rna7540, rna7540 (mRNA) Nannochloropsis gaditana

Overview
Namerna7540
Unique Namerna7540
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2423
Alignment locationCM002472.1:194761..195955 -

Link to JBrowse

Properties
Property NameValue
ProductYbaB-like DNA-binding protein
Orig transcript idgnl|cribi|Naga_100043g29.7257.mrna
Orig protein idgnl|cribi|Naga_100043g29.7257
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:194761..195955 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100043g29gene7299Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7540rna7540-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23174.1cds7522Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7540 ID=rna7540|Name=rna7540|organism=Nannochloropsis gaditana|type=mRNA|length=2423bp
TACCCCCTTTCCATGTTGTGACGCGACTTCACAGGAAGTTCAAGTCGAGG
TCGGATGAGCATCTGAGAGATGTCATACCCGAACCCCTCCTTCACCCGTG
GCCCCGTAAATTTGCCCGCAAATAACCGCTGCAGTACCCTCTCGTTATCA
CAAAACAGATTGAAATTAACATCAAAAAGGGCTCACAGAAAGACATGGCA
CCAAGCAGCAACTTGCGGCGGCCTAGCCATGTGATTTGTCGAGAAGAGAG
TGAAGGGAGGGAGAGCAATGAAGACACTCAGCCTTCGCGCAACAGCTCTA
TGAGCTCGAGTTCCCGTCATGCCCCCGATGACAGTGCTCTACATGTAAAA
AGCCCTTTTAGCGGGCAAATAGGTACGAGATGCGAGGGCGGCAGGTCGTG
GTTCTCGATGTTTGCCGCCGTCTGCCTCGTCCTTTTGGTTTTTGATCGGG
CGCCAGGGGCTGAAGCTGTCAACCGGGGCCTTCGAAAGCGGCGCTCTCAG
ACACCGCCAGAGCCGCCAACTTCAAATGCAACGACAGCTATGGATTCGGC
TATCACTGTCAAGCTGCCAGCGGTACCTCCGTTCAAAGTGGGACGCATTT
CTGTTCCTCATTCGGACCTGACACTCTCTCGCATCGCCTACGGCTCTTTG
CACTTCCCTGAATTTAAGGACAACGTGACGGGCCTGACTGCGGCCTTGGA
GGCCTGCCAAAAAGTTGGCGTGACCACCATAGACCTGGCGGACGTGTATG
GTTGGATTGAGGACGGACACGGCGCTGCTAACGATATATTTGCTGAGGCG
CTCAAGGCCAGCCCAGGTCTGCGCTCTAAGCTGGAGCTTGTAACCAAATT
TGGAATCCGTCTTAGCGGAGGATACCACATCGACCTCTCTCCCGAGTGGA
TCCACGAATCTTTGGATCGGTACCTCACGCTCTTTGACACGGACTATGTG
GACGTGCTCATGATCCACAACCCCGACCCGAACATGGACGTGCAGGCCGT
CGCCCAGGCCTTCAAGGAGATCAAGGAGGCTCGCAAAGCCCGAGCCTTCG
GGATCTCCAACTTCCACCAGTGGGAGTACGAAGCGCTGCGAGACGCCATG
GCGGCGGAGGGTCTGAAGCTCTCGGTGCACGAAATGGAGACCTCCGTGCT
CCACCCCGACCGCATCACCGACGACACCGTCTCGTACTTCTCAACGGGCG
AGAACGAGCTTCGGATCCTGGGATGGGGTGCGCTGGGCGGCGATCCCTAC
GGGGGCTCGAACTTGTTGTTCGGGTCAGAGGGAGAGCGCGAGAAGCGCAT
CGTGGAGACCCTGGCGCTGAAGGGGCAGGAGCTGGCTCTGGAGGAGGATG
CGGGCCTTGGAAAGAAGCAAACCGTGACCTTCGGGCCCGACGAGGTAGCG
GTGGCCTGGCTGCTGCACCACCCGGGAAACATCGTGCCCATCATCGGCAC
GACGGCCGTGGCGCGCCTGATGGCGCAGACCACCCCCGCCGAGAAAATCC
CCTTCAGGGATTTGGACTTCGACGACATCATGAGCGCCCTCCACTACTAG
GCCTTTGCGGGAGGGGAGGAGGTGGCATATGTAACATTGGTGGACATGAT
CTTTGCGAGACGCGACTGGGCCTGAACGGCGCGTGCATGTAGACAAGCTG
TTCGTCGGAAAGGTTGATGAGTTTGGAGGGTAGCTTGATAGATATGGGAG
GGGGTAACCAAAAGCGTCGCCAGGCTCTTTTCTAGAGTGTTTTGTAACGT
GTGACTCTGAGAGTCCTTATCAACAATCATATGCGGCGTCTAACGGGTCA
GGTGGGGAGATCTCACCTGATCCCTGTAGAGGCTGGGAGTGTTCCAGCCT
CGACCTGTCAGAAGTGGAACTGCGAAAGCGGGAAAAGGGCTAGCGTATTA
TGGGTTTTAACCTCAGGGATCAGGAAAATGGAGTGTAGGCGACGGAATTG
GCGGATATAATGCTTTTGGGAAGCGGGACCGAGGTTCCGAAACACATCGG
ACAGCGTTTTCCCGATGGTGGTGGTTGGGTCGAGGGGAAAGGGCGTAACG
AACAGTTGAAGTGGAGGCGCGCATTCTAAGGTTCCTGATCGCACTCTGTG
ACGCAATACACTTTTCAGGAAAGTGATGGCAGTGTGTTGAAAGGAGTGAA
GCGCCTCTTGATATTCGTGTACGCTCGGGTTTGCTGTAGCGAATGCGGGT
CGGAAAGGCTCCACCATTGTTCGGAATGCGATTAGAAAGAGAAGGAGGCG
ACTTTTTCTTCGCGAACAAGTCCGGATGACAAGAGTAAACAAGAAAATAA
TGCTGAACGAAGCATAAGAAAATAATGCTGAACGAAGCATGAGAAACATC
TTGATTGAAAGGCCTCTCAGTTGCAGAGGCGGGCAGCGCTCTGCGTAGTT
AACTTGTTGGTTAAGTCTCTTTC
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protein sequence of rna7540

>rna7540-protein ID=rna7540-protein|Name=rna7540|organism=Nannochloropsis gaditana|type=polypeptide|length=244bp
MSSSRQFLWLTREIVWCRGKYLTLTSTKQSPCQWCYTFLCHMSLFSIPPG
SPKLTDTFRPAMRILMFLAFSMASFASAFMVPTSGRAFTSISHPTMAPSV
SRGDAKGRIFMLFGGSDKKKKEESAAGKSSSKLNPFDAMSKMNELATKSN
TLTKDLAGTIVSGEAMDGKVKVTFTGTQVPMEVEIAEDALGAGAAALSAA
LTEAMKEGHSKSVQLQQSKLTAFYDELGLGAAMKEMGKGMGGGQ
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mRNA from alignment at CM002472.1:194761..195955-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7540 ID=rna7540|Name=rna7540|organism=Nannochloropsis gaditana|type=mRNA|length=1195bp|location=Sequence derived from alignment at CM002472.1:194761..195955- (Nannochloropsis gaditana)
GGATGCATTGCTTTCTCTCTCCACCTGCACCACCCCGGTTTACGGAGTCA
TTCGCAGTCCTCACGTCGACAAATCGTGTTTCAAAGTCACGTAAGTGACA
TCATGTCGTCATCACGCCAATTTTTATGGCTCACAAGGGAAATAGTATGG
TGCAGGGGAAAGTATCTTACTCTTACATCAACTAAGCAATCACCTTGCCA
GTGGTGCTACACTTTCCTGTGTCACATGTCTCTTTTCTCTATACCGCCAG
GATCCCCTAAGTTGACAGACACTTTTCGTCCAGCTATGCGCATTTTAATG
TTTTTGGCCTTTAGCATGGCCTCTTTCGCTTCGGCTTTTATGGTGCCCAC
AAGCGGGCGGGCCTTCACCTCGATTTCCCACCCTACAATGGCTCCATCCG
TCTCCCGCGGCGATGCCAAGGTAAGGAAGATACACGATGCTAATTGTAGT
TGGTCACGACCCAGTAGCTGAGTGTGTAAACCTCATCGAATTTTCTTAAC
AAATCAGGGTCGGATTTTTATGCTGTTTGGTGGTAGTGACAAGAAAAAAA
AGGAGGAAAGCGCAGCCGGCAAGTCGAGCAGCAAACTCAACCCTTTCGAT
GCCATGTCTAAGATGAACGAGCTGGCCACCAAAAGTAATACTCTAACTAA
GGATCTGGCAGGAACCATTGTCTCGGGGGAAGCCATGGACGGAAAGGTAA
AAGTCACTTTTACTGGCACCCAAGTGCCTATGGAAGTTGAAATTGCTGAG
GACGCGCTCGGTGCAGGCGCGGCCGCCCTTTCAGCGGCTCTGACAGAAGC
GATGAAGGAGGGCCATTCAAAATCCGTGCAGCTCCAGCAATCCAAACTCA
CCGCCTTCTACGATGAGCTAGGTTTAGGGGCCGCAATGAAAGAGATGGGG
AAGGGCATGGGCGGTGGACAGTAAAAATGACCAGGGGAGTCCACAAAAAA
AGGCAGCACGCAATCGGAGTAACCCAAACAAATTTCAAATAAGGTCTGTG
TGCGAGGATCGTGCTTTTACAGAAGGCTAACCATTTCAAAAGGTCAAAGT
CTGAAAAAGAAGAGACAAATTTTGCACGCCTGCTGACTGCAAGAAAAGAT
GGAAAGAGACTTAACCAACAAGTTAACTACGCAGAGCGCTGCCCGCCTCT
GCAACTGAGAGGCCTTTCAATCAAGATGTTTCTCATGCTTCGTTC
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Coding sequence (CDS) from alignment at CM002472.1:194761..195955-

>rna7540 ID=rna7540|Name=rna7540|organism=Nannochloropsis gaditana|type=CDS|length=1470bp|location=Sequence derived from alignment at CM002472.1:194761..195955- (Nannochloropsis gaditana)
GGTCGGATTTTTATGCTGTTTGGTGGTAGTGACAAGAAAAAAAAGGAGGA
AAGCGCAGCCGGCAAGTCGAGCAGCAAACTCAACCCTTTCGATGCCATGT
CTAAGATGAACGAGCTGGCCACCAAAAGTAATACTCTAACTAAGGATCTG
GCAGGAACCATTGTCTCGGGGGAAGCCATGGACGGAAAGGTAAAAGTCAC
TTTTACTGGCACCCAAGTGCCTATGGAAGTTGAAATTGCTGAGGACGCGC
TCGGTGCAGGCGCGGCCGCCCTTTCAGCGGCTCTGACAGAAGCGATGAAG
GAGGGCCATTCAAAATCCGTGCAGCTCCAGCAATCCAAACTCACCGCCTT
CTACGATGAGCTAGGTTTAGGGGCCGCAATGAAAGAGATGGGGAAGGGCA
TGGGCGGTGGACAGTAAATGTCGTCATCACGCCAATTTTTATGGCTCACA
AGGGAAATAGTATGGTGCAGGGGAAAGTATCTTACTCTTACATCAACTAA
GCAATCACCTTGCCAGTGGTGCTACACTTTCCTGTGTCACATGTCTCTTT
TCTCTATACCGCCAGGATCCCCTAAGTTGACAGACACTTTTCGTCCAGCT
ATGCGCATTTTAATGTTTTTGGCCTTTAGCATGGCCTCTTTCGCTTCGGC
TTTTATGGTGCCCACAAGCGGGCGGGCCTTCACCTCGATTTCCCACCCTA
CAATGGCTCCATCCGTCTCCCGCGGCGATGCCAAGGGTCGGATTTTTATG
CTGTTTGGTGGTAGTGACAAGAAAAAAAAGGAGGAAAGCGCAGCCGGCAA
GTCGAGCAGCAAACTCAACCCTTTCGATGCCATGTCTAAGATGAACGAGC
TGGCCACCAAAAGTAATACTCTAACTAAGGATCTGGCAGGAACCATTGTC
TCGGGGGAAGCCATGGACGGAAAGGTAAAAGTCACTTTTACTGGCACCCA
AGTGCCTATGGAAGTTGAAATTGCTGAGGACGCGCTCGGTGCAGGCGCGG
CCGCCCTTTCAGCGGCTCTGACAGAAGCGATGAAGGAGGGCCATTCAAAA
TCCGTGCAGCTCCAGCAATCCAAACTCACCGCCTTCTACGATGAGCTAGG
TTTAGGGGCCGCAATGAAAGAGATGGGGAAGGGCATGGGCGGTGGACAGT
AAATGTCGTCATCACGCCAATTTTTATGGCTCACAAGGGAAATAGTATGG
TGCAGGGGAAAGTATCTTACTCTTACATCAACTAAGCAATCACCTTGCCA
GTGGTGCTACACTTTCCTGTGTCACATGTCTCTTTTCTCTATACCGCCAG
GATCCCCTAAGTTGACAGACACTTTTCGTCCAGCTATGCGCATTTTAATG
TTTTTGGCCTTTAGCATGGCCTCTTTCGCTTCGGCTTTTATGGTGCCCAC
AAGCGGGCGGGCCTTCACCTCGATTTCCCACCCTACAATGGCTCCATCCG
TCTCCCGCGGCGATGCCAAG
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Synonyms
Publications