rna7574, rna7574 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7574
Unique Name	rna7574
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1974
Alignment location	CM002472.1:279916..281232 -

Link to JBrowse

Properties


Property Name	Value
Product	Pre-mRNA 3'-end-processing endonuclease polyadenylation factor
Orig transcript id	gnl\|cribi\|Naga_101523g1.4779.mrna
Orig protein id	gnl\|cribi\|Naga_101523g1.4779
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002472.1	supercontig	CM002472.1:279916..281232 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101523g1	gene7331	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7574	rna7574-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23119.1	cds7554	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002472.1:279916..281232-
coding sequence from alignment at CM002472.1:279916..281232-

mRNA sequence

>rna7574 ID=rna7574|Name=rna7574|organism=Nannochloropsis gaditana|type=mRNA|length=1974bp
ATGGTAGAGGGAGGAAGGCACGCCATAGGACGCCAAGACCCCTGGATCAT
GAGCAAAAGCCAGGGTCCTGACAAGGTCATCGATTTCAAGGCATTTGGGG
ACAAGCCCGCGCGTGGACGAGCGACGGCGCTTTACATTGGGAACAAAAAT
GACGCCAGAAATGAGGCAGGGCTCCACGAACGAGGCATCACGCACATACT
CAACTGCACTCCGCCCCGCAGCCTTGACCCCGAGAGCGGGTGCCCCAATT
TCTTTGAGGCCTCCCACCGGGGCTGGGTGTACAAGCGTATCCCCATCTTC
GACAACCGGGGGGAAGACATCTTGTCCTTCATGCCCGGTGCCGTTGCCTT
CATCGAGCAAGGTACACTGCAACAAGGGCGTAAGCCGCTCCGCATCCTTC
GTCCTCGGTTACTTGATGCACGCGGGGGGGCTCTCATTGACCGATGCCCT
GGATCTCTTGCGTGCCAAGCGGAAAGCCTGCGCCCCCAACGAATCTTTTT
GGGAGCAACTGCGGCAATGGGAGGCACGGGTGGTGGAGAGACGAAGGGCG
AGGGGGGAGAAAGAGGCTCGCCAATCGCATCAAGACAGATATCAAACGCG
CGTAACCATAGCTGTGAACACTGCAAGTACTGTGGTATCGTGAGATATCA
ACTACGGCGGTACCAACAACACCCGAGGACGACCACCATGTTCCTGTTTG
GGGGTCATGAGGACGCAAGCAGTAAAGTAACGCAACCGTCTGCGCGGCAG
CATTTGGAACGGCCACCCCGACGCTCAGATCAAGACCCCGTGCACCAACA
GGAGGAGCAACAGGCGGAGCAACGGCAGCGTGCTGAGGATCGAGCAGCTG
AGGAAGAGAAGGAGACACACAATAGGGCTTTGCTACTTATGAGTGCAAAG
CAACGTGGCTTTTTATCCTACGAGGAGCACGAGTACCGGAAGCACCTCGC
CGAGCTAGACGCCGCGCTGACGGCCGCTGTGCCTCAAGCTGGACTGCCCT
GTCACACCCACGACTTGGCGTGGAAGAGCAGTGGGACCCCCGTCCGTTAT
TTTTTCAAACTGCCCGTTCCCGTGGACACGGCTGGCTCCCATGTCGCCTA
CCGCTTCGCGTCGGACGAGTTCGACATCGGGTTCGCCGTCTTCTTTCAGG
GCGCGGAAGAGGGGGCCAAGCTCGAGACGGTCTTGCCCTCCTCCCGGGTC
GACTCCCACGTGGAGCCCGTGTCGGGGGATATCACCGTGCACCGGCCCGG
GACTGTCGTCTTGCTCTGGGACAACTCGTACAGCTGGTTTGCGACCAAGG
CCCTGTCCTACAGCGTCCACTTGCGGTACCCCACGGGCCCGGCCGCGGAA
ATGGAGCGGGGAATGCGGGCCAGGCAAGTGGTGGCGGCGGCCTACCACGA
CATGGAGCTGGCGGCTGGGAAACACCGGGTCGTGCAGGCGGAGAAAGAGG
CCTTGACGGGGGAAGTGACGCGTCTGGAGGAGGAATTGGCTCGTCTCCAC
GCGCGGCTGTCGGAGAAGCGCCACGAACTGGCCACCTTGCACGAGGATGC
CCTCCTCCTCCAGGAGTGCCGGACCTCGCGGCACCAGCACCTCCTTCCCC
TCCTCCTCCGCGCCCTCCCGGCCCGCGTCCTCCTCCACTTGACCGGCTAC
TTCCGCCGTAGCGACCAGGTGCACGCCCTCAACAAAGTCTTCCTGCAGCT
CTTTATCCAATCCCGACCGGGCTACCTACGACCGCCCTCCCTCTCCGTCT
CCGCCTCCTCCTCCTCCTCCACCACCCCTTCGTCCTCCTCCTCCCCCCCG
TCCTCCATCCCTCCCCCCATTCCTCCCAAGTCCGCTGCTGTCATTCGCCA
AGAGGAAATGGACGAGGCTGCCCTCTCCTCGGACCGATCAGGGTCCCTCC
GTCCCCAGCCCAACTCCCTCCCCCCCCCCCATCCCCCCAAGAACGGGCAA
AAAGGCCCGGCAGGAAATCGCTGA

protein sequence of rna7574

>rna7574-protein ID=rna7574-protein|Name=rna7574|organism=Nannochloropsis gaditana|type=polypeptide|length=195bp
MRKVRAQVIVLVHGEQNQMNELKRALVRTIGSDNPAQAGYGANILTPDLC
SNIQLTIPRRKSARILGTLAEQPLQAGKPLSDAVLVSRNFTTRLLNPADL
PAYTQLRAGGVSEKVHFPFHQSLGTLRAFLEELFEGEIEELAGREAAFPA
LPSLHMNDGNKGAGGTGAGRKRALGKEEGEGEGAEGGAGALRING

mRNA from alignment at CM002472.1:279916..281232-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7574 ID=rna7574|Name=rna7574|organism=Nannochloropsis gaditana|type=mRNA|length=1317bp|location=Sequence derived from alignment at CM002472.1:279916..281232- (Nannochloropsis gaditana)
ATGCGGAAGGTGCGCGCACAGGTCATCGTCTTGGTGCACGGGGAGCAGAA
CCAGGTAGGGAGGGAGGGAGGGGTAGAGGGCGGGGACGGCTGGGGTTGCG
CAGGGAGGGGGTCCGAGTCCGACTGGAGGCAGTAGCGTCTTGGAGCATGG
AGGGCGTGGAGGGCCCAACCCCTCCGAGGCCCGGGGGGGTGCAGGACAAG
GCAGGGTCCAACCCCCGCTCTCTCCCTCCCTCTTTCGGTCCCTGCCGCCC
TTCCTCCCTCGCTCGGCCGCCCTGCAGATGAACGAGCTCAAACGCGCCTT
GGTCCGGACGATCGGCTCCGACAACCCGGCGCAGGCCGGCTACGGCGCCA
ACATTCTCACGCCCGACCTCTGCAGCAACATTCAACTCACGATCCCGCGA
CGGAAATCGGCGCGCATTCTGGGGACACTGGCTGAGCAGCCCCTCCAAGG
TGGGGGGGGGGGAAGTGGCAGATGTCTCCTAGGCTTGAGGCCTTTTCGCG
TTTTCTTTTAGAAGGGACCTCTTCGCTCACCCTCCTAGAAGGAAAGGGGG
GTCGCCGTGTCTTTCCCCCGTTTTTTGGGTCCGGCTCTTGTACGTCTTTT
CTGTCTCGGCGGGCACCGTGGGCCGCGAAAGGCGGACTACCCCCTTGTCA
TGGGGCCTCGAGCAGTGCCTGGCTGCATGCTGCCCCCCCCTTGCCCCCTC
GCACCTCCTCAGGCCCCTCTCACGAAGACCATGTCAAGACCATTACCATT
TTATTTTTCCTTGTCCTCCCTCCCTTCCTCCCTCCCTTCCTCCCCTCCCT
CCCTCGCTCTCTCCAACAGCGGGCAAGCCCCTGTCCGACGCCGTTCTGGT
TTCGCGCAATTTCACCACCCGCCTGCTCAACCCCGCCGACCTCCCCGCCT
ACACCCAGTTGCGGGCGGGGGGGGTGAGCGAGAAAGTCCACTTCCCTTTC
CACCAGTCCTTGGGAACCCTGAGGGCCTTCCTGGAGGAGCTCTTCGAGGG
CGAAATCGAGGAGCTGGCGGGGAGGGAGGCAGCCTTCCCCGCGCTTCCCT
CCCTGCACATGAACGATGGGAACAAAGGAGCAGGTGGCACGGGGGCGGGG
AGGAAACGGGCGCTGGGGAAGGAGGAAGGGGAGGGGGAGGGAGCAGAGGG
AGGGGCGGGTGCCTTGAGGATCAACGGGTGCGTGGTCTTCCATGTGGACC
CACGCGCAGGGCGAGGCGTGTTGGTGTGGGAGGGGGGCCCCGTGGCCGAC
ATGGTGGCGGACGCAGTGCTGGCGCTGGCCATGGAGGCCCAAGTAAGCCC
CACGGCCTTGCAGATGA

Coding sequence (CDS) from alignment at CM002472.1:279916..281232-

>rna7574 ID=rna7574|Name=rna7574|organism=Nannochloropsis gaditana|type=CDS|length=2352bp|location=Sequence derived from alignment at CM002472.1:279916..281232- (Nannochloropsis gaditana)
ATGACGGGCAAGCCCCTGTCCGACGCCGTTCTGGTTTCGCGCAATTTCAC
CACCCGCCTGCTCAACCCCGCCGACCTCCCCGCCTACACCCAGTTGCGGG
CGGGGGGGGTGAGCGAGAAAGTCCACTTCCCTTTCCACCAGTCCTTGGGA
ACCCTGAGGGCCTTCCTGGAGGAGCTCTTCGAGGGCGAAATCGAGGAGCT
GGCGGGGAGGGAGGCAGCCTTCCCCGCGCTTCCCTCCCTGCACATGAACG
ATGGGAACAAAGGAGCAGGTGGCACGGGGGCGGGGAGGAAACGGGCGCTG
GGGAAGGAGGAAGGGGAGGGGGAGGGAGCAGAGGGAGGGGCGGGTGCCTT
GAGGATCAACGGATGAACGAGCTCAAACGCGCCTTGGTCCGGACGATCGG
CTCCGACAACCCGGCGCAGGCCGGCTACGGCGCCAACATTCTCACGCCCG
ACCTCTGCAGCAACATTCAACTCACGATCCCGCGACGGAAATCGGCGCGC
ATTCTGGGGACACTGGCTGAGCAGCCCCTCCAAGATGCGGAAGGTGCGCG
CACAGGTCATCGTCTTGGTGCACGGGGAGCAGAACCAGATGACGGGCAAG
CCCCTGTCCGACGCCGTTCTGGTTTCGCGCAATTTCACCACCCGCCTGCT
CAACCCCGCCGACCTCCCCGCCTACACCCAGTTGCGGGCGGGGGGGGTGA
GCGAGAAAGTCCACTTCCCTTTCCACCAGTCCTTGGGAACCCTGAGGGCC
TTCCTGGAGGAGCTCTTCGAGGGCGAAATCGAGGAGCTGGCGGGGAGGGA
GGCAGCCTTCCCCGCGCTTCCCTCCCTGCACATGAACGATGGGAACAAAG
GAGCAGGTGGCACGGGGGCGGGGAGGAAACGGGCGCTGGGGAAGGAGGAA
GGGGAGGGGGAGGGAGCAGAGGGAGGGGCGGGTGCCTTGAGGATCAACGG
ATGAACGAGCTCAAACGCGCCTTGGTCCGGACGATCGGCTCCGACAACCC
GGCGCAGGCCGGCTACGGCGCCAACATTCTCACGCCCGACCTCTGCAGCA
ACATTCAACTCACGATCCCGCGACGGAAATCGGCGCGCATTCTGGGGACA
CTGGCTGAGCAGCCCCTCCAAGATGCGGAAGGTGCGCGCACAGGTCATCG
TCTTGGTGCACGGGGAGCAGAACCAGATGACGGGCAAGCCCCTGTCCGAC
GCCGTTCTGGTTTCGCGCAATTTCACCACCCGCCTGCTCAACCCCGCCGA
CCTCCCCGCCTACACCCAGTTGCGGGCGGGGGGGGTGAGCGAGAAAGTCC
ACTTCCCTTTCCACCAGTCCTTGGGAACCCTGAGGGCCTTCCTGGAGGAG
CTCTTCGAGGGCGAAATCGAGGAGCTGGCGGGGAGGGAGGCAGCCTTCCC
CGCGCTTCCCTCCCTGCACATGAACGATGGGAACAAAGGAGCAGGTGGCA
CGGGGGCGGGGAGGAAACGGGCGCTGGGGAAGGAGGAAGGGGAGGGGGAG
GGAGCAGAGGGAGGGGCGGGTGCCTTGAGGATCAACGGATGAACGAGCTC
AAACGCGCCTTGGTCCGGACGATCGGCTCCGACAACCCGGCGCAGGCCGG
CTACGGCGCCAACATTCTCACGCCCGACCTCTGCAGCAACATTCAACTCA
CGATCCCGCGACGGAAATCGGCGCGCATTCTGGGGACACTGGCTGAGCAG
CCCCTCCAAGATGCGGAAGGTGCGCGCACAGGTCATCGTCTTGGTGCACG
GGGAGCAGAACCAGATGACGGGCAAGCCCCTGTCCGACGCCGTTCTGGTT
TCGCGCAATTTCACCACCCGCCTGCTCAACCCCGCCGACCTCCCCGCCTA
CACCCAGTTGCGGGCGGGGGGGGTGAGCGAGAAAGTCCACTTCCCTTTCC
ACCAGTCCTTGGGAACCCTGAGGGCCTTCCTGGAGGAGCTCTTCGAGGGC
GAAATCGAGGAGCTGGCGGGGAGGGAGGCAGCCTTCCCCGCGCTTCCCTC
CCTGCACATGAACGATGGGAACAAAGGAGCAGGTGGCACGGGGGCGGGGA
GGAAACGGGCGCTGGGGAAGGAGGAAGGGGAGGGGGAGGGAGCAGAGGGA
GGGGCGGGTGCCTTGAGGATCAACGGATGAACGAGCTCAAACGCGCCTTG
GTCCGGACGATCGGCTCCGACAACCCGGCGCAGGCCGGCTACGGCGCCAA
CATTCTCACGCCCGACCTCTGCAGCAACATTCAACTCACGATCCCGCGAC
GGAAATCGGCGCGCATTCTGGGGACACTGGCTGAGCAGCCCCTCCAAGAT
GCGGAAGGTGCGCGCACAGGTCATCGTCTTGGTGCACGGGGAGCAGAACC
AG

Synonyms

Publications