rna7524, rna7524 (mRNA) Nannochloropsis gaditana

Overview
Namerna7524
Unique Namerna7524
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length477
Alignment locationCM002472.1:159904..160275 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100043g11.7253.mrna
Orig protein idgnl|cribi|Naga_100043g11.7253
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:159904..160275 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100043g11gene7284Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7524rna7524-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23170.1cds7506Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7524 ID=rna7524|Name=rna7524|organism=Nannochloropsis gaditana|type=mRNA|length=477bp
ATGTTACTACCATGCTCGAGCACCAAGTGTGGTCTGAGCTGGTCCTCATC
GGAAACAAACCCCTCTGGCTCCAGCACCTCGGTCACCCTGAGACCGCGAT
CCATCCCACCGTCCGCGCTGCCCTCCCCATCCTCCTCCTCCTCATTCTGC
CCTGTCTCCTCCTCAACATCAGTCGACCCCTCTCTTTCGTCAGGCCAGCA
ATTCCTTGACGCCCCTGCAACCTCCTCCTGTTGTGACGGCGTGTGTCGTG
TGAGGAGTCATGAGTTTGTCGGGTGCTGCCAAGGACGGGATTTGAAGAGG
TCAACCTTCTATCATAAAGTCTCACCCCGAGTGGTCGATGGCCGCGCCCA
CGCCGTTGATGAACGCAAACAGCACATGGAAGTGCCAAGGAAGAGGGTTG
AAGAGCTGAGCGAAGAGGAAGACGCCAAACACTTCCATGAGTACGAACTC
AAGAATGCTGTCCTGCCAGGCGGATAG
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protein sequence of rna7524

>rna7524-protein ID=rna7524-protein|Name=rna7524|organism=Nannochloropsis gaditana|type=polypeptide|length=123bp
MKSTVSRWLTIKVRHTTHENHKARSIAGDETRFDTPSFPFPPSPPLLRPC
QSVEAWLTSFLHTARPEIESNQSCNKLRAVSKPMGLATQPAGITGTPLPP
PETPAYLSYACGRRLVSAWQGSI
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mRNA from alignment at CM002472.1:159904..160275+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7524 ID=rna7524|Name=rna7524|organism=Nannochloropsis gaditana|type=mRNA|length=372bp|location=Sequence derived from alignment at CM002472.1:159904..160275+ (Nannochloropsis gaditana)
ATGAAGAGCACCGTCAGCAGATGGCTCACGATCAAAGTAAGACATACAAC
CCACGAGAACCACAAGGCTCGATCCATAGCTGGTGATGAAACGAGATTCG
ACACCccttcgtttccttttcctccgtcacctccactCCTTCGGCCCTGC
CAGTCCGTAGAAGCTTGGCTGACGTCGTTTCTCCACACCGCGAGACCAGA
GATAGAGAGCAACCAAAGCTGCAATAAATTACGCGCTGTGTCCAAACCCA
TGGGTCTGGCAACCCAGCCAGCTGGGATAACTGGaactccccttccccct
ccagagACGCCTGCCTACCTGTCATATGCATGCGGACGGAGGCTGGTGAG
TGCGTGGCAAGGGTCTATTTGA
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Coding sequence (CDS) from alignment at CM002472.1:159904..160275+

>rna7524 ID=rna7524|Name=rna7524|organism=Nannochloropsis gaditana|type=CDS|length=372bp|location=Sequence derived from alignment at CM002472.1:159904..160275+ (Nannochloropsis gaditana)
ATGAAGAGCACCGTCAGCAGATGGCTCACGATCAAAGTAAGACATACAAC
CCACGAGAACCACAAGGCTCGATCCATAGCTGGTGATGAAACGAGATTCG
ACACCccttcgtttccttttcctccgtcacctccactCCTTCGGCCCTGC
CAGTCCGTAGAAGCTTGGCTGACGTCGTTTCTCCACACCGCGAGACCAGA
GATAGAGAGCAACCAAAGCTGCAATAAATTACGCGCTGTGTCCAAACCCA
TGGGTCTGGCAACCCAGCCAGCTGGGATAACTGGaactccccttccccct
ccagagACGCCTGCCTACCTGTCATATGCATGCGGACGGAGGCTGGTGAG
TGCGTGGCAAGGGTCTATTTGA
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Synonyms
Publications