rna7554, rna7554 (mRNA) Nannochloropsis gaditana

Overview
Namerna7554
Unique Namerna7554
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3576
Alignment locationCM002472.1:230827..231567 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100043g44.7256.mrna
Orig protein idgnl|cribi|Naga_100043g44.7256
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:230827..231567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100043g44gene7312Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7554rna7554-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23173.1cds7536Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7554 ID=rna7554|Name=rna7554|organism=Nannochloropsis gaditana|type=mRNA|length=3576bp
ATGATGGAACCCGAGAAAACCGAAAGCTGCGGTTCTCTGCAAAGCGTTTC
ACCTAGCACGGTGCTCATTGACTCTGCCCGACCCTCATCCACCTCAAGAG
GAACCCGACCCGCCGATCCGCCGATTGAGGGGCCTCCGGCAACTACCCCT
CGAGGAAAGGGGAAAACATCGTCAAAATCACGACGAAACATTGATGTGGA
GCGGGGTCGCTTGCGTTCTCGGTCCAATTCTAGATCTCCTCCTCCGCCAC
CTAGCAGCAATGGGAGCGACAGAAGCGACAGGAGTCTACGCAGTGTGAGG
AGCGACAGGAGTCAACGCAGTGAGAGGAGTGAAAGGAGCGCTCGGGGCGA
GAGAAGGGATAGGAAATATCGAGCTGACCGCAGGGAACGAAGCAGTCGAG
GCGACAGGGGGGACAAGAAAGGTGGACGGGATAGGAAAGGGCAGGATGAT
TTGTATTACGGCGACTCGCATCGGACAGCGTCGATGCGAAGTTCGGGTAG
CGAGCGAAGCGCCAAAAGCACCAACAGCATCGTCAGTGCTAGCAGTTCGC
GACCTCTTCAAGACAGCAACACCCTTCGCAGTCATCATCAAGACAACCTC
GGCCGAACAGAAAGGCATCGAAGCAGGAGTTCAAGCCATACCCGGCGCAC
CGGCAGCATGGGGCAAGAGGAGTGGGCTGCACGTGTCAGCATGGACACCG
TACCCCCTCGCCGCAGCTTGGTACGGAGCTGGCTACAGACAGCTTGGGCC
TCTCGTCAGTGTCGGCGAGGATTCGGTCTTTTCGTGGCCGGCTTGCTTCT
GATGGCGCTGGCTGGCGTCGTGGACATTGAGGGAAACGCGTACAGGCATG
CCAAGATCCGAGAGGCTATAGTAGTAGACGCACCGAACCATCCAGAATTC
AAGGCATGGGCGACAGGGGCCCAGCAAAAAACACCCCTCTTCTATACGTA
CCACCTGTACAACATCACGAATCCGGAGGAGTTCCTGGCGGGGCAACCTC
CCCAAGTGCACGAGGTCGGCCCCTTCAGCTTTCAGCAAAGGACCAAGAAA
ATCAACGTAACCTTTTCGGACGAGGGCCGTCTGGTCTCATACATCACGCA
GATACAGCACGAATTCACAGGGGACCCAGAAGAGTTAGACCGGCAGTCCG
TCTATTCGCTCAACTTACCGTACTCGGTCGCGATCTACACGGCAGGAAGC
GAGAGCAACTTGCTGAAAATCGGTTCTCAACAGGGTTTGGCAGAAGTCTT
GTTCCAAATGAAAACATATTTTCTTCCCGCTCTGAAGGAAAACGCTGTGG
TCATGGCTATACAGATGGCTGTGGACGCCATGACCCAAATCCTCAATGCC
ATGCAAGCGCCGTCCGAGGCGACAGCCACCAGATGGGGCGGGGGCTGTAC
AAGCAACATGTTTGGGAAGATTTGCGGCTTCTCTACGGTTGCAACTTTTT
TCTCGGCTGTCGATAAGCGCAACAAGATGGACTTGAATCTGCTGCAGCTT
TGCATCAACACCAAGCTGACAGAGGCCGAGCAGATACCCCTGGCGACGGT
CCGCCGGCTATGGGACCCAACCGACGTGTATTCCATCATGAATGTGGACA
GAGGGAGCGCCGCAGAGCGGTACGGTATATCGTACTGGTTGTGGGGCGAC
GTGGACGTGCGGGACACTATCGCCATGCATTTTGGGATCACCATCCGACA
ATACAACGCGTTGCGGGCGTACTTGCTGGATATATATCGAAGCCCCATGC
TCGAAATGGCTGTGGTCAAGATATTCTTGGAGAGTCTACCTCCAGAAGAT
GCGGGTACGGCTGAGGTGGCACAGTGGAGTGATTTCTTGTGGCGGCAATG
GGCAGTGGGAGACGTGGTTACACGCCTTAAGAACGAGTCAATGGCAAGGC
CGGAGAGCATGCAGCCGGAGCTTCCCCCCGAATTCGCCTGGTACGCGGAG
AAGGCAGGGTACAAGACTTTTACCTATGGCGGCAAACGGCTTAACCGGAC
CCAGGCCAAGTGCACGTTCGACCTGGCTAAACGGCCCATGGTCTACTTCC
AGACCTATGTCTTGGGCCTCCCAGGTCCAAGCATCAGCCGTCCCACGTTT
GTAGATTTTGGATTGGAGGACTCGGGCGAGCCCCTTATTGATCCCCGGGA
TTGCTTCCAATCAAAGAACGACTGGGCCCTCTTGCAGGGCTATTTAGCCT
ACCTGGCTGAGTACTTCGTCGCCCCCCTGCTGCAGGAGGACGTGCTGGAT
AAGAACGGGGGGCTAGTTACGCGCAAGACTTTGCGAGAATGCCTGTACGG
GTACTCCGCGCCCATTTTACAGCTAAGTCTGGCTAAGGATGACCCCCGGG
CCATGAAATTCAGCCTGCTCGCCAACGATCCCAGCCTGGACGGCCCGGGC
CGCTGTCTCTCCTCCAACGACGTGGAAAACCCGTTCACGGCTTGCCGCTT
TTCCTCGCGAAACATCACTCAGAATATGGACGGGAGCGAGCAAGTGGCTC
GCATCTTCGACAAAGTGCCCAACACGTATCACACGGGTCGGGACGATACC
GTGCGCGCGGGAGCCTTCTACACGTACCGTGGCGACCGAAGCATTGCTGA
CATTTGGCCTGGCGGCTCTATTCCCTTTGCTGGAGGAACGAAAGATTTGC
CCGGATCCATTCAGTATGGTTACTCCGATGGTATGCAGTTTCCTCCCTTT
GGCGCCATCGACGGACCAAACGTGGTGCTCTCAGTCTTCGTACCAGGCTT
TGTCCTGCCCCTGCGGTTCGCGTTTTCGGAGGACGTAGACGTGCAAGGCG
TCAAATTGAAGCGCTTTCGCCTAGTGCCCGAAACTTTTAGCAGCTCTCGA
AGCGACGCCAAGACCTTTGGGATGGACAAGGTGCAACAAGAAGGCCTTTT
CAACCTGACGGGCCTCATGACCGGCCTGACGTACTTCAGTAAGCCCCACT
ATCGCCCGACTCCGCCCTTCGATATGTCCGACGTTGGGGGTCTGGCAGGG
TTTGACCCCGCTCGAGATGATAGCTACATTGACGTGGAGCCTGTGACTGG
GAAGACGATGAACGCGAACATACAACTACAGCTCAATGCAGGGATCACGC
CGGAGGCCTTTGACAAGTTCCACAACAGCGTTTATCCTGTCAAGGCCTTG
CCGGTTCTGCACGTTGCACAGCATGCCGGGATCGTCCCCGAAGACGCAAA
GTTCTTCAAAAATATGGTCTATGGAACGGAGAAGCTAATCAAATTGACCA
CCATAATATCGGCCAGTGTGGGAGCCTTGCTCCTTCTGATAGGGCTGGCC
CTGCTTTTGCACCATGCTCTGCGGCACGGTGCTGCGGTAGCAGCAGCAGA
GCTGGGACTTGAAAACAACTCATTAAAGGGAGTGAGTTCGAAGGAAGCGA
CCGCTGTGGAAGAGGGAGATGTCGAGATGGCGATTACCAAGCGCGTTCGT
GCGTCGTCTTCATATCTGTCGACTGGCACCCCGCCCGATGCAGCTGGCAT
GACAACATTGTCAGCAACGTCAGCGAAAAATTTGACGCCTCCTCGTAAAC
CCCCCTCAAAGCGTGGGGAATTTTAG
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protein sequence of rna7554

>rna7554-protein ID=rna7554-protein|Name=rna7554|organism=Nannochloropsis gaditana|type=polypeptide|length=246bp
MQLQATMNSPAAAPKPDVLPSVQPVGGVPMSYPPPEEEFALQHEQNTEIG
KDRSIKPSTPSTPSNRTGKSATDVGKPVEKHATKNRHQQLLDKINRLEAA
LLQAQNQNATNERLATQHAQRALFAEKDVLQMKRETLTRTSELKGQGVHR
QRLEKETKRLQAALKQDKSTRETKMRQCQIALDQTERRARHLEKENAQLR
AALQKQGELLQVLDRQVEHAQAMQLFSIMEEDFDNLVVDLRRSGRE
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mRNA from alignment at CM002472.1:230827..231567+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7554 ID=rna7554|Name=rna7554|organism=Nannochloropsis gaditana|type=mRNA|length=741bp|location=Sequence derived from alignment at CM002472.1:230827..231567+ (Nannochloropsis gaditana)
ATGCAGCTACAAGCTACAATGAATTCGCCGGCTGCAGCGCCCAAACCTGA
TGTGCTGCCCTCGGTTCAACCTGTGGGGGGCGTTCCCATGTCCTATCCCC
CCCCTGAAGAAGAATTTGCATTACAACACGAGCAAAATACAGAGATAGGT
AAGGACCGTTCGATAAAGCCCAGCACGCCCAGCACGCCATCAAACAGAAC
AGGAAAAAGTGCCACTGATGTCGGAAAACCAGTTGAAAAGCATGCTACGA
AGAATCGGCATCAGCAGCTTCTTGACAAGATAAACAGACTGGAGGCGGCC
TTACTCCAGGCCCAAAATCAAAACGCGACAAACGAACGATTAGCAACGCA
ACATGCACAAAGGGCTTTGTTTGCGGAAAAGGATGTGTTGCAAATGAAGC
GGGAGACGCTGACACGGACCTCTGAGTTGAAAGGACAAGGTGTGCACAGA
CAGCGCCTTGAGAAAGAAACTAAACGATTACAAGCCGCACTTAAACAAGA
CAAATCTACCCGAGAAACGAAGATGAGGCAATGTCAAATTGCCTTGGACC
AAACGGAGCGAAGGGCTAGGCATCTGGAAAAGGAGAACGCTCAGTTGCGA
GCAGCTCTTCAAAAACAGGGGGAGTTGTTGCAAGTACTCGATCGACAGGT
GGAGCACGCGCAGGCCATGCAGCTCTTTTCTATCATGGAGGAAGATTTCG
ACAATTTGGTCGTTGATCTGCGTCGCTCGGGACGGGAATGA
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Coding sequence (CDS) from alignment at CM002472.1:230827..231567+

>rna7554 ID=rna7554|Name=rna7554|organism=Nannochloropsis gaditana|type=CDS|length=741bp|location=Sequence derived from alignment at CM002472.1:230827..231567+ (Nannochloropsis gaditana)
ATGCAGCTACAAGCTACAATGAATTCGCCGGCTGCAGCGCCCAAACCTGA
TGTGCTGCCCTCGGTTCAACCTGTGGGGGGCGTTCCCATGTCCTATCCCC
CCCCTGAAGAAGAATTTGCATTACAACACGAGCAAAATACAGAGATAGGT
AAGGACCGTTCGATAAAGCCCAGCACGCCCAGCACGCCATCAAACAGAAC
AGGAAAAAGTGCCACTGATGTCGGAAAACCAGTTGAAAAGCATGCTACGA
AGAATCGGCATCAGCAGCTTCTTGACAAGATAAACAGACTGGAGGCGGCC
TTACTCCAGGCCCAAAATCAAAACGCGACAAACGAACGATTAGCAACGCA
ACATGCACAAAGGGCTTTGTTTGCGGAAAAGGATGTGTTGCAAATGAAGC
GGGAGACGCTGACACGGACCTCTGAGTTGAAAGGACAAGGTGTGCACAGA
CAGCGCCTTGAGAAAGAAACTAAACGATTACAAGCCGCACTTAAACAAGA
CAAATCTACCCGAGAAACGAAGATGAGGCAATGTCAAATTGCCTTGGACC
AAACGGAGCGAAGGGCTAGGCATCTGGAAAAGGAGAACGCTCAGTTGCGA
GCAGCTCTTCAAAAACAGGGGGAGTTGTTGCAAGTACTCGATCGACAGGT
GGAGCACGCGCAGGCCATGCAGCTCTTTTCTATCATGGAGGAAGATTTCG
ACAATTTGGTCGTTGATCTGCGTCGCTCGGGACGGGAATGA
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Synonyms
Publications