rna7542, rna7542 (mRNA) Nannochloropsis gaditana

Overview
Namerna7542
Unique Namerna7542
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length987
Alignment locationCM002472.1:197388..197597 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100043g31.7236.mrna
Orig protein idgnl|cribi|Naga_100043g31.7236
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:197388..197597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100043g31gene7301Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7542rna7542-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23153.1cds7524Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7542 ID=rna7542|Name=rna7542|organism=Nannochloropsis gaditana|type=mRNA|length=987bp
ATGAGGAGAAATGATTGCATGTGGCTAGTGCCCATAATTGTTATGACCAA
CACTACCTTATGCTCTGCTTTCTTGCTTCCACGACCGTCATGCAAGGTTT
TACGAACTCAGGTATGGAGCACTGTGACGGATAGGTCACCGTCCTCTGTG
ACCTCCTCGAGCGCTAGCGGGACCTTAGCCCCTGTCCTACCGGGTATGGC
GGAAGATGAACTCGATGATCCCAACGAATACTACGAGCCTGAGCCCGTGG
ACCCCACTGTAGACGAGCTCAAGGCACTGGGTGCGGAGGAGCTGGCGACG
GTGCTTCCCGGCTCTGATGGGAAAACGATAGGGCAGTGGCTGGAGGAGGA
CAGACCTGTCTTCAGCGACGGCTCATTGGTGGGAGAGTGGGTCAAGGAGG
CACATCGCCTGCGGTTACTGCCTTTTATGGAACGAGCAGAATTTCTCAAG
GCTAAGTCGTTCGACGATTTAAACGTCTTTCGGGCCCGGCAGGTAGCATG
GCGGGAAATGCTGGAGGCAAAGGGAGTGCTGGAGCCGTACCAGGGCATGC
CTGAGACGGGGGTCACGGAGCTGTCCCCCGAGGCGCACGCAGCGAAGCAA
GCGCGAGCCCAGGAGCAGTACACAGCTGATATGATCAACCACGAGGAGGC
CTTGCTTGAGAGCGTGGACGTGCTGTGCCGGAACGCGCGCTTTGAGGGTC
TGGCCGCGGACAACAAAGTGCGGGTGGTGATGAATGGGCGCATGGAGCCG
CAGGAGGTGGAGGTGCTGGAAGGAGCGCCCCTCGGGGATGCCAGGCTTCT
GGCATTAGCAGTGGAAGCGGCGATGGACGCGGCCTACAAGCAGAGCGCCG
AATTTTACGAGGAAACCATAACGACGGAGTATCTGGCCCAGGCTGAAACG
CCGACGGACGTGGAGGGGATTGTTGAGGCGCTGGCACGCAAGGAGTTTGT
GATTGATGAGCACGTGGTCGATCCAACCATGCTTTGA
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protein sequence of rna7542

>rna7542-protein ID=rna7542-protein|Name=rna7542|organism=Nannochloropsis gaditana|type=polypeptide|length=69bp
MTIFDERGDGGERYIQAKMLQSKTKIARCFHENYSRYGFLCRAVATSQIS
FNFNGTGFQIARRHTVCLT
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mRNA from alignment at CM002472.1:197388..197597+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7542 ID=rna7542|Name=rna7542|organism=Nannochloropsis gaditana|type=mRNA|length=210bp|location=Sequence derived from alignment at CM002472.1:197388..197597+ (Nannochloropsis gaditana)
atgacaATTTttgatgaaagaggagacggaggtgaGAGATACATTCAGGC
GAAAATGCTACAGAGTAAAACCAAAATTGCAAGGTGTTTCCATGAAAACT
ATAGTAGATATGGTTTCCTGTGTCGCGCAGTCGCAACTTCCCAAATTTCT
TTTAATTTTAATGGTACAGGTTTTCAAATTGCTCGACGCCACACCGTATG
CTTGACCTAG
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Coding sequence (CDS) from alignment at CM002472.1:197388..197597+

>rna7542 ID=rna7542|Name=rna7542|organism=Nannochloropsis gaditana|type=CDS|length=210bp|location=Sequence derived from alignment at CM002472.1:197388..197597+ (Nannochloropsis gaditana)
atgacaATTTttgatgaaagaggagacggaggtgaGAGATACATTCAGGC
GAAAATGCTACAGAGTAAAACCAAAATTGCAAGGTGTTTCCATGAAAACT
ATAGTAGATATGGTTTCCTGTGTCGCGCAGTCGCAACTTCCCAAATTTCT
TTTAATTTTAATGGTACAGGTTTTCAAATTGCTCGACGCCACACCGTATG
CTTGACCTAG
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Synonyms
Publications