rna7528, rna7528 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7528
Unique Name	rna7528
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1807
Alignment location	CM002472.1:167195..169437 +

Link to JBrowse

Properties


Property Name	Value
Product	tricarboxylate transport mitochondrial-like protein
Orig transcript id	gnl\|cribi\|Naga_100043g14.7228.mrna
Orig protein id	gnl\|cribi\|Naga_100043g14.7228
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002472.1	supercontig	CM002472.1:167195..169437 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100043g14	gene7287	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7528	rna7528-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23145.1	cds7510	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002472.1:167195..169437+
coding sequence from alignment at CM002472.1:167195..169437+

mRNA sequence

>rna7528 ID=rna7528|Name=rna7528|organism=Nannochloropsis gaditana|type=mRNA|length=1807bp
AAGTCCCGCGGAAGGCAGCTTCTTTTCAAATGTTATCACTTGTAAAGGTC
GACTTGCTCTGATCTGACGACGAAGAGTGATCCTACGGGCGAATGCCTGC
TTTGAGACCGTTGAATACCTCGGACAACTGGAGTTAGAAGAAGCACGTTC
AGTGTGACGGGCATTATTCAGTAAACCCCGGATTAAAGATGGCGGGCATG
GCAATTTCGAACATTGTGTTGGCCGTATCCTTCGATTCCGGGCACAAATT
AGTTATTATCCATAAAAAATTACTTGTCAATTTTCTGGTCATTTGAATGA
AGCCTCGGTCGGCACATGGAGTGGTCTCTCGTAAGGCTGGCTACTGGGAA
GCCCGTTGTATGAGCGACCTACTATATTTCTCGCACGAACTTGGTAACTT
TCACGATTCACGTGTCACAATAGAAGCTCAAATTGCCTGTCCGTCCTACC
CGTAGCTATCCATCATTCGTCTCGCTGACAGCACTCTGAAGTCAAGTTGA
TGTTAACCTTGTCAATGATGAAAGGAAGAGCGCTCTAGCATGCCAAAGAA
CACCACAATGACAGAGCTTTCGAACGAATTAGCTCATCCGAAGTCGTCCC
TGTCACCTTCTCGGCCCCGACATGCCCTTACACCTGTGTTTGCCGGGGGT
TTGGCAGGCTTGCCAGCTTAAACAGCACTATGCACTCAATGCCTTTACGG
GACCTTTGGACTGTGTACGCTTCACCCTAAGAACTAAAGGCCCTCTAGGT
TTATACAAAGGTCTCACACCATGGCTGGTATTTGCTTTCCCACGGTCCGC
TGTCCGATTTTCAACCTATGAGTTCGTTAGTCAACGATTTCGGGAAACCG
TCTCGAAAGAAAGCCAAGAAGGCGAATTGCAGAACGGGAAACTTGATCCA
TATCTCAGTATGGCAGCAGGATCCATCGCTGGTGCAGTGGAATTCCTGAC
TGTTGGAACACCTATGCAATGCATCCAAGTCAAGATGGCGCATGATGCCT
ACTCTAAGGTTCCACGATTTCACGGCTTTGTTAGTGCAATAGTAGGAATC
GTTCGGGCAGAAGGTCTTTTGAAAGGGCTGTATGCAGGACTAGGTCCAAC
CGTGTTAAAGGGAGCCGTGAATAATTGCATCCGATTCTCAACTTTTTCAG
AACTCAAGTATATTTACCAGAAATACAAACTAAATGTTGCAGATAACAGA
TTAACGGCTACGTTTGAGAACTTCTCAACCTGCCCGGAAAGCGACCATTT
TCAGGCGGTCCACGAAGCTATTTTGAATCCACTGGAAACAATGTTGCTGG
GCGCTACATCAGGAGGACTTTCCGCAATCGCAACGCATCCTATCGACACA
GTTAAATCAAACATGCAGTCGTTGAGTGCTGACAAGTATACATCATCTTG
GAATTGTTTTCTGTCTATCTTACGCAACCAAGGTCTTCCTGGGCTTTATC
AGGGTATGGCTCCCCGATTTGTCCGTGTTTCTCTTGAGATTGGCCTACAC
TTTTCGCTCTATGAACAAATAGCTTGTCGTATTGACGAAAGCTTGTTCAA
TTAAGGACTTGATGACGATTGCGTTCGGGTGGGAGTGGGTCTCTCTTGAC
AAACAAAATATGAAACCAACAAATTCACTCGCCTTGAGCGCTTCTGCCAG
CTCCGCTGAGACACGGAACACATCGTCCAAGCAATAGTACTTCATAAATG
CAAAGCGGTCAGAGGGAGTAAAGCGTTTGCTAAATTATCATTCTGATTGC
TGCAGTAAATGGATGAAGCAATTGAATATTGAGGTGCGTTCTTTTCATAC
GTCATTT

protein sequence of rna7528

>rna7528-protein ID=rna7528-protein|Name=rna7528|organism=Nannochloropsis gaditana|type=polypeptide|length=317bp
MPLHLCLPGVWQAVRTNAIHCQLKQHYALNAFTGPLDCVRFTLRTKGPLG
LYKGLTPWLVFAFPRSAVRFSTYEFVSQRFRETVSKESQEGELQNGKLDP
YLSMAAGSIAGAVEFLTVGTPMQCIQVKMAHDAYSKVPRFHGFVSAIVGI
VRAEGLLKGLYAGLGPTVLKGAVNNCIRFSTFSELKYIYQKYKLNVADNR
LTATFENFSTCPESDHFQAVHEAILNPLETMLLGATSGGLSAIATHPIDT
VKSNMQSLSADKYTSSWNCFLSILRNQGLPGLYQGMAPRFVRVSLEIGLH
FSLYEQIACRIDESLFN

mRNA from alignment at CM002472.1:167195..169437+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7528 ID=rna7528|Name=rna7528|organism=Nannochloropsis gaditana|type=mRNA|length=2243bp|location=Sequence derived from alignment at CM002472.1:167195..169437+ (Nannochloropsis gaditana)
GACTTGCTCTGATCTGACGACGAAGAGTGATCCTACGGGCGAATGCCTGC
TTTGAGACCGTTGAATACCTCGGACAACTGGAGTTAGAAGAAGCACGTTC
AGTGTGACGGGCATTATTCAGTAAACCCCGGATTAAAGATGGCGGGCATG
GCAATTTCGAACATTGTGTTGGCCGTATCCTTCGATTCCGGGCACAAATT
AGTTATTATCCATAAAAAATTACTTGTCAATTTTCTGGTCATTTGAATGA
AGCCTCGGTCGGCACATGGAGTGGTCTCTCGTAAGGCTGGCTACTGGGAA
GCCCGTTGTATGAGCGACCTACTATATTTCTCGCACGAACTTGGTAACTT
TCACGATTCACGTGTCACAATAGAAGCTCAAATTGCCTGTCCGTCCTACC
CGTAGCTATCCATCATTCGTCTCGCTGACAGCACTCTGAAGTCAAGTTGA
TGTTAACCTTGTCAATGATGAAAGGAAGAGCGCTCTAGCATGGTACGTGA
CAAATCGGTGCAGAAGCCCCTTGTCATACTCACAGATAACGTGCTGGCAA
CATGGTGTGTGTTCCGATCTATGTTTCAATTGAAGCTTACTTATATGTCG
TTTGGCATTATAGCCAAAGAACACCACAATGACAGAGCTTTCGAACGAAT
TAGCTCATCCGAAGTCGTCCCTGTCACCTTCTCGGCCCCGACATGCCCTT
ACACCTGTGTTTGCCGGGGGTTTGGCAGGCTGTACGTACCAATGCAATCC
ATGTATGGTCATTTGAATCCATGTTCTGCGAGTTACTTTCTTTTTGACAT
AATTTTCGTTCTATCGCACATTTCTTGTTTCTGGCCATGCATAGGGATAG
AAATCTGTTTAACTTTCCCTTTCGAATTTACGAAGACTCAGGTTCGTCCT
CACCCTTCAACACTCTCTCGAAAACCTTTAAGTTTTTGTGAGTATGTCTC
CGACGTTTTTATTTCTCTATTTTATACTACTGCAGTGCCAGCTTAAACAG
CACTATGCACTCAATGCCTTTACGGGACCTTTGGACTGTGTACGCTTCAC
CCTAAGAACTAAAGGCCCTCTAGGTTTATACAAAGGTCTCACACCATGGC
TGGTATTTGCTTTCCCACGGTCCGCTGTCCGATTTTCAACCTATGAGTTC
GTTAGTCAACGATTTCGGGAAACCGTCTCGAAAGAAAGCCAAGAAGGCGA
ATTGCAGAACGGGAAACTTGATCCATATCTCAGTATGGCAGCAGGATCCA
TCGCTGGTGCAGGTACATTATGTGAGGCGACAAATATCAATGTTCTGCCA
AAGTAATATGCGCACGATAATGGTAGTCCTCATGGAATCTATTGGATTTC
TTGTTTTTACCAAAAATGCACAGTGGAATTCCTGACTGTTGGAACACCTA
TGCAATGCATCCAAGTCAAGATGGCGCATGATGCCTACTCTAAGGTTCCA
CGATTTCACGGCTTTGTTAGTGCAATAGTAGGAATCGTTCGGGCAGAAGG
TCTTTTGAAAGGGCTGTATGCAGGACTAGGTCCAACCGTGTTAAAGGGAG
CCGTGAATAATTGCATCCGATTCTCAACTTTTTCAGAACTCAAGTATATT
TACCAGAAATACAAACTAAATGTTGCAGATAACAGATTAACGGCTACGTT
TGAGAACTTCTCAACCTGCCCGGAAAGCGACCATTTTCAGGCGGTCCACG
AAGCTATTTTGAATCCACTGGAAACAATGTTGCTGGGCGCTACATCAGGA
GGACTTTCCGCAATCGCAACGCATCCTATCGACACAGTTAAATCAAACAT
GCAGTCGTTGAGTGCTGACAAGTATACATCATCTTGGAATTGTTTTCTGT
CTATCTTACGCAACCAAGGTCTTCCTGGGCTTTATCAGGGTATGGCTCCC
CGATTTGTCCGTGTTTCTCTTGAGATTGGCCTACACTTTTCGCTCTATGA
ACAAATAGCTTGTCGTATTGACGAAAGCTTGTTCAATTAAGGACTTGATG
ACGATTGCGTTCGGGTGGGAGTGGGTCTCTCTTGACAAACAAAATATGAA
ACCAACAAATTCACTCGCCTTGAGCGCTTCTGCCAGCTCCGCTGAGACAC
GGAACACATCGTCCAAGCAATAGTACTTCATAAATGCAAAGCGGTCAGAG
GGAGTAAAGCGTTTGCTAAATTATCATTCTGATTGCTGCAGTAAATGGAT
GAAGCAATTGAATATTGAGGTGCGTTCTTTTCATACgtcattt

Coding sequence (CDS) from alignment at CM002472.1:167195..169437+

>rna7528 ID=rna7528|Name=rna7528|organism=Nannochloropsis gaditana|type=CDS|length=2862bp|location=Sequence derived from alignment at CM002472.1:167195..169437+ (Nannochloropsis gaditana)
ATGCCCTTACACCTGTGTTTGCCGGGGGTTTGGCAGGCTGTACGTACCAA
TGCAATCCATTGCCAGCTTAAACAGCACTATGCACTCAATGCCTTTACGG
GACCTTTGGACTGTGTACGCTTCACCCTAAGAACTAAAGGCCCTCTAGGT
TTATACAAAGGTCTCACACCATGGCTGGTATTTGCTTTCCCACGGTCCGC
TGTCCGATTTTCAACCTATGAGTTCGTTAGTCAACGATTTCGGGAAACCG
TCTCGAAAGAAAGCCAAGAAGGCGAATTGCAGAACGGGAAACTTGATCCA
TATCTCAGTATGGCAGCAGGATCCATCGCTGGTGCAGTGGAATTCCTGAC
TGTTGGAACACCTATGCAATGCATCCAAGTCAAGATGGCGCATGATGCCT
ACTCTAAGGTTCCACGATTTCACGGCTTTGTTAGTGCAATAGTAGGAATC
GTTCGGGCAGAAGGTCTTTTGAAAGGGCTGTATGCAGGACTAGGTCCAAC
CGTGTTAAAGGGAGCCGTGAATAATTGCATCCGATTCTCAACTTTTTCAG
AACTCAAGTATATTTACCAGAAATACAAACTAAATGTTGCAGATAACAGA
TTAACGGCTACGTTTGAGAACTTCTCAACCTGCCCGGAAAGCGACCATTT
TCAGGCGGTCCACGAAGCTATTTTGAATCCACTGGAAACAATGTTGCTGG
GCGCTACATCAGGAGGACTTTCCGCAATCGCAACGCATCCTATCGACACA
GTTAAATCAAACATGCAGTCGTTGAGTGCTGACAAGTATACATCATCTTG
GAATTGTTTTCTGTCTATCTTACGCAACCAAGGTCTTCCTGGGCTTTATC
AGGGTATGGCTCCCCGATTTGTCCGTGTTTCTCTTGAGATTGGCCTACAC
TTTTCGCTCTATGAACAAATAGCTTGTCGTATTGACGAAAGCTTGTTCAA
TTAAATGCCCTTACACCTGTGTTTGCCGGGGGTTTGGCAGGCTGTACGTA
CCAATGCAATCCATTGCCAGCTTAAACAGCACTATGCACTCAATGCCTTT
ACGGGACCTTTGGACTGTGTACGCTTCACCCTAAGAACTAAAGGCCCTCT
AGGTTTATACAAAGGTCTCACACCATGGCTGGTATTTGCTTTCCCACGGT
CCGCTGTCCGATTTTCAACCTATGAGTTCGTTAGTCAACGATTTCGGGAA
ACCGTCTCGAAAGAAAGCCAAGAAGGCGAATTGCAGAACGGGAAACTTGA
TCCATATCTCAGTATGGCAGCAGGATCCATCGCTGGTGCAGTGGAATTCC
TGACTGTTGGAACACCTATGCAATGCATCCAAGTCAAGATGGCGCATGAT
GCCTACTCTAAGGTTCCACGATTTCACGGCTTTGTTAGTGCAATAGTAGG
AATCGTTCGGGCAGAAGGTCTTTTGAAAGGGCTGTATGCAGGACTAGGTC
CAACCGTGTTAAAGGGAGCCGTGAATAATTGCATCCGATTCTCAACTTTT
TCAGAACTCAAGTATATTTACCAGAAATACAAACTAAATGTTGCAGATAA
CAGATTAACGGCTACGTTTGAGAACTTCTCAACCTGCCCGGAAAGCGACC
ATTTTCAGGCGGTCCACGAAGCTATTTTGAATCCACTGGAAACAATGTTG
CTGGGCGCTACATCAGGAGGACTTTCCGCAATCGCAACGCATCCTATCGA
CACAGTTAAATCAAACATGCAGTCGTTGAGTGCTGACAAGTATACATCAT
CTTGGAATTGTTTTCTGTCTATCTTACGCAACCAAGGTCTTCCTGGGCTT
TATCAGGGTATGGCTCCCCGATTTGTCCGTGTTTCTCTTGAGATTGGCCT
ACACTTTTCGCTCTATGAACAAATAGCTTGTCGTATTGACGAAAGCTTGT
TCAATTAAATGCCCTTACACCTGTGTTTGCCGGGGGTTTGGCAGGCTGTA
CGTACCAATGCAATCCATTGCCAGCTTAAACAGCACTATGCACTCAATGC
CTTTACGGGACCTTTGGACTGTGTACGCTTCACCCTAAGAACTAAAGGCC
CTCTAGGTTTATACAAAGGTCTCACACCATGGCTGGTATTTGCTTTCCCA
CGGTCCGCTGTCCGATTTTCAACCTATGAGTTCGTTAGTCAACGATTTCG
GGAAACCGTCTCGAAAGAAAGCCAAGAAGGCGAATTGCAGAACGGGAAAC
TTGATCCATATCTCAGTATGGCAGCAGGATCCATCGCTGGTGCAGTGGAA
TTCCTGACTGTTGGAACACCTATGCAATGCATCCAAGTCAAGATGGCGCA
TGATGCCTACTCTAAGGTTCCACGATTTCACGGCTTTGTTAGTGCAATAG
TAGGAATCGTTCGGGCAGAAGGTCTTTTGAAAGGGCTGTATGCAGGACTA
GGTCCAACCGTGTTAAAGGGAGCCGTGAATAATTGCATCCGATTCTCAAC
TTTTTCAGAACTCAAGTATATTTACCAGAAATACAAACTAAATGTTGCAG
ATAACAGATTAACGGCTACGTTTGAGAACTTCTCAACCTGCCCGGAAAGC
GACCATTTTCAGGCGGTCCACGAAGCTATTTTGAATCCACTGGAAACAAT
GTTGCTGGGCGCTACATCAGGAGGACTTTCCGCAATCGCAACGCATCCTA
TCGACACAGTTAAATCAAACATGCAGTCGTTGAGTGCTGACAAGTATACA
TCATCTTGGAATTGTTTTCTGTCTATCTTACGCAACCAAGGTCTTCCTGG
GCTTTATCAGGGTATGGCTCCCCGATTTGTCCGTGTTTCTCTTGAGATTG
GCCTACACTTTTCGCTCTATGAACAAATAGCTTGTCGTATTGACGAAAGC
TTGTTCAATTAA

Synonyms

Publications