rna7544, rna7544 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7544
Unique Name	rna7544
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2064
Alignment location	CM002472.1:199660..202036 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100043g33.7241.mrna
Orig protein id	gnl\|cribi\|Naga_100043g33.7241
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002472.1	supercontig	CM002472.1:199660..202036 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100043g33	gene7303	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7544	rna7544-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23158.1	cds7526	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002472.1:199660..202036+
coding sequence from alignment at CM002472.1:199660..202036+

mRNA sequence

>rna7544 ID=rna7544|Name=rna7544|organism=Nannochloropsis gaditana|type=mRNA|length=2064bp
CGAACTTCAAGGCTTTGGGTCCTGCCGCCCTCGACGACGAGTTTTACCAC
CGATCGACATTTTCCCACGATAGATTACGGTAGCTGCAAGGGCCTTGCGG
AAAACATGGCGCTGCTGCATCGGATGAACGTCAAGTCGAGTCGCAAGGCT
TTCCTGTGTCCACGATTATCTCCCCGACTCATTGATCAAGGCACGTCCCT
GAAAAGGCAAGCCCGCCTGTCTTATCTGGCTCCTACGTCGTCCTCCTCGC
AAGGGAAAGGTCCTTTGCAGGCTTATAACGACATGGTCGGAGAGCAACGC
ATAGAATGGAACGGAAAGCAATTGCAGGTGGTGGCCCAATTGCAGCAAGT
CTTCGATCAAGTCCTGGACTTTTCTTCCCGGCCTGAAGCATATCGGCGCG
TGACGTATAAATTCGTTGATTTTGCGATTAAAAAAGAAGAGGTAGTGACG
CCGCCGAAAGGCTTGTATCTGTATGGAGGTGTGGGGACGGGTAAAACTTT
CTTGATGGATTTGTTCTACGCCCAAGCCCCCTCGAGCTGGAAGAAACGCC
GAGTGCACTTCAATCAGTTCATGCTCGAGGTCCACGAACGCCTCCACAGA
CTCCGTAAAGAGGGTCACAGGGGGGATCCTTTGGCGACAGTCGCCGAGGA
TCTTTATCAACAAGCGTGGCTCCACTGCTTCGACGAGTTTCAGGTCACTG
ATATAGCGGACGCCATGGTGTTGAAACGCCTTTTTTCGGGGCTTTTGCAG
AGAGGCTCTGTAATGATCAGCACATCGAACCGACCTCCCGAAGATCTCTA
CCTAAACGGACTCCAGCGAGACTTGTTCCTACCTTTCATCGAGCTCCTCA
AGGAGAGGAACCGAGTGCATTATATCGACTCCCCCACCGACTATCGGCTG
GTGCATCGGGCTTACGGCCTCGCCACCGACACGCTATTCGTCCACAGCCG
GAGGCTGACAGGGTTGATGAATGGCGAGGCAGCGCCAGCCTTGGCAGTAC
CGAATGCAGGCGAGGAGATGGAGGAGGACGGGGCGCGGTTCGGCTTCAAG
GAGGCGCTAAAGAGCGCCACGAAGGGGCAAGCCATGACCCCCGTGGGGAT
CCCGCTCCCTCAACAGGGCCGGAGGGTCCACGTTCCTCGTGTGGGGCTGA
GCACGCGCACGGCCCTCTTCACGTTTCAGGAGCTGTGCGAGCAGCCCCTG
GGCGCCGCGGACTACATCGCCTTGTCGCAGTCCCTCCCCACGCTCTTCTT
GGCCGACGTCCCCGTTATGACGCTCGTAGATGTGAACAAGCTCCGCCGCT
TCATCACGCTCGTCGACTGCCTCTACGAGGCCCGCACCCAGCTGGTACTC
CTGACGGACGCGCCCGTCTCCGAGCTTTTCGACGCGGCCGCCTACAGCGA
GAGCGCCCAGGACGAGGTCTTCGCCTTCGGTCGCACCGTCTCCCGGCTCA
TGGAGATGCAGGGGGCGGACTACCGGGAGCACCACCAGACGGCCCTTTCC
AAGAACGACGGGGCCACGCTGCTGGGCAGGGCCTTGGGAGGAAGGGACGG
AGGGTGGCCTGGGCCGGGGCCTGAGGAGCTCTTTGGCTTCTACAACCTGG
ACGGGAGGAACCGGTGGGACTCGGCGGCCAAGGTGCGCGCCTTTCTGGAG
GACCTGGCCGAGGTGACGCTGCAGCGGCGGGACGTGGTCTCGGACGCGTT
GGTCGCACGGATGATGGGCTCGCGCGTGACCGTCTCGGCGCGGGGGATGG
AGGAGTTCATGACGGAGGGCGACGGACGGGCCAAGCTGGAGGCAGCGCTG
AGAGAGGGATGCCACGGCCAGGCGGATGGGTCGTGAGAGGGCTCTCAAGA
CGTTGCCTATGTGGGCGGAGGCGCGATCGTCCATGTATGCCTGTGCGCCA
GCGCCTGGTGGATAGAAACTCGGAAACAGGCCCGGGGTCGACCCGCGGGC
GCAGGCGAGGGCTAGGTCAAGCATACGGTGTGGCGTCGAGCAATTTGAAA
ACCTGTACCATTAAAATTAAAAGAAATTTGGGAAGTTGCGACTGCGCGAC
ACAGGAAACCATAT

protein sequence of rna7544

>rna7544-protein ID=rna7544-protein|Name=rna7544|organism=Nannochloropsis gaditana|type=polypeptide|length=531bp
MIRAHITRESGGQATYLAKHRLAKLPSSHLRDSSSEGGLDRCLYDNAAYI
QYLETQLKRVTAASEQAENFRESTQALNDLVEKMSDRVTALDREFEERYS
SRQDALCNQLTSLEVKLEQQDQSYRRELQRQEERQRHDSKAEVPAAIQDR
IKTMEETVRELQMRLDAVECQRGTEINGLEARLEAVEKANAELSARCRGL
EAAQVEGLAGVRSELSGDMERLRHDVSMGDHRILSSCSKQGELAQEEMGR
LREELVRLQREVVRREGHLPPREGSSSASRDYTAARDSSGLKMGDAGEGS
AAMEQGKKLRVLTAAFHHAEEAHRRRYQEQRAMLDKMQKFLTAVGVKALE
TASSQAEAVLSVVGQLEERVACMEAEQEQQRAWRRPRRGGAAREKADRPT
IAPGTAKAACFHESSEEPADTWEAEGVRSARRGAQGLEEDERVMEEELVQ
ATAAVLAVGSIMGTQGCEGHEKRGGSGLVLPESEECQRGRVVRARSARGG
GPAGGRVQDTQGDGPGLCRPHSHGQSRHVQH

mRNA from alignment at CM002472.1:199660..202036+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7544 ID=rna7544|Name=rna7544|organism=Nannochloropsis gaditana|type=mRNA|length=2377bp|location=Sequence derived from alignment at CM002472.1:199660..202036+ (Nannochloropsis gaditana)
AGCAGTTTTTTCAAATATCTAACGACGTAGTCACACAACCACGCAGGTAG
CGATGATACGGGCACATATTACCCGTGAAAGCGGAGGGCAGGCGACCTAC
CTGGCCAAGCACCGCCTGGCCAAGCTTCCTTCATCTCACCTCCGCGACAG
CAGCAGTGAGGGGGGGCTGGATCGTTGCCTGTATGACAATGCGGCCTACA
TTCAGTACCTGGAGACTCAGTTGAAGCGAGTGACAGCCGCCAGTGAGCAG
GCAGAGAACTTTCGTGAGAGCACACAAGCTCTGAACGACCTCGTTGAGAA
AATGTCGGACCGCGTCACGGCCTTGGATCGCGAATTTGAGGAGCGTTACA
GCAGCCGTCAAGATGCCCTTTGCAACCAATTGACATCTTTGGAGGTAAAA
TTAGAGCAGCAAGATCAGAGTTACAGGCGTGAACTgcagcgacaggagga
gcgGCAAAGGCATGATAGTAAGGCGGAGGTTCCCGCCGCGATCCAGGACC
GGATAAAAACAATGGAAGAAACCGTGAGAGAATTGCAAATGCGACTTGAC
GCTGTGGAATGCCAGCGTGGAACTGAAATAAATGGACTCGAAGCCCGGCT
GGAGGCGGTCGAGAAGGCCAACGCGGAGCTCTCAGCGCGGTGCCGTGGTC
TGGAGGCTGCACAGGTCGAGGGCTTGGCCGGCGTGCGGAGCGAGCTAAGC
GGGGACATGGAGAGGCTCCGGCACGACGTGTCCATGGGCGATCATCGGAT
CCTGAGCTCCTGCAGCAAGCAGGGTGAGTTGGCACAGGAAGAGATGGGCC
GCCTGCGGGAAGAACTCGTGCGCCTCCAGCGAGAGGTCGTGCGGCGAGAG
GGccacctgcccccccggGAAGGATCCAGCTCGGCGTCACGCGACTACAC
GGCGGCGAGAGATAGTAGCGGGCTGAAGATGGgcgacgcgggggagggct
cggCAGCAatggagcaggggaagaagttGAGGGTGTTGACGGCCGCCTTT
CATCACGCCGAGGAGGCGCACCGACGGAGGTACCAGGAGCAGCGCGCCAT
GCTGGATAAAATGCAGAAATTTTTGACTGCGGTGGGGGTTAAGGCGCTTG
AGACAGCAAGCAGTCAGGCAGAGGCCGTACTCAGCGTGGTAgggcagctg
gaggagagggtcgcCTGCATGGAGGctgagcaggagcagcagagagcctg
gcggcggccgaggaggggcggcgcCGCACGGGAAAAGGCGGACCGCCCGA
CGATAGCCCCGGGCACGGCCAAGGCTGCCTGTTTCCATGAGTCCAGCGAA
GAACCGGCCGATACGTGGGAGGCAGAAGGCGTGAGAAGTGCCAGGCGGGG
GGCGCAGgggctggaagaggatgaaagggtcatggaagaggagctcgTCC
AGGCCACAGCTGCAGTCTTGGCTGTAGGCTCCATCATGGGCACGCAGGGT
TGTGAAGGACATGaaaagcgggggggaagtgggCTTGTATTGCCGGAGTC
GGAGGAATGCCAGAGGGGTCGCGTCGTCAGGGCGCGCtcggcgagggggg
gcgggcccgcCGGTGGCCGTGTTCAGGATACCCAGGGCGATGGACCCGGC
CTTTGCCGCCCGCACTCCCACGGCCAAAGTCGCCATGTACAACACTAAAC
TTTGGCCCTGATTAGAAAAAAGGGCACAGGGAGCGCGAGGGAGATCCGTG
GCGCACCCTCATGATTCCCGATGATTTATGAGGGCAGACGGCAAAAGAAT
TCGATCAATAGATGCCAGCGCCCAGCATGTGCCACGCTCGCTTTCTCGGT
GTAATCTACCCGCGCAGTAGCGTTGGTATTATCCTTTATACTGAGAGTAG
GCATCAAATCGATCCGCTTCACCCTCGGTACGCAAAACTGAGTGTTAACC
CAAAAGATGGGCAGTACATGATCTTCTTCGTCGGATaagaggaatgagga
gggcaggcgtTTGGACAAAGAAGCGTAAGCGATCATAATTGTTTAGAGAA
AATCATTTTTATTGACAGCAAGTCTGTTCTGTCGTGATGCTTTTCGCATG
AGCACACCAAACATGCTGAAATATGCGCAAGCTGCACGACCAACTGGCAG
AAGACTGGGCATGTATTGATCGACGTAACGAAGCAATCTGTGTCTGCGAC
ACGGTGTCAGAAGGCTAAAGCCCAACCAAGGCTGGATGGTGTATCATTAC
CGTTATTGCCATTCGTAATTTTTAGTTTCCCATGCGTCTCACCAAATTTC
CCATTTCAACGACATTTCAGTCATGACTAAAAAGATGAAACGTTGCTACA
CCCACATTTCAGTAGCACCAACGTTTTGCTCACCTCTTTTGTATGTCGCT
GCCCTTTACGACCTCGTGAAATTAATA

Coding sequence (CDS) from alignment at CM002472.1:199660..202036+

>rna7544 ID=rna7544|Name=rna7544|organism=Nannochloropsis gaditana|type=CDS|length=1596bp|location=Sequence derived from alignment at CM002472.1:199660..202036+ (Nannochloropsis gaditana)
ATGATACGGGCACATATTACCCGTGAAAGCGGAGGGCAGGCGACCTACCT
GGCCAAGCACCGCCTGGCCAAGCTTCCTTCATCTCACCTCCGCGACAGCA
GCAGTGAGGGGGGGCTGGATCGTTGCCTGTATGACAATGCGGCCTACATT
CAGTACCTGGAGACTCAGTTGAAGCGAGTGACAGCCGCCAGTGAGCAGGC
AGAGAACTTTCGTGAGAGCACACAAGCTCTGAACGACCTCGTTGAGAAAA
TGTCGGACCGCGTCACGGCCTTGGATCGCGAATTTGAGGAGCGTTACAGC
AGCCGTCAAGATGCCCTTTGCAACCAATTGACATCTTTGGAGGTAAAATT
AGAGCAGCAAGATCAGAGTTACAGGCGTGAACTgcagcgacaggaggagc
gGCAAAGGCATGATAGTAAGGCGGAGGTTCCCGCCGCGATCCAGGACCGG
ATAAAAACAATGGAAGAAACCGTGAGAGAATTGCAAATGCGACTTGACGC
TGTGGAATGCCAGCGTGGAACTGAAATAAATGGACTCGAAGCCCGGCTGG
AGGCGGTCGAGAAGGCCAACGCGGAGCTCTCAGCGCGGTGCCGTGGTCTG
GAGGCTGCACAGGTCGAGGGCTTGGCCGGCGTGCGGAGCGAGCTAAGCGG
GGACATGGAGAGGCTCCGGCACGACGTGTCCATGGGCGATCATCGGATCC
TGAGCTCCTGCAGCAAGCAGGGTGAGTTGGCACAGGAAGAGATGGGCCGC
CTGCGGGAAGAACTCGTGCGCCTCCAGCGAGAGGTCGTGCGGCGAGAGGG
ccacctgcccccccggGAAGGATCCAGCTCGGCGTCACGCGACTACACGG
CGGCGAGAGATAGTAGCGGGCTGAAGATGGgcgacgcgggggagggctcg
gCAGCAatggagcaggggaagaagttGAGGGTGTTGACGGCCGCCTTTCA
TCACGCCGAGGAGGCGCACCGACGGAGGTACCAGGAGCAGCGCGCCATGC
TGGATAAAATGCAGAAATTTTTGACTGCGGTGGGGGTTAAGGCGCTTGAG
ACAGCAAGCAGTCAGGCAGAGGCCGTACTCAGCGTGGTAgggcagctgga
ggagagggtcgcCTGCATGGAGGctgagcaggagcagcagagagcctggc
ggcggccgaggaggggcggcgcCGCACGGGAAAAGGCGGACCGCCCGACG
ATAGCCCCGGGCACGGCCAAGGCTGCCTGTTTCCATGAGTCCAGCGAAGA
ACCGGCCGATACGTGGGAGGCAGAAGGCGTGAGAAGTGCCAGGCGGGGGG
CGCAGgggctggaagaggatgaaagggtcatggaagaggagctcgTCCAG
GCCACAGCTGCAGTCTTGGCTGTAGGCTCCATCATGGGCACGCAGGGTTG
TGAAGGACATGaaaagcgggggggaagtgggCTTGTATTGCCGGAGTCGG
AGGAATGCCAGAGGGGTCGCGTCGTCAGGGCGCGCtcggcgagggggggc
gggcccgcCGGTGGCCGTGTTCAGGATACCCAGGGCGATGGACCCGGCCT
TTGCCGCCCGCACTCCCACGGCCAAAGTCGCCATGTACAACACTAA

Synonyms

Publications