
TGGACGCCCTCGTCCTCCTCTTCAACGCCGTCGCCTTCCTTGGATATCTA
TTCTTCCCCCTTGTCTGGCTCTTCCCGGACGAGGCTTGGTACCACAGGGC
TTTCTCGGGGCGACTGTTGATCTACCCTGGCCATGCCTTTATCTTGGACC
GAGGGGCCTTCATCGGAGACGTCATGTGGACCTTGGAGCCGGCCTGTCTC
CTTGCTGCCAGCCTGATCCGACGGACAGTGGAGACCCGTCTGATGCCTCC
GGAGCCCGAATTTAATACTCGCACGTCGGACGTAAATAGGTACGCGAGAC
CGAAAGTGGGAGAAGGAGCAAAATGGCATGAGGAAAGGACGCAGGGGGCC
GAGTGCGTGAGAATGAGGAACAGTAGCCGAGCGAGAAAGAAAAAAGGAGA
AGAAAAGGATCTTGAAAGTGAGCTTGGGTCGAACAAGAAGGGAGACTTGA
GTAAGCGAAGGGTCCTCCACGAAAGGAGGAAAGGAGAACGGGGGTCGCTC
GATAGTAGAGATGGGGAGACGCACGGGAAGGTGAATGGAGGCGGGAGAAC
AAGAGAGCCGCGCGTCTCTGCAGTGAAAGACCCATTATCGTCTGTTTCCA
CTCGAACGCGTGCGCGACTGAGTATGCACGGACAGAAAGGGCCAGAGCTA
TAA

Synonyms

Publications