rna7570, rna7570 (mRNA) Nannochloropsis gaditana

Overview
Namerna7570
Unique Namerna7570
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length990
Alignment locationCM002472.1:269189..270262 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100229g1.2601.mrna
Orig protein idgnl|cribi|Naga_100229g1.2601
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:269189..270262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100229g1gene7327Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7570rna7570-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23124.1cds7550Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7570 ID=rna7570|Name=rna7570|organism=Nannochloropsis gaditana|type=mRNA|length=990bp
ATGAAGTTCCTTGTTTATTTCAGTTTGCTGGAAAAAGGTGCGAGCTTAGT
TGGCCCGCTTGTCGAATTGCTCACACAGAAAAGCATGCAGCCTCGAAACG
CACCTCAAGGCACTACCTTCAAGACATTTTGTCTTTTATGGTTTTTGGCT
GGGTCCGGGGCATTTCACGTTCAACCAAATGCACGATTTTCAGTTGTCCG
AGATGACAGCGGCATTCTTGGCAGCAGCAGGAGGGGCACTCTGACGACCA
GGAAGGCTACTGAAAAATCAGATCATGGAGGAAGTAATCCCTTTTTTGCC
GCTCATCCCCCCTCCACAAAGTCCCGTCATGGGTTTCTGGGAGGACTCTT
CTCAGCCGGACTGCTGACCATCGGCACGTTTTCTCTTCAACCTGTATGGG
CCCGTCCGGAAGGCGTCAACAAACCAGAGCTTCTCCCCAAAGAGCGGAGC
AACGTCATTGACTTGGAGCGATTCCTAACCTCGGGTCAGAAGAAGCGTCT
AAGCCAGCAATTGGATGCGCTGGAGAAGGACTCCGGCATCAAGGTCCGCC
TCCTCTGCCAACGCTACCCCGACACGCCGGGGCTGGCCATCAAGGACTAC
TGGGGGCTGGACGATAAAAGCATCGTGGTGGTCGCTGATAAGGGGCCAGC
GAATATCAAGCAGGTGGCGACAAGAAACCTGCTCAATTTCAACGTGGGGA
GCGGTTTGCAGCTCTTGCTTCCTCCAGCGTTCTGGAACCGTCTCCGCTCT
CAGTTTGGCTCCATCTTCTACCTGCGTAGCCACGGCGACGACGAAGCCAT
CATCGCCACGATCAACACGATCGATACGTGCATTCGCCTCAAGGGCTGTG
TCGACGTCCCCAAAGGGGCGGCGGAAGAAGAGGGGGAGTGGAACCTGAAG
CGTGAAGCTCATCTTGGAGGAAACGATTGCAAACCAATAGAGATAACTAC
GATCGAGTACACGAGTAATGCAAAACAAGCTATGCTTTAA
back to top

protein sequence of rna7570

>rna7570-protein ID=rna7570-protein|Name=rna7570|organism=Nannochloropsis gaditana|type=polypeptide|length=357bp
MASSPKNHNGFPFPALPLELTRVFLCFLDLPTLLALACTSTAALGLLDRE
EGLWRLWADRWTPQCMDLGDGSTQIHGSVHESSMLAAAGPPYPWSALFPP
GHEALCLHRPPCRRSLAAFHAARSKVLESHLAPLWEGGEGAGGKLQPCLV
SQYFHAYDVLVTLRGEEAVDAILHAHRRRLQELVRHASSAAYSHPPSLLS
PLSVLLALHLLYRATPSSSSSSSSSSSTWRGRLLSFLAQGPFQGLAVVAF
WTMGSHNPQNGFRARDVLKSEKLDLRRIACLLKGKGREGGREKAQSEEER
HGAAVERTLAKLESLRGMMPTVTLSPAVVYVGGVEADNSMCENAEGYFAL
SSSPPRR
back to top

mRNA from alignment at CM002472.1:269189..270262+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7570 ID=rna7570|Name=rna7570|organism=Nannochloropsis gaditana|type=mRNA|length=1074bp|location=Sequence derived from alignment at CM002472.1:269189..270262+ (Nannochloropsis gaditana)
ATGGCCAGTTCGCCTAAAAATCACAATGgtttccctttcccagcGCTACC
CTTGGAGCTAACGCGGGTCTTTTTGTGCTTTTTGGACCTGCCTACGCTCC
TCGCCCTAGCCTGCACCAGCACCGCCGCCCTCGGCCTCCTTGACCGAGAG
GAAGGCTTGTGGAGGCTGTGGGCCGACCGATGGACACCGCAATGCATGGA
CTTGGGCGATGGCAGCACTCAAATCCACGGCAGCGTCCACGAGTCCTCCA
TGCTGGCGGCAGCCGGACCCCCTTACCCTTGgtccgccctcttccctccc
ggccacgaagccctctgcctccatcgcccgccCTGTCGGAGGAGCCTGGC
CGCGTTCCACGCCGCCCGATCGAAGGTTCTAGAAAGCCACCTGGCACCCC
tctgggaaggcggggaaggggcaggtgGGAAGTTGCAGCCATGCCTGGTG
TCGCAGTACTTCCACGCCTACGACGTCCTCGTCACgctgaggggggagga
ggccgttgACGccatcctccacgcccatcgCCGTCGCCTGCAGGAGTTGG
TGCGccacgcttcctccgccgcctactcccacccgccctcgctcctgagc
ccgctctccgtcctcctcgccctccacctcctctaccgcgccaccccttc
ttcctcctcctcctcctcctcctcctcctccacctggcgcggccgcctcc
tctccttcctggcccagGGTCCTTTCCAAGGCCTGGCCGTGGTGGCCTTC
TGGACGATGGGAAGTCACAACCCCCAGAACGGCTTCCGTGCCCGCGACGT
GCTCAAGTCCGAGAAACTGGACCTTCGGCGCATCGCCTGCCTgctgaagg
ggaaggggagggagggcgggagggaaaaggcccaatccgaggaggagagg
cacgGGGCCGCGGTGGAGCGGACGTTGGCCAAGCTCGAGTCCCTGCGGGG
AATGATGCCGACGGTGACTCTGAGCCCGGCCGTGGTGTATGtaggggggg
tggaggcggacaaCAGCATGTGCGAGAACGCGGAGGGTTACTTTGCCCTG
AGCTCGAGCCCGCCCCGGCGATAA
back to top

Coding sequence (CDS) from alignment at CM002472.1:269189..270262+

>rna7570 ID=rna7570|Name=rna7570|organism=Nannochloropsis gaditana|type=CDS|length=1074bp|location=Sequence derived from alignment at CM002472.1:269189..270262+ (Nannochloropsis gaditana)
ATGGCCAGTTCGCCTAAAAATCACAATGgtttccctttcccagcGCTACC
CTTGGAGCTAACGCGGGTCTTTTTGTGCTTTTTGGACCTGCCTACGCTCC
TCGCCCTAGCCTGCACCAGCACCGCCGCCCTCGGCCTCCTTGACCGAGAG
GAAGGCTTGTGGAGGCTGTGGGCCGACCGATGGACACCGCAATGCATGGA
CTTGGGCGATGGCAGCACTCAAATCCACGGCAGCGTCCACGAGTCCTCCA
TGCTGGCGGCAGCCGGACCCCCTTACCCTTGgtccgccctcttccctccc
ggccacgaagccctctgcctccatcgcccgccCTGTCGGAGGAGCCTGGC
CGCGTTCCACGCCGCCCGATCGAAGGTTCTAGAAAGCCACCTGGCACCCC
tctgggaaggcggggaaggggcaggtgGGAAGTTGCAGCCATGCCTGGTG
TCGCAGTACTTCCACGCCTACGACGTCCTCGTCACgctgaggggggagga
ggccgttgACGccatcctccacgcccatcgCCGTCGCCTGCAGGAGTTGG
TGCGccacgcttcctccgccgcctactcccacccgccctcgctcctgagc
ccgctctccgtcctcctcgccctccacctcctctaccgcgccaccccttc
ttcctcctcctcctcctcctcctcctcctccacctggcgcggccgcctcc
tctccttcctggcccagGGTCCTTTCCAAGGCCTGGCCGTGGTGGCCTTC
TGGACGATGGGAAGTCACAACCCCCAGAACGGCTTCCGTGCCCGCGACGT
GCTCAAGTCCGAGAAACTGGACCTTCGGCGCATCGCCTGCCTgctgaagg
ggaaggggagggagggcgggagggaaaaggcccaatccgaggaggagagg
cacgGGGCCGCGGTGGAGCGGACGTTGGCCAAGCTCGAGTCCCTGCGGGG
AATGATGCCGACGGTGACTCTGAGCCCGGCCGTGGTGTATGtaggggggg
tggaggcggacaaCAGCATGTGCGAGAACGCGGAGGGTTACTTTGCCCTG
AGCTCGAGCCCGCCCCGGCGATAA
back to top
Synonyms
Publications