rna7571, rna7571 (mRNA) Nannochloropsis gaditana

Overview
Namerna7571
Unique Namerna7571
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1074
Alignment locationCM002472.1:270443..270750 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_103686g1.105.mrna
Orig protein idgnl|cribi|Naga_103686g1.105
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:270443..270750 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_103686g1gene7328Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7571rna7571-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23122.1cds7551Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7571 ID=rna7571|Name=rna7571|organism=Nannochloropsis gaditana|type=mRNA|length=1074bp
ATGGCCAGTTCGCCTAAAAATCACAATGGTTTCCCTTTCCCAGCGCTACC
CTTGGAGCTAACGCGGGTCTTTTTGTGCTTTTTGGACCTGCCTACGCTCC
TCGCCCTAGCCTGCACCAGCACCGCCGCCCTCGGCCTCCTTGACCGAGAG
GAAGGCTTGTGGAGGCTGTGGGCCGACCGATGGACACCGCAATGCATGGA
CTTGGGCGATGGCAGCACTCAAATCCACGGCAGCGTCCACGAGTCCTCCA
TGCTGGCGGCAGCCGGACCCCCTTACCCTTGGTCCGCCCTCTTCCCTCCC
GGCCACGAAGCCCTCTGCCTCCATCGCCCGCCCTGTCGGAGGAGCCTGGC
CGCGTTCCACGCCGCCCGATCGAAGGTTCTAGAAAGCCACCTGGCACCCC
TCTGGGAAGGCGGGGAAGGGGCAGGTGGGAAGTTGCAGCCATGCCTGGTG
TCGCAGTACTTCCACGCCTACGACGTCCTCGTCACGCTGAGGGGGGAGGA
GGCCGTTGACGCCATCCTCCACGCCCATCGCCGTCGCCTGCAGGAGTTGG
TGCGCCACGCTTCCTCCGCCGCCTACTCCCACCCGCCCTCGCTCCTGAGC
CCGCTCTCCGTCCTCCTCGCCCTCCACCTCCTCTACCGCGCCACCCCTTC
TTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCACCTGGCGCGGCCGCCTCC
TCTCCTTCCTGGCCCAGGGTCCTTTCCAAGGCCTGGCCGTGGTGGCCTTC
TGGACGATGGGAAGTCACAACCCCCAGAACGGCTTCCGTGCCCGCGACGT
GCTCAAGTCCGAGAAACTGGACCTTCGGCGCATCGCCTGCCTGCTGAAGG
GGAAGGGGAGGGAGGGCGGGAGGGAAAAGGCCCAATCCGAGGAGGAGAGG
CACGGGGCCGCGGTGGAGCGGACGTTGGCCAAGCTCGAGTCCCTGCGGGG
AATGATGCCGACGGTGACTCTGAGCCCGGCCGTGGTGTATGTAGGGGGGG
TGGAGGCGGACAACAGCATGTGCGAGAACGCGGAGGGTTACTTTGCCCTG
AGCTCGAGCCCGCCCCGGCGATAA
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protein sequence of rna7571

>rna7571-protein ID=rna7571-protein|Name=rna7571|organism=Nannochloropsis gaditana|type=polypeptide|length=66bp
MCFIASGDFRNVGGIYIPDKLSMCQKSVYNGGCWEHLRTIRMRVCNACEC
RCLGEAWWPLISNKWF
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mRNA from alignment at CM002472.1:270443..270750+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7571 ID=rna7571|Name=rna7571|organism=Nannochloropsis gaditana|type=mRNA|length=308bp|location=Sequence derived from alignment at CM002472.1:270443..270750+ (Nannochloropsis gaditana)
ctcccccctccttctccttctctcttgctGCCCACTGACTCTCGGAAGCG
GGTGATAAGGATGGAAAGAATATTGAGGGGAAAATGTGTTTCATAGCGAG
TGGTGATTTTCGGAATGTAGGCGGAATATATATACCCGACAAGCTGTCTA
TGTGTCAGAAAAGTGTTTATAATGGGGGGTGCTGGGAACATTTGAGGACT
ATTCGCATGCGTGTGTGCAACGCGTGCGAGTGCCGATGCCTTGGGGAGGC
CTGGTGGCCCCTTATCTCAAATAAATGGTTTTAATTTGCCTGAAATGGAG
GGTGTGAG
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Coding sequence (CDS) from alignment at CM002472.1:270443..270750+

>rna7571 ID=rna7571|Name=rna7571|organism=Nannochloropsis gaditana|type=CDS|length=201bp|location=Sequence derived from alignment at CM002472.1:270443..270750+ (Nannochloropsis gaditana)
ATGTGTTTCATAGCGAGTGGTGATTTTCGGAATGTAGGCGGAATATATAT
ACCCGACAAGCTGTCTATGTGTCAGAAAAGTGTTTATAATGGGGGGTGCT
GGGAACATTTGAGGACTATTCGCATGCGTGTGTGCAACGCGTGCGAGTGC
CGATGCCTTGGGGAGGCCTGGTGGCCCCTTATCTCAAATAAATGGTTTTA
A
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Synonyms
Publications