rna7526, rna7526 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7526
Unique Name	rna7526
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1929
Alignment location	CM002472.1:164428..167383 -

Link to JBrowse

Properties


Property Name	Value
Product	beta-1,3-glucan-binding protein
Orig transcript id	gnl\|cribi\|Naga_100043g13.7219.mrna
Orig protein id	gnl\|cribi\|Naga_100043g13.7219
Gene	gp40-2
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002472.1	supercontig	CM002472.1:164428..167383 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gp40-2	gene7286	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23136.1	cds7508	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7526	rna7526-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002472.1:164428..167383-
coding sequence from alignment at CM002472.1:164428..167383-

mRNA sequence

>rna7526 ID=rna7526|Name=rna7526|organism=Nannochloropsis gaditana|type=mRNA|length=1929bp
CTCGATACCGACGAAGCCGGGGGTCGATTTGTACTTTTCTAATGCTGTGA
CCGGAGTGCTGAAGAAAGGCAATCGTCTCAACCACAATATTCTTTTTGCT
CTGGAAGGCAGTGTGTGATCGAATCATCCCTAAGATAATTCTCTCCCCTT
CCCTATTTCCGGCAGGGCCCAGATTCCATTCGTAGGGCCGCTTGTACACC
ACGCCTTTCGTTTTAACTGATCAAGGGATGATATAGCCATTTTAAATTGA
AATACCATGGAACGTCATAATCCCAATCAATCTATCATCGATGCGCCCCA
TCAAGGCGCAGTGGAATATTCACCGTTGCATCCTCAAATGTACGGCATGA
CCCCAGGACAAGCACTTGTATCCCCATTTGGTCCCATTCAAACCATGTCG
TCTTCCGCTTTACCGCACCTCTGGCCCTCAGATGCACACATGCGACAGTT
TGGAAATTACCCCCCGATCCATATGGGGCCGCTCGAGTACAGCGAAGCTG
TAGACAGAGATATAGAAGAGACGTTGGAGGATCTTCTGGGTCCCTTTCCA
GCCCTACGACTCCGAGGCCTGCCTTTCGACGCGGGAGTCCGGGACGTCAT
CACCTTTTTCCATGGAATGGGAGTACTGGACGTGGTGATGACAAGCAAGG
GCGAATGCATTGTACTTTTTAACACCCTCATGGATATGCAACTGGGTCTA
GGCAAAGACACACAAAACATGGGGAGGAGATACATAGAAATTTTCGTGGC
CAAGCGTGTTGACTACTACCACGCGGTACGCCAACGCACAGAGGAAGGTT
ATTACCGCAGATTACACTTCCGTGGAGATGTCCACGGCTTTGCCTGGCGA
ACGATGAGAAGTCAAGAAGGGTCTTTCCACGACTTCAACGCTGCCCTGTT
CTACTCCAATCAGCCGTATCAACATCCACAAGCACACCTCCAAGCGCACA
CCCTGCATCGGGCATTACAGATGACTCCATACCAACAGCCATCATACCAG
ACTGTTCCCGGCGCGGGCCTCGGTCCTGCTACTACTGGCCTTGCAGATAC
CGAAAGACAGGGGGAGACAGGGAAGCTCGCTGCACGCCAGGGGCAAAACG
TTGCTGCACCTACTATTCCTCGTGAGGTTGCCATTGCTGCGACAGAGAGG
GCACAAAATTCCGGCATCCTGAAGCTTCGCGGACTTCCTTTCACATGCAG
TAGCACCGACATTCGAGATTTTTTCGAAGGTTTCACCGTGCTTTCGGACG
ACATCCAACTCATCTTGCGCGCCGATGGCCGCTTGACGGGTGAGGCCTTC
GTCTCATTCTCAAGTGTGGAAGATGCCCGTTCTGCCCAACAAAGTAAGGA
CCGATCCATGCTCGGAACCAGATACGTGGAACTCTTCCACACCACGCCTG
AAGAGCTTGCGCGTGCACTTAATGGGCAGCAGCACATCGCCGGATCCTCT
GCTGTATGTATCGGAAGCAGTAGCGCAAAAACTAGTGAAAGCGCAGACAG
TGAAATAAGTACGAGTGGTAGAGGGGAGGCATTGACCACGTTGGAGGCCT
GACTTGGTGTTGTGCGCAATTTTGCAACATAGCGCCAACAGATCGCAGCA
CTCGGAAAAATGCACACAGTCCAGAAAAATCAGATAGAACTACATCAGAT
CTGATAACGAGCGGCAAATTGATACTTGTGCATTGATATGCAATGAAAAA
GTACAAGATCCTGTTTAAGACGTCGATCACTGTATATCGTATGACAGCAC
CGTAGGTAATTCCTCGACGATGACAGTTGTCACCAGAAAGACGATTGCTG
CGAATCCAGAAATTTATGTCTGAGGCTTTTTTATTAAGAGCTCGACATAT
AAAAGGAAGGTTAGATTAAGTAGTATCAGTCTTTTTGGATCGCATCGCAC
GCGAAAATTAAAAAACACAGTGAACTTTG

protein sequence of rna7526

>rna7526-protein ID=rna7526-protein|Name=rna7526|organism=Nannochloropsis gaditana|type=polypeptide|length=520bp
MKDLGGVGENGGGRGGEGLLAPLSKKSVGDRAVDGESEGDRAVEGAEAEV
LVFEDTFEELDMEIWAHDITMAGGGNWEFQYYTNNRSNSFVEEGVLYLQP
TLTEETIGEANMMGEKPFRFDMWGMWPSDACTSNAFYGCERISDAGAQLV
INPVQSARLRTTGTFTFQYGRLEVEAKLPRGDWLWPAIWLLPEKNVYGQW
PASGEIDVMESRGNKPGYVKGGYDSFGSCMHWGPYFALDKYEMTCESFTL
PEGKGTFNDDFHVFGMVWNEQGLYTYLDREDQKVLEVKFDRPFFERGDFA
DVPGTGNPWIGRPNAAPFDQPFYLVLNVAVGGLSNFFEDGEDGKPWTNTG
KGAPYLFAKAKDEWYPSWAGRDSALQVKSVRVWQKPGQGKASVLGEKPRE
GAGVGGAGNDAVLAPSSAPRKGHDSHQNNDSHQNKPLSGVDTSKRRGSTG
GWIFGSLLALVLAGAGVAYGVYLRMGGFPGTGNRVGGGRGGQAYTSVVGG
SVAPYQATSYSDATRSTHHI

mRNA from alignment at CM002472.1:164428..167383-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7526 ID=rna7526|Name=rna7526|organism=Nannochloropsis gaditana|type=mRNA|length=2956bp|location=Sequence derived from alignment at CM002472.1:164428..167383- (Nannochloropsis gaditana)
GGAATCGAAGGATACGGCCAACACAATGTTCGAAATTGCCATGCCCGCCA
TCTTTAATCCGGGGTTTACTGAATAATGCCCGTCACACTGAACGTGCTTC
TTCTAACTCCAGTTGTCCGAGGTATTCAACGGTCTCAAAGCAGGCATTCG
CCCGTAGGATCACTCTTCGTCGTCAGATCAGAGCAAGTCGACCTTTACAA
GTGATAACATTTGAAAAGAAGCTGCCTTCCGCGGGACTTGGTAACAAGCG
GTGTACCTGGGTCTAGCCGTCGCTTTGGCTCCTGGCGATCAGCCGAGAGG
CGAGCAGGAGCAAGAACAAAGCAAACGTGCGATTGCAACAAGCGGCCCTA
AAAACAATAATCATGCGAACTTATCAGAGAAGGAAGAGTGTACAAATTGA
TTCTTTGGTAGGGAACTCCCAGCACGATTGTTACGGTGTCCGCCTTTCCA
GTCCCGCTTTGTCTTCGTGTAAAACTCTCACTTGGGACCTTCATGCTTTA
CGAATACCAGCCCCCGCAAATTAGAAACATTAAACGGTTTGCAAAGGTTG
CAAGATATGGGAGTGAGCTATGGCGGTAGACTTATCCTCTTCGCACTCCT
TGCGGGAGTCACTCTTCCAACGGCTACCTGCTCAGCTTGCGATCGTCCTA
GGTGAGCTTGCTATGAGATGAAATAATGGAATGTAAACGTCATTGATAAT
GCTTTTCTCCGTCAATAATCTTATCAGGCCATCAACCTCGGATGTAAACC
GAGCTGCCACAATTGAAAGGAGGCTTCAAGCGCTGGAGCAATGGCGCATT
GAGGTAAAGCTCACTAAACCATGAAGGCCAGCCTCATACCTCTCGAAATC
TCCAGGAGGTTGTTACTCAGCGGTCTCCGCCTCACGATGCTATATATTCA
CACATACGTTTTTAAGATCGAGAAGCCGAGACGGTTCCGCGCCTTGTGGC
GTGTCTGACTTTGCATATGTCCATTTTCCGTCTCCATCACTTGCACGAGC
ACACAGTTGGCGGAGCGCGAGGCTGTAGTGCAAGCGCGGGAAGAAAATCT
CGGTATGAAAGATTTAGGCGGTGTGGGTGAAAATGGAGGAGGTCGAGGAG
GTGAAGGCTTGTTGGCTCCGCTTTCAAAAAAGAGCGTGGGGGATAGGGCG
GTGGACGGGGAGAGCGAGGGGGATAGGGCGGTGGAAGGGGCTGAAGCGGA
AGTGTTGGTGTTCGAGGACACATTCGAGGAGCTGGATATGGAGATATGGG
CACATGACATCACCATGGCGGGTGGTGGAAATTGGGAATTCCAGTACTAC
ACGAACAATCGCAGCAACAGCTTTGTCGAGGAAGGCGTGCTCTACCTGCA
GCCAACGCTCACGGAGGAGACCATCGGGGAGGCGAACATGATGGGTGAGA
AGCCGTTTCGTTTCGACATGTGGGGCATGTGGCCCTCTGATGCATGCACG
TCCAACGCGTTCTATGGCTGCGAACGCATATCCGACGCCGGGGCGCAGCT
GGTCATCAACCCGGTGCAGTCAGCGCGCCTCCGGACCACAGGCACCTTCA
CCTTCCAGTACGGGCGCCTGGAGGTGGAGGCCAAGCTGCCACGAGGAGAC
TGGCTCTGGCCCGCCATCTGGCTGCTGCCTGAGAAGAATGTGTATGGACA
GTGGCCTGCGTCGGGGGAGATTGACGTGATGGAGTCGCGGGGGAACAAGC
CTGGGTATGTGAAAGGCGGCTACGACTCCTTCGGTAGCTGCATGCATTGG
GGACCCTATTTCGCGCTCGACAAGTACGAGATGACTTGCGAGAGCTTCAC
TTTACCGGAGGGCAAAGGTACTTTTAACGACGACTTTCACGTCTTCGGCA
TGGTGTGGAACGAGCAGGGGCTCTACACCTACCTTGACAGAGAAGACCAG
AAGGTCCTTGAGGTCAAGTTCGACCGCCCATTCTTCGAGCGTGGCGACTT
CGCTGACGTACCGGGCACGGGCAATCCCTGGATCGGCCGGCCGAATGCGG
CTCCTTTCGACCAACCATTCTACCTGGTCCTCAACGTGGCCGTGGGCGGA
CTAAGCAACTTTTTCGAGGACGGCGAGGACGGAAAGCCGTGGACTAATAC
GGGCAAGGGGGCCCCCTACCTCTTTGCCAAAGCAAAAGATGAATGGTATC
CGAGCTGGGCTGGCAGAGACTCTGCTTTGCAGGTCAAGTCCGTCCGTGTC
TGGCAGAAGCCCGGCCAGGGCAAGGCCTCCGTCCTAGGCGAGAAACCCCG
AGAAGGCGCGGGTGTGGGTGGCGCGGGCAATGACGCTGTCCTCGCCCCGT
CGTCGGCCCCTCGCAAAGGTCACGATAGCCATCAAAATAACGATAGCCAT
CAAAATAAGCCTTTGAGCGGTGTAGACACTTCAAAACGCAGGGGCTCGAC
CGGTGGCTGGATATTTGGGTCTCTCCTGGCGCTGGTCTTGGCTGGTGCGG
GCGTGGCTTACGGCGTATATCTCCGCATGGGTGGGTTCCCAGGGACTGGT
AACCGAGTGGGCGGAGGAAGGGGAGGGCAAGCGTACACGAGCGTGGTAGG
AGGGTCTGTTGCACCCTACCAAGCCACTTCTTACTCCGATGCAACAAGGT
CAACGCACCACATATGAGCTGTGCATGAAAGTCGACGATCCATGACCGCT
TGTAGCAAGGTCAAAGTTTCAACCCACGGTCACTTGAAGCCACGTGGAAA
GGAGCACTGCAATGGTAGAATGCACAGCACGATTCTACGTAAAAAGAAAG
AATGATAATCATAAGAACAATTTCCGGTAAACCGCACGGGAGCACTAGGT
TTTCCGGGGGCTCGGAAAGTGTGGAATGGACGTAAAAGGCGGCATGCATC
ATGTCGTTGGTCACGGTGCCCTTCAAAATTAACTTTGAATGACATCTCTC
ACAACATGCGCCACACTCCTTTCAGTGTTAATCGTGTTATATGTCTTTTC
TCACCG

Coding sequence (CDS) from alignment at CM002472.1:164428..167383-

>rna7526 ID=rna7526|Name=rna7526|organism=Nannochloropsis gaditana|type=CDS|length=1563bp|location=Sequence derived from alignment at CM002472.1:164428..167383- (Nannochloropsis gaditana)
ATGAAAGATTTAGGCGGTGTGGGTGAAAATGGAGGAGGTCGAGGAGGTGA
AGGCTTGTTGGCTCCGCTTTCAAAAAAGAGCGTGGGGGATAGGGCGGTGG
ACGGGGAGAGCGAGGGGGATAGGGCGGTGGAAGGGGCTGAAGCGGAAGTG
TTGGTGTTCGAGGACACATTCGAGGAGCTGGATATGGAGATATGGGCACA
TGACATCACCATGGCGGGTGGTGGAAATTGGGAATTCCAGTACTACACGA
ACAATCGCAGCAACAGCTTTGTCGAGGAAGGCGTGCTCTACCTGCAGCCA
ACGCTCACGGAGGAGACCATCGGGGAGGCGAACATGATGGGTGAGAAGCC
GTTTCGTTTCGACATGTGGGGCATGTGGCCCTCTGATGCATGCACGTCCA
ACGCGTTCTATGGCTGCGAACGCATATCCGACGCCGGGGCGCAGCTGGTC
ATCAACCCGGTGCAGTCAGCGCGCCTCCGGACCACAGGCACCTTCACCTT
CCAGTACGGGCGCCTGGAGGTGGAGGCCAAGCTGCCACGAGGAGACTGGC
TCTGGCCCGCCATCTGGCTGCTGCCTGAGAAGAATGTGTATGGACAGTGG
CCTGCGTCGGGGGAGATTGACGTGATGGAGTCGCGGGGGAACAAGCCTGG
GTATGTGAAAGGCGGCTACGACTCCTTCGGTAGCTGCATGCATTGGGGAC
CCTATTTCGCGCTCGACAAGTACGAGATGACTTGCGAGAGCTTCACTTTA
CCGGAGGGCAAAGGTACTTTTAACGACGACTTTCACGTCTTCGGCATGGT
GTGGAACGAGCAGGGGCTCTACACCTACCTTGACAGAGAAGACCAGAAGG
TCCTTGAGGTCAAGTTCGACCGCCCATTCTTCGAGCGTGGCGACTTCGCT
GACGTACCGGGCACGGGCAATCCCTGGATCGGCCGGCCGAATGCGGCTCC
TTTCGACCAACCATTCTACCTGGTCCTCAACGTGGCCGTGGGCGGACTAA
GCAACTTTTTCGAGGACGGCGAGGACGGAAAGCCGTGGACTAATACGGGC
AAGGGGGCCCCCTACCTCTTTGCCAAAGCAAAAGATGAATGGTATCCGAG
CTGGGCTGGCAGAGACTCTGCTTTGCAGGTCAAGTCCGTCCGTGTCTGGC
AGAAGCCCGGCCAGGGCAAGGCCTCCGTCCTAGGCGAGAAACCCCGAGAA
GGCGCGGGTGTGGGTGGCGCGGGCAATGACGCTGTCCTCGCCCCGTCGTC
GGCCCCTCGCAAAGGTCACGATAGCCATCAAAATAACGATAGCCATCAAA
ATAAGCCTTTGAGCGGTGTAGACACTTCAAAACGCAGGGGCTCGACCGGT
GGCTGGATATTTGGGTCTCTCCTGGCGCTGGTCTTGGCTGGTGCGGGCGT
GGCTTACGGCGTATATCTCCGCATGGGTGGGTTCCCAGGGACTGGTAACC
GAGTGGGCGGAGGAAGGGGAGGGCAAGCGTACACGAGCGTGGTAGGAGGG
TCTGTTGCACCCTACCAAGCCACTTCTTACTCCGATGCAACAAGGTCAAC
GCACCACATATGA

Synonyms

Publications