rna7529, rna7529 (mRNA) Nannochloropsis gaditana

Overview
Namerna7529
Unique Namerna7529
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1778
Alignment locationCM002472.1:169452..171789 -

Link to JBrowse

Properties
Property NameValue
Productputative oxidoreductase ycsn
Orig transcript idgnl|cribi|Naga_100043g16.7242.mrna
Orig protein idgnl|cribi|Naga_100043g16.7242
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:169452..171789 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100043g16gene7288Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23159.1cds7511Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7529rna7529-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7529 ID=rna7529|Name=rna7529|organism=Nannochloropsis gaditana|type=mRNA|length=1778bp
GACTTGCTCTGATCTGACGACGAAGAGTGATCCTACGGGCGAATGCCTGC
TTTGAGACCGTTGAATACCTCGGACAACTGGAGTTAGAAGAAGCACGTTC
AGTGTGACGGGCATTATTCAGTAAACCCCGGATTAAAGATGGCGGGCATG
GCAATTTCGAACATTGTGTTGGCCGTATCCTTCGATTCCGGGCACAAATT
AGTTATTATCCATAAAAAATTACTTGTCAATTTTCTGGTCATTTGAATGA
AGCCTCGGTCGGCACATGGAGTGGTCTCTCGTAAGGCTGGCTACTGGGAA
GCCCGTTGTATGAGCGACCTACTATATTTCTCGCACGAACTTGGTAACTT
TCACGATTCACGTGTCACAATAGAAGCTCAAATTGCCTGTCCGTCCTACC
CGTAGCTATCCATCATTCGTCTCGCTGACAGCACTCTGAAGTCAAGTTGA
TGTTAACCTTGTCAATGATGAAAGGAAGAGCGCTCTAGCATGCCAAAGAA
CACCACAATGACAGAGCTTTCGAACGAATTAGCTCATCCGAAGTCGTCCC
TGTCACCTTCTCGGCCCCGACATGCCCTTACACCTGTGTTTGCCGGGGGT
TTGGCAGGCTGTACGTACCAATGCAATCCATTGCCAGCTTAAACAGCACT
ATGCACTCAATGCCTTTACGGGACCTTTGGACTGTGTACGCTTCACCCTA
AGAACTAAAGGCCCTCTAGGTTTATACAAAGGTCTCACACCATGGCTGGT
ATTTGCTTTCCCACGGTCCGCTGTCCGATTTTCAACCTATGAGTTCGTTA
GTCAACGATTTCGGGAAACCGTCTCGAAAGAAAGCCAAGAAGGCGAATTG
CAGAACGGGAAACTTGATCCATATCTCAGTATGGCAGCAGGATCCATCGC
TGGTGCAGTGGAATTCCTGACTGTTGGAACACCTATGCAATGCATCCAAG
TCAAGATGGCGCATGATGCCTACTCTAAGGTTCCACGATTTCACGGCTTT
GTTAGTGCAATAGTAGGAATCGTTCGGGCAGAAGGTCTTTTGAAAGGGCT
GTATGCAGGACTAGGTCCAACCGTGTTAAAGGGAGCCGTGAATAATTGCA
TCCGATTCTCAACTTTTTCAGAACTCAAGTATATTTACCAGAAATACAAA
CTAAATGTTGCAGATAACAGATTAACGGCTACGTTTGAGAACTTCTCAAC
CTGCCCGGAAAGCGACCATTTTCAGGCGGTCCACGAAGCTATTTTGAATC
CACTGGAAACAATGTTGCTGGGCGCTACATCAGGAGGACTTTCCGCAATC
GCAACGCATCCTATCGACACAGTTAAATCAAACATGCAGTCGTTGAGTGC
TGACAAGTATACATCATCTTGGAATTGTTTTCTGTCTATCTTACGCAACC
AAGGTCTTCCTGGGCTTTATCAGGGTATGGCTCCCCGATTTGTCCGTGTT
TCTCTTGAGATTGGCCTACACTTTTCGCTCTATGAACAAATAGCTTGTCG
TATTGACGAAAGCTTGTTCAATTAAGGACTTGATGACGATTGCGTTCGGG
TGGGAGTGGGTCTCTCTTGACAAACAAAATATGAAACCAACAAATTCACT
CGCCTTGAGCGCTTCTGCCAGCTCCGCTGAGACACGGAACACATCGTCCA
AGCAATAGTACTTCATAAATGCAAAGCGGTCAGAGGGAGTAAAGCGTTTG
CTAAATTATCATTCTGATTGCTGCAGTAAATGGATGAAGCAATTGAATAT
TGAGGTGCGTTCTTTTCATACGTCATTT
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protein sequence of rna7529

>rna7529-protein ID=rna7529-protein|Name=rna7529|organism=Nannochloropsis gaditana|type=polypeptide|length=381bp
MKEYGRGGLIALLVLLAVVFEAQGDVKRIKLAPGPSGMETSQIGLGGLHF
AELQASGGATALRDLLLVALQNNITLLDLADIYAYNTSAELVGQAFALQP
GLRERFQIVYKTGIVFPDAPVQYLDSSGQYVANAVDIALAQLGTTYIDVL
MPHAPDPLLDATELVTTFKKLKSEGKVRYFGVANYPPSKLSLLQAAMEKQ
QLSLTTSELECSVLTPTALFDGRLDELQELGIAPLAWGPLGGDPLAGVNR
LFNFPNGARQGRILAALQEVATEMGPDVTTDQVAVAWLLRHPSRIVPLLG
TVNAYRLRWQAAATNLHMTRAQWTQIMGASAVSQYRRWEQLNDGEWHDVA
NDYQKNTYGSPLGVDVPVGFCDFTSCKLPVG
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mRNA from alignment at CM002472.1:169452..171789-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7529 ID=rna7529|Name=rna7529|organism=Nannochloropsis gaditana|type=mRNA|length=2338bp|location=Sequence derived from alignment at CM002472.1:169452..171789- (Nannochloropsis gaditana)
TCGGCCGCTCGCCTCCCTGCCCTGTCCGGCCTTGTCACATTACAGGGATG
AAGGACAAGTGTCAGTGCACTTCTGGCAAAAGCGCCTTCCACATTAAAGC
TGTTTAGAACGCACTTTCTGGTATGACATTAAACGATGTACGCAAACACT
GAGTGAACGTCTTGCATTGCTGACTTCAACTTCGTGCCATGCCCTCTTCC
TCGTGTCCTGGAACTCGCTTCACCCTGTCACTGGAATTAACTCCACTCCC
CATATAACAGACCACAGCCTAAAAGTTTGACACATTTTGCGCAGTATTTT
ACCCCGTCCCATGAAAGAATACGGCCGAGGAGGGCTGATTGCCCTATTAG
TCCTCTTGGCTGTCGTCTTTGAGGCGCAAGGTGATGTAAAACGCATCAAA
CTAGCTCCTGGTCCGTCCGGCATGGAAACCTCCCAAATTGGGTTGGGGGG
ACTTCATTTTGCTGAGCTGCAAGCAAGTGGAGGCGCAACAGCGCTCAGAG
ACCTCCTTCTTGTTGCGCTTCAAAACAATATCACGCTGCTGGACTTGGCT
GACATCTATGCTTATAACACTAGCGCTGAGCTTGTAGGGCAGGCGTTCGC
GTTACAACCAGGACTACGAGAAAGGTTCCAGATTGTGTACAAGACAGGCA
TTGTATTCCCGGACGCTCCTGTACAATATCTCGACAGTAGTGGTCAGTAC
GTGGCAAATGCTGTCGACATCGCTCTAGCTCAGTTGGGCACCACGTACAT
AGATGTTCTTATGCCTCATGCACCTGATCCACTACTTGATGCAACGGAAC
TAGTTACCACATTTAAAAAGTTGAAGAGTGAGGGTAAAGTCCGCTATTTC
GGTGTGGCCAACTATCCTCCAAGCAAGCTTTCTCTCCTCCAAGCTGCTAT
GGAAAAGCAGCAATTGAGTCTGACAACCTCCGAGCTGGAATGCTCTGTCC
TCACTCCTACGGCTCTTTTCGACGGCCGCCTGGATGAGCTTCAAGAATTG
GGGATTGCACCGCTCGCGTGGGGTCCTCTAGGAGGAGACCCTCTTGCCGG
TGTCAACCGGTTATTCAACTTCCCGAATGGTGCGCGGCAGGGGCGAATTC
TAGCTGCTCTTCAAGAAGTGGCAACGGAAATGGGACCTGATGTGACGACT
GACCAAGTAGCCGTTGCATGGCTTCTTCGACACCCCTCGCGAATCGTACC
GCTTTTGGGAACTGTGAATGCGTACAGGCTTAGATGGCAAGCAGCAGCAA
CAAACTTGCATATGACTCGGGCGCAATGGACTCAGATCATGGGTGCTTCT
GCAGTCTCTCAATATCGTCGATGGGAGCAACTAAATGATGGAGAGTGGCA
TGATGTCGCAAACGATTACCAGAAAAATACTTACGGCTCGCCATTGGGGG
TAGACGTTCCAGTAGGTTTCTGTGACTTTACCAGTTGTAAGTTGCCAGTA
GGGTAATCTACCTACCGCACGGCTTCCATGTATTGTATGCTTTTGTACTC
AAGAGGAAGTGTTGAGCACTGCTTAATCAATGAAGCACAAGACAGACACA
GCAAAGCATCTTGGAGGTCAATACTATGCGATGCTTTGCTGGGTAGCTGC
GTCTCATGGTTGTACATCAAATTGGGAAGAACAAATTCCTCATAAGACAA
TGTTTTTTCGTAGGATATCCAACCAGAATTCATATAGGCACGGAACGAAA
AAAAACATACCCAGATGTATATAAGTGAGCATTCAGTATTTTTATTCAGA
TGTCCTAAATTATTAAAACAATGCATTTATCACCTTTTTTTTGGCTTTTA
CTGGTATTTGTTTGAGCAGCGAGCTCGGGACGTGACGCGTGAAATGTTCA
GCGTGAGCAAAAGCTTTGAAAGAGGGCAACAAGCTTAAGCATCACTCTAC
ACACTTTGGGGCCAGATAGACCCTCAATTTCGTAGGTGAGAAATGTACGA
GCTTTCGGGGCTAAAAAACCGAGTCTGCACTCACACTTACGGACGAGCGA
CACTTGTAAATTGGTTTCAAGAGTTGTCAGCTCTTCTCAAATCGCAAATA
TTTGCGCTTAGTTCAAAAGTGTTGTAACATCATCGAAACTTCAGTTTCGT
GTTTACTTAAAGAGTATTAAGTACTACTACTACATACGTTTATCAAATTT
TCTATATGTAGCGAGGCTTGCAGGTAGCAGGAGAAATATTCGTACATTGA
AAAAGGAATCAACGATGAGAGGGAAAATTATTCCTCGCATAATGAGTCCA
TGTGAGATATACCATTTACACATTGTGTAAAACATGACGATTCAAAAGTC
ACATCCCCACAACAACGAGACATTCATTCCATGATTCC
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Coding sequence (CDS) from alignment at CM002472.1:169452..171789-

>rna7529 ID=rna7529|Name=rna7529|organism=Nannochloropsis gaditana|type=CDS|length=1146bp|location=Sequence derived from alignment at CM002472.1:169452..171789- (Nannochloropsis gaditana)
ATGAAAGAATACGGCCGAGGAGGGCTGATTGCCCTATTAGTCCTCTTGGC
TGTCGTCTTTGAGGCGCAAGGTGATGTAAAACGCATCAAACTAGCTCCTG
GTCCGTCCGGCATGGAAACCTCCCAAATTGGGTTGGGGGGACTTCATTTT
GCTGAGCTGCAAGCAAGTGGAGGCGCAACAGCGCTCAGAGACCTCCTTCT
TGTTGCGCTTCAAAACAATATCACGCTGCTGGACTTGGCTGACATCTATG
CTTATAACACTAGCGCTGAGCTTGTAGGGCAGGCGTTCGCGTTACAACCA
GGACTACGAGAAAGGTTCCAGATTGTGTACAAGACAGGCATTGTATTCCC
GGACGCTCCTGTACAATATCTCGACAGTAGTGGTCAGTACGTGGCAAATG
CTGTCGACATCGCTCTAGCTCAGTTGGGCACCACGTACATAGATGTTCTT
ATGCCTCATGCACCTGATCCACTACTTGATGCAACGGAACTAGTTACCAC
ATTTAAAAAGTTGAAGAGTGAGGGTAAAGTCCGCTATTTCGGTGTGGCCA
ACTATCCTCCAAGCAAGCTTTCTCTCCTCCAAGCTGCTATGGAAAAGCAG
CAATTGAGTCTGACAACCTCCGAGCTGGAATGCTCTGTCCTCACTCCTAC
GGCTCTTTTCGACGGCCGCCTGGATGAGCTTCAAGAATTGGGGATTGCAC
CGCTCGCGTGGGGTCCTCTAGGAGGAGACCCTCTTGCCGGTGTCAACCGG
TTATTCAACTTCCCGAATGGTGCGCGGCAGGGGCGAATTCTAGCTGCTCT
TCAAGAAGTGGCAACGGAAATGGGACCTGATGTGACGACTGACCAAGTAG
CCGTTGCATGGCTTCTTCGACACCCCTCGCGAATCGTACCGCTTTTGGGA
ACTGTGAATGCGTACAGGCTTAGATGGCAAGCAGCAGCAACAAACTTGCA
TATGACTCGGGCGCAATGGACTCAGATCATGGGTGCTTCTGCAGTCTCTC
AATATCGTCGATGGGAGCAACTAAATGATGGAGAGTGGCATGATGTCGCA
AACGATTACCAGAAAAATACTTACGGCTCGCCATTGGGGGTAGACGTTCC
AGTAGGTTTCTGTGACTTTACCAGTTGTAAGTTGCCAGTAGGGTAA
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Synonyms
Publications