rna7538, rna7538 (mRNA) Nannochloropsis gaditana

Overview
Namerna7538
Unique Namerna7538
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length843
Alignment locationCM002472.1:191851..192493 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100043g26.7244.mrna
Orig protein idgnl|cribi|Naga_100043g26.7244
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:191851..192493 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100043g26gene7297Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7538rna7538-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23161.1cds7520Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7538 ID=rna7538|Name=rna7538|organism=Nannochloropsis gaditana|type=mRNA|length=843bp
ATGACATTCTGTACTCACAGCCCGCTTGAACATTTGCCGGCTTGCGCTTC
CAGCGAAGTCGTCCATCTCAACACATTTGTCCCTTCCCCATCAAACCCAT
CAAACAGGCCAGCGTCAGACGTGTGCTCTTCCGGTACGACAAAAAAAGAA
AATTCGTACTCTTTTGCTGAAAATCTGACTCGCGAGATTCATGGTAATAA
CGATCCTATCATCCCTTGGCAACTTCAGTCTATTCTCGAATATAATGGCG
GAGCAGTTGTGGCGATGGTGGGCAAGAATTGTGTCGCCATAGCCAGTGAC
TTGCGGTATGGCGTCCAGGCGCAGACAGTGGCCTGCAATTTTCCCAAGGT
CCACAAGATGAGCGACCGCCTCTTCGTGGGGCTCTCGGGCCTGGCCACAG
ACATCCAGACCCTCGAGCAGCTCTTACGTTTTCGCCTCAACCTGTACAAG
CTGCGAGAGGAACGAGACATAAAGCCGGAGACTTTCTCCGCCCTCCTCTC
CCACATCCTATACGAGAAGCGTTTCGGACCTTACTTCGTGGAGCCCCTGG
TAGCGGGGTTGAGGGCGGAGGACAACACCCCTTTCATTTCTGGCATGGAT
CTGATCGGCGCCCCTGTGTTCGCTAAGGACTTTGTGGTGGCTGGCACGTG
CGCCGCCAACCTGTACGGGCTGTGTGAGTCCTTCTTTAAGCCAGATTTAG
AGCCAGAGCAACTCTTCGAGGTTCTCTCTCAGTCCTTGCTCGCGTCCGTA
GATAGGGACGCTCTGAGCGGCTGGGGCGCGGTCGTCCACGTCATTACTCC
AGATGGTGTGACGTCGCGGACATTGAAAGCCAGACAGGATTAA
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protein sequence of rna7538

>rna7538-protein ID=rna7538-protein|Name=rna7538|organism=Nannochloropsis gaditana|type=polypeptide|length=128bp
MLIRPRLELPVKSRHNMERGYFTHHTSSVYVQRLGCNKPLSCLRNLNLPF
DVSWLLVKRADTGWREGGREVIILTWFSMPFPPKEIADFQWFDTRRSTGK
GFFLVFVNDAAINFTFYLSESYHLKRNK
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mRNA from alignment at CM002472.1:191851..192493-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7538 ID=rna7538|Name=rna7538|organism=Nannochloropsis gaditana|type=mRNA|length=643bp|location=Sequence derived from alignment at CM002472.1:191851..192493- (Nannochloropsis gaditana)
ATGCTCATCCGACCTCGACTTGAACTTCCTGTGAAGTCGCGTCACAACAT
GGAAAGGGGGTACTTCACACACCACACATCGTCTGTATACGTGTAAGCGG
AGGCAAAAAAGGGTCAATGGCACCGAGAAAGCCGTACTTGCAACGGCGGG
CGGGGAATGTGCAACGTGTTTGCGGTTTGGGCGTGTCTAAATCCCGCGCT
CCTGCCTTCAACAGCCTCGAGGCTAGGCCCGCGCGTGGATTGGACCTCGG
CCGGCAACTTTTTCTGAGTGCACGTGTGGAAAAATAGTCAACGACTGGGC
TGTAACAAGCCCTTGTCCTGTCTGCGAAACTTGAATTTGCCGTTCGATGT
ATCATGGCTCCTGGTTAAAAGAGCTGATACTGGGTGGAGGGAGGGAGGGA
GGGAGGTAATCATTTTGACCTGGTTCTCCATGCCTTTTCCCCCGTCCTCC
CTCCACCTGCACGCATCAGCTCTGAGTACATGTCACGGATGGAATGGGAA
ATAGAAAAGAAATAGCCGACTTTCAATGGTTTGATACGCGTAGGTCAACA
GGCAAGGGGTTTTTCTTGGTCTTTGTCAACGATGCGGCCATTAATTTTAC
TTTCTACTTGAGTGAGTCATACCACTTAAAAAGGAATAAGTAA
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Coding sequence (CDS) from alignment at CM002472.1:191851..192493-

>rna7538 ID=rna7538|Name=rna7538|organism=Nannochloropsis gaditana|type=CDS|length=1161bp|location=Sequence derived from alignment at CM002472.1:191851..192493- (Nannochloropsis gaditana)
AAAAGAAATAGCCGACTTTCAATGGTTTGATACGCGTAGGTCAACAGGCA
AGGGGTTTTTCTTGGTCTTTGTCAACGATGCGGCCATTAATTTTACTTTC
TACTTGAGTGAGTCATACCACTTAAAAAGGAATAAGTAATCAACGACTGG
GCTGTAACAAGCCCTTGTCCTGTCTGCGAAACTTGAATTTGCCGTTCGAT
GTATCATGGCTCCTGGTTAAAAGAGCTGATACTGGGTGGAGGGAGGGAGG
GAGGGAGGTAATCATTTTGACCTGGTTCTCCATGCCTTTTCCCCCATGCT
CATCCGACCTCGACTTGAACTTCCTGTGAAGTCGCGTCACAACATGGAAA
GGGGGTACTTCACACACCACACATCGTCTGTATACGTAAAAGAAATAGCC
GACTTTCAATGGTTTGATACGCGTAGGTCAACAGGCAAGGGGTTTTTCTT
GGTCTTTGTCAACGATGCGGCCATTAATTTTACTTTCTACTTGAGTGAGT
CATACCACTTAAAAAGGAATAAGTAATCAACGACTGGGCTGTAACAAGCC
CTTGTCCTGTCTGCGAAACTTGAATTTGCCGTTCGATGTATCATGGCTCC
TGGTTAAAAGAGCTGATACTGGGTGGAGGGAGGGAGGGAGGGAGGTAATC
ATTTTGACCTGGTTCTCCATGCCTTTTCCCCCATGCTCATCCGACCTCGA
CTTGAACTTCCTGTGAAGTCGCGTCACAACATGGAAAGGGGGTACTTCAC
ACACCACACATCGTCTGTATACGTAAAAGAAATAGCCGACTTTCAATGGT
TTGATACGCGTAGGTCAACAGGCAAGGGGTTTTTCTTGGTCTTTGTCAAC
GATGCGGCCATTAATTTTACTTTCTACTTGAGTGAGTCATACCACTTAAA
AAGGAATAAGTAATCAACGACTGGGCTGTAACAAGCCCTTGTCCTGTCTG
CGAAACTTGAATTTGCCGTTCGATGTATCATGGCTCCTGGTTAAAAGAGC
TGATACTGGGTGGAGGGAGGGAGGGAGGGAGGTAATCATTTTGACCTGGT
TCTCCATGCCTTTTCCCCCATGCTCATCCGACCTCGACTTGAACTTCCTG
TGAAGTCGCGTCACAACATGGAAAGGGGGTACTTCACACACCACACATCG
TCTGTATACGT
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Synonyms
Publications