rna7546, rna7546 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7546
Unique Name	rna7546
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2469
Alignment location	CM002472.1:204762..207349 +

Link to JBrowse

Properties


Property Name	Value
Product	ethylene-inducible protein
Orig transcript id	gnl\|cribi\|Naga_100043g37.7235.mrna
Orig protein id	gnl\|cribi\|Naga_100043g37.7235
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002472.1	supercontig	CM002472.1:204762..207349 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100043g37	gene7305	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7546	rna7546-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23152.1	cds7528	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002472.1:204762..207349+
coding sequence from alignment at CM002472.1:204762..207349+

mRNA sequence

>rna7546 ID=rna7546|Name=rna7546|organism=Nannochloropsis gaditana|type=mRNA|length=2469bp
CATTATTCCCACTTTTATTCTGCAAACTCCGTGTGTGTGTGTCGGTCGAC
GACGCATTTCTCTTCGTAGGGATTCCCTCTCTGATCAAGTTTTCTTAGCT
TACCAGATGGACACTGGCAGGCATAGACGCACCGATATGTAGCCAAAATA
CACGAGCTATAGAAATAGTAACTTTTTATTAGGACACAAAACCCTTTCTA
GTCGGCAAACAGTCCTTTTCACAAAATATTTTCTACCTCCGTGAAGGACT
CCTGATAGTGAATGTGAGAGCATTCTTGGTCATCTTATAGCTTTATCTCA
CACTCGGAATGCAGGAAAGCTAGTGCGAAGCATGGGAATTGAGCAATTCG
AGATCTTGAAGAGCCTTGGGGAGGGTGCTTTCGCCAGCGTCCACAAGGTG
ACACGATTGGTTGATGGTAAAACGTATGCATTGAAAAAGGTCGACGTGAG
CTCTTTAGATGACAAGGAACTTCTTTCTGCATTGAATGAGATCCGCCTTC
TTGCATCCTTCGGACATCCTCGTATTGTGCGGCTTCACGAGACCTTCATG
GATGGAAATAACTTGTGCATTGTCATGGAGTATTGTGGGTGGGGTGACCT
GGCGATGAAGATCAAGCGATATGTGAAACGCAGGGAGTACATCGATGAGC
GCGTCATCTGGGTCTACATGATCCAGATCTTGGAGGGCCTGAAAGCTCTC
CACGAGCGCAACGTCCTCCACCGTGACCTAAAACCCGCCAACTGCTTCCT
GGCGGAGGACGGCTCTATCAAGATAGGGGACATGAACGTTTCCAAAGTCA
TGAAGGACGGCAACGCCAAGACACAGATCGGGACGCCTTACTATATGAGC
CCCGAAATCTGGGCCCGCCGCCCTTACAACCATGCCACTGACATTTGGTC
TCTTGGCTGCCTTATTTATGAGCTGTGTGCTCTGCGTCCTCCCTTTCTTG
GCAACAATATGAGTGAACTTAAAACGGCCGTGCTGGGAGGCAATTTCAAC
CCCGTCCCCTCTGTTTACTCGAAGGATTTGGGGTCTGTCATTGCGCGAAT
GCTTCTAGCTGCTGCCAGGGATCGTCCTTCCGCTGCCGAGGCTTTAGCCT
ATCCGGAGGTTAACGCACGCAAATGTCTGGTTAAGAATGTTCTGCGCGAG
GAGGAGCTGTACACGAAGGGAGGAAAGGGCGGATACGGAGCTGAGGACGC
GCTGATGCCTACAATTCACATAGGTTCCCTACGTGAGCTCGGTATTAAGC
TTCCAGGGCCTTCCTACCCCTCCGATGGCCCTCCCACTCCCACAACACCC
ATCATGTTGGCCCATGATGCCTCTCCTGTCAACGAGAAGGCGACGCTCGC
CAGTCCCATCCACCATCGCCAAAAACATGAACAGGAATTTCCCGCGTCCG
GAAGCCCTTCCCATCACCGTCGAGCTGGCCTTCCCGGCGCGAAAAGTGAA
AGTCACTCCCCCTTGTCTCCTTCTATACCTCCAATAGATAAGGGGCGACA
GCAATCTCCTGGTGTGGGAAGTCTTGACAGAGACTTGAGCGGCGCAAAAG
AGCGCGGTTCGGCTTCTTACCCGCAGGATCGTCGTCGGGTCCCGACGCCC
CCTCCCAATGGCGCTCCCGCCAAGCCACTCCCCATTGGCAGGATTCCAAG
TCATGGAAAAGGTAGCAGCGCGGCCAGCAGCAGTCTGCCAGTCTTGAAAA
TCAAGACAAGTAGTAGCGGCAGCGGCCACGTTACCCCAGTCGGAGGCGTC
GGCGACGAATACTCTATGTTGCCGAGAACGGAGCAGAAAAATAGCGTCAA
AAATGTGCTACAGGCGGTGCAGAAAGAGATCTCGCGGCCTCCATACTGAG
CGTGAAAGAAGCATAGTAATGTCAATACTCGTGAAAATGTCTTGAAAACA
TTGCAACTTTTCATGTAAAGCAATTCATAGAGTAAAGCTTTCGAAGCAGG
AAAATGTATTGCATGTTTGCATTAACTGGGGACTTACAAATACGAACGGG
AAAGCGTCGAGGGCATAGAGCTGAGGGTGACAGATCGTGAAAGCGTTACC
GTCCGTACACTTTGTCACGTCCTCGAGCAATATGCCCTTGGGGAACGAAG
TGTACTAGTCGCAAGAAAAGTGAATGCGGAGGAACATGTCTTTGCGTGGT
TGCTTAGATGCATGAGGTTCCTAGAGGGAAAAGATGAAGAAAAGAAGCCT
TTCTAAATGCTCAACGCAGAAGTACGCCGAGCATACCGCGGTCTGCGGTG
AAACTGAAAAAACGTGTATTAATTTCACGAGGTCGTAAAGGGCAGCGACA
TACAAAAGAGGTGAGCAAAACGTTGGTGCTACTGAAATGTGGGTGTAGCA
ACGTTTCATCTTTTTAGTCATGACTGAAATGTCGTTGAAATGGGAAATTT
GGTGAGACGCATGGGAAACTAAAAATTACGAATGGCAATAACGGTAATGA
TACACCATCCAGCCTTGGT

protein sequence of rna7546

>rna7546-protein ID=rna7546-protein|Name=rna7546|organism=Nannochloropsis gaditana|type=polypeptide|length=284bp
MALERIPADIRRDGGVARMSDPAMIKEIKAAVTIPVMAKARIGHFVEAQI
LETIEVDYIDESEVLTMADEDNHINKNKFKVPFVCGCRDLGEALRRVAEG
AAMLRTKGEAGTGNVVEAVRHARTVQREIRRLKTMDEDELFVYAKDIRAP
LELVQEVARSGKLPVVNFAAGGVATPADAALMMQLGLDGVFVGSGIFKST
EPEKRARAIVQAVTHFRNPQVLAEVSTKLGVPMVGISDIKGDPVNFRDRE
GGVAGDGVPPKKQLHGATETQLYGSSWNVGNQHR

mRNA from alignment at CM002472.1:204762..207349+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7546 ID=rna7546|Name=rna7546|organism=Nannochloropsis gaditana|type=mRNA|length=2588bp|location=Sequence derived from alignment at CM002472.1:204762..207349+ (Nannochloropsis gaditana)
CTGACTGGGCGGGGCCGTGTGAGTGGGAGTGCAGCTTTGCGGGCGTGACT
GTGGTCTTTTTTGTTCCCTGTGCTCCAAACGCATGCGATAAGAAGCACAT
TATGCTATTGTGGACATGTGACGCTTTTTGAGGCTTCGTCATTTGCGGCT
gaagcctcctcttctgctgCTTGGGATGAGTCAGGCAAGATACTGGGCCG
GTCAGGACCTGACCTCGCCTTTCCATTCCAAAAAGCATGCGAGCTCTCTA
CGTGTGTGAAGGATTGTGGATTTGAGCAGGCAGTGACACGCTCGGTGTAT
AAGTGTGTCAAGCGTGGCTCTTTTGTCATGCACGCACGGGAGGCACCATT
CGTTGTCCTGACGAAGTGCTGCTTCACAGGCTAATGCATGCAGAGATTGT
GGGCCGCCCGTCGCCCGTGTTATTTTATAGTGCACGCCTCATTTTTTTGG
ACTTTTTGATCAGGATCATCAGAATATGTCATAATACAACAATTCACAAC
ACATAAAAAGCCGGCATCTCAGACACCAGTCGTCATGAACGGGCACGCCA
ATGGCAACGGCAGCACCCACGGGGgaccttcgtcctcctcgacctcgacg
GGGGCTGTGGGTACATTTCGCGTGAAAGCTGGCCTGGCGCAAATGCTCAA
GGGCGGCGTCATTATGGGTATGTGACAGGGTGGGGCACGAGGTGGTGAAA
TGCGTGTCATTGAAATGGGGCAACTGGTTGGGTGATGTGGCCTCTACTGC
AAGTGCGTGTCTCTGCGTAAGGCTGACTTGATTCGTTTTACGAGCCTGTC
ATTGCTTGGCGGGAAGTCTATTTTGTGGATGGCTTCATGCAGTGAAGGGT
AGCAGAAGTTTGCAGGCGTTGCTTTACAAAGTagtcttcctcctgagcCC
GGGCGAGGAACAAAgcacccatccctcccgtcACCGTCACTGCTTCTCTT
GCCTTCAGTCCTGACATTGTTGTACTCATTTTTGGAACTTAGACGTGGTG
GATGTGGAGCAGGCAAAGATTGCAGAGGCTGCTGGTGCAGTGGCAGTGAT
GGCGCTTGAGCGCATCCCTGCCGATATCCGTCGTGACGGGGGCGTGGCGC
GTATGAGCGACCCGGCCATGATCAAGGAGATCAAGGCGGCGGTGACCATC
CCAGTGATGGCTAAGGTGAGCCAGAGATtgcgaggagaaggctgcAAGGA
AGGTAGAAGTGACCGGCACATCTGGCTGTAGAAGTGAACGAGAAGTAATC
AAGGCAAGAGGGCCGTGAGGAAAGATTGATGAACCATAAGCAGATAGGGA
CATCAGAGCGCAATCTTTTCGTGCACATGCTGATTTCATCTACTCTTACG
ACTGAGCCTGAGAAATGCATGACGTCTCAGGCCTCATGACAGTAAGGGCC
ATGACTAACCGCTCGGTCGCTCCGTGTCTTTCCTCCTAGGCCCGCATCGG
ACATTTTGTAGAGGCCCAAATTCTGGAGACGATCGAGGTAGATTACATCG
ATGAGTCCGAGGTTCTGACcatggcggacgaggacaaTCACATCAACAAG
AACAAGTTCAAAGTACCCTTCGTATGCGGGTGCCGGGATTTGGGGGAGGC
CCTCCGGCGTGTGGCCGAGGGGGCGGCGATGCTCCGCACCAAGGGAGAAG
CGGGAACGGGGaatgtggtggaggcggtgcggcACGCGCGCACCGTGCAA
CGGGAGATCCGGCGCTTGAAGACAATGGATGAGGACGAACTGTTTGTGTA
CGCCAAGGACATCAGGGCACCGCTGGAGCTCGTGCAAGAGGTGGCACGCA
GTGGGAAGCTTCCAGTCGTGAATTTCGCGGCCGGTGGGGTAGCCACGCCG
GCAGATGCAGCGTTGATGATGCAGTTGGGTCTGGACGGTGTGTTTGTGGG
ATCAGGGATCTTTAAATCGACCGAGCCGGAGAAGCGCGCCCGGGCCATTG
TTCAGGCGGTGACGCATTTCCGAAACCCGCAGGTGTTGGCAGAGGTTAGC
ACGAAATTGGGTGTACCCATGGTGGGCATATCGGACATCAAGGGGGACCC
TGTGAACTTCCGGGACCGCGAGGGGGGTGTTGCGGGTGACGGCGTTCCCC
CCAAGAAGCAGCTACACGGTGCCACGGAGACCCAGCTGTACGGATCGAGC
TGGAATGTGGGGAATCAGCACCGTtagaaagggaggacggggagagtTAC
CAGCGGTATGAGGTCGCGACTATTGCGTTCGAGGGAGCCTTGTCTGTTGA
AACGTCCGAAGGTGTTATGACGAGAGAATGAATTAGCGCAAGGTAGCGGG
TGGCATAGCGGAGAGAGATCTTGCAGTTCCAGCATCATGTCAGAGCACCA
CGGACAAGGACGCGCACGGCTGTATCTTCCATGCCGCACCGCTTTCCCAT
ATATGTCAAGGAACTGGATGGTTAGTTGAGCAAAGTAGGGAACGTTAAAA
ATTTTAACAATGTCACCATAATCCAAGGCTGAAGTATGTAGGTAGAAAGT
CTGGAATGGCCCGTGCATTCTTGTGTCCATGTCTCTGCTTAAGTATGATG
ACAGACGCAAAGAAGATGACCAAGGGGGCCTGCCTGCC

Coding sequence (CDS) from alignment at CM002472.1:204762..207349+

>rna7546 ID=rna7546|Name=rna7546|organism=Nannochloropsis gaditana|type=CDS|length=1710bp|location=Sequence derived from alignment at CM002472.1:204762..207349+ (Nannochloropsis gaditana)
ATGGCGCTTGAGCGCATCCCTGCCGATATCCGTCGTGACGGGGGCGTGGC
GCGTATGAGCGACCCGGCCATGATCAAGGAGATCAAGGCGGCGGTGACCA
TCCCAGTGATGGCTAAGGCCCGCATCGGACATTTTGTAGAGGCCCAAATT
CTGGAGACGATCGAGGTAGATTACATCGATGAGTCCGAGGTTCTGACcat
ggcggacgaggacaaTCACATCAACAAGAACAAGTTCAAAGTACCCTTCG
TATGCGGGTGCCGGGATTTGGGGGAGGCCCTCCGGCGTGTGGCCGAGGGG
GCGGCGATGCTCCGCACCAAGGGAGAAGCGGGAACGGGGaatgtggtgga
ggcggtgcggcACGCGCGCACCGTGCAACGGGAGATCCGGCGCTTGAAGA
CAATGGATGAGGACGAACTGTTTGTGTACGCCAAGGACATCAGGGCACCG
CTGGAGCTCGTGCAAGAGGTGGCACGCAGTGGGAAGCTTCCAGTCGTGAA
TTTCGCGGCCGGTGGGGTAGCCACGCCGGCAGATGCAGCGTTGATGATGC
AGTTGGGTCTGGACGGTGTGTTTGTGGGATCAGGGATCTTTAAATCGACC
GAGCCGGAGAAGCGCGCCCGGGCCATTGTTCAGGCGGTGACGCATTTCCG
AAACCCGCAGGTGTTGGCAGAGGTTAGCACGAAATTGGGTGTACCCATGG
TGGGCATATCGGACATCAAGGGGGACCCTGTGAACTTCCGGGACCGCGAG
GGGGGTGTTGCGGGTGACGGCGTTCCCCCCAAGAAGCAGCTACACGGTGC
CACGGAGACCCAGCTGTACGGATCGAGCTGGAATGTGGGGAATCAGCACC
GTtagATGGCGCTTGAGCGCATCCCTGCCGATATCCGTCGTGACGGGGGC
GTGGCGCGTATGAGCGACCCGGCCATGATCAAGGAGATCAAGGCGGCGGT
GACCATCCCAGTGATGGCTAAGGCCCGCATCGGACATTTTGTAGAGGCCC
AAATTCTGGAGACGATCGAGGTAGATTACATCGATGAGTCCGAGGTTCTG
ACcatggcggacgaggacaaTCACATCAACAAGAACAAGTTCAAAGTACC
CTTCGTATGCGGGTGCCGGGATTTGGGGGAGGCCCTCCGGCGTGTGGCCG
AGGGGGCGGCGATGCTCCGCACCAAGGGAGAAGCGGGAACGGGGaatgtg
gtggaggcggtgcggcACGCGCGCACCGTGCAACGGGAGATCCGGCGCTT
GAAGACAATGGATGAGGACGAACTGTTTGTGTACGCCAAGGACATCAGGG
CACCGCTGGAGCTCGTGCAAGAGGTGGCACGCAGTGGGAAGCTTCCAGTC
GTGAATTTCGCGGCCGGTGGGGTAGCCACGCCGGCAGATGCAGCGTTGAT
GATGCAGTTGGGTCTGGACGGTGTGTTTGTGGGATCAGGGATCTTTAAAT
CGACCGAGCCGGAGAAGCGCGCCCGGGCCATTGTTCAGGCGGTGACGCAT
TTCCGAAACCCGCAGGTGTTGGCAGAGGTTAGCACGAAATTGGGTGTACC
CATGGTGGGCATATCGGACATCAAGGGGGACCCTGTGAACTTCCGGGACC
GCGAGGGGGGTGTTGCGGGTGACGGCGTTCCCCCCAAGAAGCAGCTACAC
GGTGCCACGGAGACCCAGCTGTACGGATCGAGCTGGAATGTGGGGAATCA
GCACCGTtag

Synonyms

Publications