rna7517, rna7517 (mRNA) Nannochloropsis gaditana

Overview
Namerna7517
Unique Namerna7517
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1320
Alignment locationCM002472.1:145927..147759 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100043g3.7239.mrna
Orig protein idgnl|cribi|Naga_100043g3.7239
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:145927..147759 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100043g3gene7278Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7517rna7517-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23156.1cds7499Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7517 ID=rna7517|Name=rna7517|organism=Nannochloropsis gaditana|type=mRNA|length=1320bp
ATGCGGCTAAGATGCCTCGTAGCTCTAGGCATACGCTTGAGTTTGGCCGT
GGGATTCGTCTACCCCCCGACTCATGGCGGCGCGTTCGGGAGGTACAGCC
CCAGCGAGGAGATGCCCGGCAATGTAAAATATCGTGCAGAAAGAGCACGG
TACCCAATCAACACCTTCATCTCAAGCCAAATTTCTAGCCATGAAGCCTT
GCACTTGCAGGAAATGTCTAGAAACTCTCCAGAGGGCGTGTTTCTGGATT
TAACTTCCTGCGGCTGGGGCCTACTTAGCGTGTCAGGAGAGGATAGGCTG
CGCTTTTTGCACAATCAACTCACGAATTCGTTCGCAAACGCACAAGTCGG
TGATGTTATAGAATCATCTTATACGTCTTCCGTGGGAAGAGCCATAGACT
TGGTGACTGCGTACGTACTGGAGGATGAGGTCCTGCTTCTGTCCTCACCA
CCACGGCACGCGCACGTCTTCGAGTCCTTCCACAAGTATATCTTCCCCTT
AGACAGGGTCCAGGTACACAAGAAGGAATTGCAGGGTTTTTTCATATACA
TGGGCCCAGAGGCGGCCTTGACGAAGCTCTCCAATCTGTTGGAACACAAG
GTCCCGCCTCCACAAGCTCATCGTTGCCATACCTTACCTTCAGGCCTGGT
GGTGGCCGAGGGGTCTGGCCTGGCCCTTCCTGGCCTCACCATGCTCGACG
TGAGCGGTTCCTCGGGCGTGGCGGCCGCCGTCTCCAGCGCGGGCGTTCGT
CTGGGGGGTGGAAAGGAGTGGGAGGCTCTCCGCATCCTGCAAGGGAGGCC
GTTTCCCGAAAAGGAACTAACGCTGGAGGTCACGCCGTTGGAGGCGGGGT
TGTGGCACACCGTGGATCCCGAGAAGGGGTGCTACCTGGGACAGGAGACT
CTGGCCAAGCAGGCCAACAACAAGGGGGAGCGGCAGAGACTCTTCGCCGT
GAGAGGAAAGGGCTTAGAGGAGAAGCAACGGATCCTGGACTCGGCGGGTG
GTCGGTCCGGGGTCGTGACCTCCTGTCTGGGCGATGAGGGGCGCGCGGGT
CTGGCCTATATTCGGAAGACGGTGGCCCACCCCACCAGAGCCAGCTTGTT
CAACGAGGGAGGGACCGAGCCGCTGCAAGTCTCGGACATTCCCTACGCGA
CAAGGGAGGCGACCACAAAGAAACAAGGCTCGACAGTGACACAGGAGATT
GGACAGGCTGCGGAAAATACAAGTGCTGCGGACAAAGCTGTCGAGGCGGG
ACGTAAAGCTAAGAAGCTAGAGGAGATGAAAAAACGTCTTGAAGAATTTC
AGAGAAAAAATAAAAAGTAA
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protein sequence of rna7517

>rna7517-protein ID=rna7517-protein|Name=rna7517|organism=Nannochloropsis gaditana|type=polypeptide|length=309bp
MTTKDHRRPQDFGCEQHDRKRWRPSAVAALSLGALFLFLNSAPTSAFVIK
CRPRRSILQKENALLLCGFTLESISSSRCLGVRGGRRKAQGVLPAISQGE
DGAEKSREGKKAASGGKKASGPKSKRGASSSKSSPPPMPSSATSSSADSG
KPSAAPQKVQKGKRKVKEQVPAPFFDEALLDGSRARDVYTGEQKFNLMGQ
SEDVIAPWSVDGFEIDLPDWRPQPAQRYRIVDPAVMEQLGKIENMFGASL
RLVSTEDGIWRFLYSGNVRNLIGAEAWTKLLLIEDLKIAGVREVRFETNY
VRDWPDDHN
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mRNA from alignment at CM002472.1:145927..147759-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7517 ID=rna7517|Name=rna7517|organism=Nannochloropsis gaditana|type=mRNA|length=1833bp|location=Sequence derived from alignment at CM002472.1:145927..147759- (Nannochloropsis gaditana)
GCGCCAGTTGAATCGCGACAACTCACCTCCATTCTAAGACTTACCTTCTC
TCGCATCTTGTTTTGATAGATTGCATAGCCGCATGACGACAAAGGATCAC
CGAAGACCTCAAGACTTTGGGTGCGAGCAGCACGACAGGAAGAGATGGCG
TCCGTCAGCGGTGGCTGCACTATCTTTAGGTAAGTCATAGCGCAGACCTA
TCCTATCCTAACGCAGGATTTATCTTCCGCAGAGGCATGAAAAACATTGA
GATACGTTGAGTCATTTTTCGGAACATTGTGTAATCGAGGGAATTGGTCG
GGGCGTTAAGGCACGTCCGTGTCCGCAGACTATCGTATTCTTCCAGTCCC
CATGCGCGATCACGGTCACCCAGTTGCGCACGCAGGGAATTTTGACAGAT
TGATTGCATGTTGTAGGACACATACGAGTACGTTTATGTCCCAAAACATT
ATCTTGAACAACTCGGAAACCACAGGAGCTCTGTTCCTGTTTCTTAATTC
AGCGCCCACGTCCGCATTTGTAATAAAATGTAGGCCAAGAAGAAGCATTC
TTCAGAAGGAAAACGCTTTACTTTTGTGTGGGTTCACTCTCGAGAGCATC
AGCAGTAGTAGATGTTTAGGTGTTAGGGGGGGACGGAGGAAGGCGCAAGG
CGTTTTACCGGCAATTTCTCAAGGGGAAGATGGCGCGGAGAAAAGCAGAG
AGGGAAAAAAAGCGGCATCTGGAGGAAAGAAAGCTTCGGGGCCCAAGAGT
AAGCGAGGAGCAAGCAGCAGCAAGTCCAGTCCTCCTCCCATGCCGTCCTC
TGCCACCTCCTCATCGGCAGACTCAGGCAAACCATCCGCGGCCCCCCAAA
AGGTACAGAAAGGGAAGCGGAAAGTCAAAGAGCAGGTCCCGGCTCCCTTC
TTCGACGAAGCGCTTTTGGACGGGTCTCGGGCGAGAGATGTATACACTGG
AGAGCAGAAATTCAACCTGATGGGTCAGAGCGAGGACGTGATAGCGCCCT
GGAGCGTTGATGGCTTCGAGATCGACCTGCCCGACTGGCGCCCCCAGCCT
GCGCAGCGCTACCGCATCGTGGATCCCGCCGTCATGGAGCAGCTTGGGAA
GATCGAGAATATGTTCGGGGCGTCCTTGCGTCTGGTCTCCACCGAGGACG
GGATCTGGCGTTTCCTGTACAGTGGAAACGTCAGGAACCTGATCGGAGCC
GAGGCCTGGACGAAGCTGTTGCTCATCGAGGACTTGAAGATAGCGGGGGT
GAGGGAAGTGCGCTTCGAGACAAACTATGTGCGTGACTGGCCGGATGATC
ATAACTAGAAAGGGATGGCGGGGAGTGCACGGGCGGGGTTCGTGTTGATT
TTGGGATGAGATCACCATCAAATACGGCGCGAATAGGGAGGGAGCCGTGC
ATCTTGCAGCAGGGACTTTAAAAAAAAAGTATGATATTAACGAATTAGAT
GCGAGAAGATTAATCTGGTATCGCCTCGGAGCATAGTGGCCGAGTAGGGC
ATTGCTTGATAGGGGATACATCATGTAGTGTTCTTCGCCGACTCTTTGAT
CATGTTTCGCCCGATTACTGCGCTCTGTGGTCGGTCACGAGCCACACGAT
GGCGTGATATATTTCCAAAGCCTCTGATTTCATAAAGCGAAAGAGTAGGT
CTGGAATGGGCAGCACTGGGTGTCTGGCCCCAGTCCACACGTCTTACAAA
TCCGGCTGACCCGAGAGCCCGCGACATGATGGCGAGCAGCAATTTATGCT
TTGAAAGTGAAGAAGTGATCTTTTGACAATAAATGCTCATCTGAAATAAC
CACGTCAGTCCCAAACTCAAAACACAAGATTTC
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Coding sequence (CDS) from alignment at CM002472.1:145927..147759-

>rna7517 ID=rna7517|Name=rna7517|organism=Nannochloropsis gaditana|type=CDS|length=1860bp|location=Sequence derived from alignment at CM002472.1:145927..147759- (Nannochloropsis gaditana)
GAGCTCTGTTCCTGTTTCTTAATTCAGCGCCCACGTCCGCATTTGTAATA
AAATGTAGGCCAAGAAGAAGCATTCTTCAGAAGGAAAACGCTTTACTTTT
GTGTGGGTTCACTCTCGAGAGCATCAGCAGTAGTAGATGTTTAGGTGTTA
GGGGGGGACGGAGGAAGGCGCAAGGCGTTTTACCGGCAATTTCTCAAGGG
GAAGATGGCGCGGAGAAAAGCAGAGAGGGAAAAAAAGCGGCATCTGGAGG
AAAGAAAGCTTCGGGGCCCAAGAGTAAGCGAGGAGCAAGCAGCAGCAAGT
CCAGTCCTCCTCCCATGCCGTCCTCTGCCACCTCCTCATCGGCAGACTCA
GGCAAACCATCCGCGGCCCCCCAAAAGGTACAGAAAGGGAAGCGGAAAGT
CAAAGAGCAGGTCCCGGCTCCCTTCTTCGACGAAGCGCTTTTGGACGGGT
CTCGGGCGAGAGATGTATACACTGGAGAGCAGAAATTCAACCTGATGGGT
CAGAGCGAGGACGTGATAGCGCCCTGGAGCGTTGATGGCTTCGAGATCGA
CCTGCCCGACTGGCGCCCCCAGCCTGCGCAGCGCTACCGCATCGTGGATC
CCGCCGTCATGGAGCAGCTTGGGAAGATCGAGAATATGTTCGGGGCGTCC
TTGCGTCTGGTCTCCACCGAGGACGGGATCTGGCGTTTCCTGTACAGTGG
AAACGTCAGGAACCTGATCGGAGCCGAGGCCTGGACGAAGCTGTTGCTCA
TCGAGGACTTGAAGATAGCGGGGGTGAGGGAAGTGCGCTTCGAGACAAAC
TATGTGCGTGACTGGCCGGATGATCATAACTAGATGACGACAAAGGATCA
CCGAAGACCTCAAGACTTTGGGTGCGAGCAGCACGACAGGAAGAGATGGC
GTCCGTCAGCGGTGGCTGCACTATCTTTAGGAGCTCTGTTCCTGTTTCTT
AATTCAGCGCCCACGTCCGCATTTGTAATAAAATGTAGGCCAAGAAGAAG
CATTCTTCAGAAGGAAAACGCTTTACTTTTGTGTGGGTTCACTCTCGAGA
GCATCAGCAGTAGTAGATGTTTAGGTGTTAGGGGGGGACGGAGGAAGGCG
CAAGGCGTTTTACCGGCAATTTCTCAAGGGGAAGATGGCGCGGAGAAAAG
CAGAGAGGGAAAAAAAGCGGCATCTGGAGGAAAGAAAGCTTCGGGGCCCA
AGAGTAAGCGAGGAGCAAGCAGCAGCAAGTCCAGTCCTCCTCCCATGCCG
TCCTCTGCCACCTCCTCATCGGCAGACTCAGGCAAACCATCCGCGGCCCC
CCAAAAGGTACAGAAAGGGAAGCGGAAAGTCAAAGAGCAGGTCCCGGCTC
CCTTCTTCGACGAAGCGCTTTTGGACGGGTCTCGGGCGAGAGATGTATAC
ACTGGAGAGCAGAAATTCAACCTGATGGGTCAGAGCGAGGACGTGATAGC
GCCCTGGAGCGTTGATGGCTTCGAGATCGACCTGCCCGACTGGCGCCCCC
AGCCTGCGCAGCGCTACCGCATCGTGGATCCCGCCGTCATGGAGCAGCTT
GGGAAGATCGAGAATATGTTCGGGGCGTCCTTGCGTCTGGTCTCCACCGA
GGACGGGATCTGGCGTTTCCTGTACAGTGGAAACGTCAGGAACCTGATCG
GAGCCGAGGCCTGGACGAAGCTGTTGCTCATCGAGGACTTGAAGATAGCG
GGGGTGAGGGAAGTGCGCTTCGAGACAAACTATGTGCGTGACTGGCCGGA
TGATCATAACTAGATGACGACAAAGGATCACCGAAGACCTCAAGACTTTG
GGTGCGAGCAGCACGACAGGAAGAGATGGCGTCCGTCAGCGGTGGCTGCA
CTATCTTTAG
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Synonyms
Publications