rna7559, rna7559 (mRNA) Nannochloropsis gaditana

Overview
Namerna7559
Unique Namerna7559
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length702
Alignment locationCM002472.1:246176..246572 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100229g10.2600.mrna
Orig protein idgnl|cribi|Naga_100229g10.2600
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:246176..246572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100229g10gene7317Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7559rna7559-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23123.1cds7541Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7559 ID=rna7559|Name=rna7559|organism=Nannochloropsis gaditana|type=mRNA|length=702bp
GGATGCTCTGTACAGCTGCTGTCCAGGGACCTCCCTCATAATTTTGGTAC
CATGAAGAAGAGCAGCAAACACAGAGACTCGACTGGCCCTGCCGGCGTAA
ACTCTCCATCCACCGCTTCCCTCCTGAACGTCGCCACATCTACGTTGCCG
TATTCAGTTGTTGAGCTCTGCGGGCGACACGTGGGGCGTTGCGGTTATTG
TCAGTCGAAAGGTCGCAAAGGGCAAAAGTACACCAGCGTGTCCTTCGGCT
TGAGCGCCCAGCGCCTTTTGTGCGAAGACTATCAAGCCCTGATCGACTTG
GGATGGCGGAGATCGGGTACGTATCTCTACCGACCGGTGAACGAGGAAAC
TTGCTGTCCCTGCTACACCATCCGGTTGCGCGTGGACGACTTCAAACCTT
CCAGATCCCAGCGAAAAGTCGCCGCCCACCTCCATCGTTTGATGGCACTG
GGGACGGAGAGAGAAGACCTGGAGGATAAAAACAGCACCTCCAGCGCCAG
GCATAGCAGCATAAGTACTGTGAGTAGTAGCGGCAGTATCCACAGCCGAG
GCAGCCAGCAGAGTGGCGGCAGCAGGGGAAGGAAACACCTCAAATACAAG
GCCAGGGAACGTCGAAGTCTCGCTCTTGCCCTCCGCGTCGGGCTCCTCTC
GACGCGAACACAACGGCACCAGCGCCCCCGTGGCCGTACCGCAGCCCAGT
GA
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protein sequence of rna7559

>rna7559-protein ID=rna7559-protein|Name=rna7559|organism=Nannochloropsis gaditana|type=polypeptide|length=114bp
GGGEKRFRAGVGGGGGGFGGGGDGRGTSSGSPQAGAGDAQAHPEGIRAPR
DARPGPTAHDPAPTLGCGSRPLQSIERVGGPRPFRAGPRRTRTEEGRRRG
RGESGKGSAGGGRD
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mRNA from alignment at CM002472.1:246176..246572+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7559 ID=rna7559|Name=rna7559|organism=Nannochloropsis gaditana|type=mRNA|length=397bp|location=Sequence derived from alignment at CM002472.1:246176..246572+ (Nannochloropsis gaditana)
ggaggaggagaaaagcggTTCCGGGCCGGTgtcggcggtggaggaggcgg
ctttggaggaggtggtgatggacGTGGGACCTCTAGCGGCTCTCCccagg
cgggggcgggagatgcTCAGGCCCATCCTGAGGGAATTCGTGCGCCACGT
GACGCCCGCCCTGGTCCCACGGCTCATGATCCGGCTCCGACACTAGGGTG
TGGATCCCGCCCTCTCCAGTCCatcgagagggtgggagggcctCGGCCGT
TCCGGGCTGGCCCCCGCAGGActaggacggaggagggcagacggcggggg
cgaggggagagcggaaagggaagtgccgggggagggagggattgaggGGC
CGGGGTGTGGGCGAATGCAGAGGAGTGGGGACGGCAGaagggccggg
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Coding sequence (CDS) from alignment at CM002472.1:246176..246572+

>rna7559 ID=rna7559|Name=rna7559|organism=Nannochloropsis gaditana|type=CDS|length=345bp|location=Sequence derived from alignment at CM002472.1:246176..246572+ (Nannochloropsis gaditana)
ggaggaggagaaaagcggTTCCGGGCCGGTgtcggcggtggaggaggcgg
ctttggaggaggtggtgatggacGTGGGACCTCTAGCGGCTCTCCccagg
cgggggcgggagatgcTCAGGCCCATCCTGAGGGAATTCGTGCGCCACGT
GACGCCCGCCCTGGTCCCACGGCTCATGATCCGGCTCCGACACTAGGGTG
TGGATCCCGCCCTCTCCAGTCCatcgagagggtgggagggcctCGGCCGT
TCCGGGCTGGCCCCCGCAGGActaggacggaggagggcagacggcggggg
cgaggggagagcggaaagggaagtgccgggggagggagggattga
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Synonyms
Publications