rna7516, rna7516 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7516
Unique Name	rna7516
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2382
Alignment location	CM002472.1:144414..145832 +

Link to JBrowse

Properties


Property Name	Value
Product	folate-binding protein
Orig transcript id	gnl\|cribi\|Naga_100043g2.7238.mrna
Orig protein id	gnl\|cribi\|Naga_100043g2.7238
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002472.1	supercontig	CM002472.1:144414..145832 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100043g2	gene7277	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7516	rna7516-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23155.1	cds7498	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002472.1:144414..145832+
coding sequence from alignment at CM002472.1:144414..145832+

mRNA sequence

>rna7516 ID=rna7516|Name=rna7516|organism=Nannochloropsis gaditana|type=mRNA|length=2382bp
GATTTGCGGTGCGCCGTCCGACGAAGGTGACACCATGATATTTGGGTATT
TTTTGAATGCTCTTCATGCTTGTTGTCTGTCACGGCTGACCAGTAGCGCC
TTTACGGGCACTGTGAATACGTCCCTATCGATCTTGCCCCGCCTGTGACG
TACCAACTTCCTCACGGCTGCCCCGAGCCTCGAGACGCGGAGGCCGCTGC
CAGGCGATTACATGACGCCCGTCCCTCCCAACCCATGTCATGATAGCATG
CAGCCATCCGCTTTTTCTATGAATGATTTCCTCATCCCCTCGTTGCACAG
GGTTGAGAACACGCACGTCGAAGTCAACTCGCAGGACCGCGAGCTCGCAT
TGTTCCAGCCCCCTACCCCAGCGGGCCATATTGCGACTATAGGGACGACA
TCCGCTTTAATGACACAGTATCGCCCAACTTGTCCATTATGGGGCTCATT
AAAGACCACAATGGTGGCTCTTGTACTGTATGGCCTTGCAAAGCCTTGCA
ACGCTGCAGCAGAGGGTGGGGTGAGGGAAAGAGGACAGACAGGGAAGCGT
GCTGAGGAAGGGGGGTTGAGCACCAGCAACGCCCCCCAACGACAGCACGT
TCGTCGGCACGGGGAGACAATAATGCCACATTCTGATCCACCAATATACT
CTCCCGCGGGCACCGCCGAAATCGCAGTCGAAGTACCAGACTACCGGATA
CTTGCCTCGGGGGACATCCCCGGCAGCCCCGAAAGGGGCAACGGCAGCAT
CTCCCTCCCCACCCTGGACGTCTCCTTTCTCCACCAGCATGCCTTGACCA
AAGGTCCGGGTCCGCTGGCCTTGGCCGGGAATAAGAAGAACCTGTACGCG
ATGACCGCGGAAGCCTTGCTGGCCTTCAGCGTGGACCCCGGGAGCGGGAC
GATGGAGCAGATCCAGGACCTGCAGAACGGGGTGGTGGACCGGAATGGGA
AGACGGTCGAGTACTTCACGGGCCTGACCGCGCTGGCCCTGTCGCCGGAT
GAGGAGAACGTGTACACGGTGGGCACGAGCATGATGCCGGGCGTGGGCGG
GATCACGGTCTTGAAGAGGGACGCGCGGGGGGAGCTCGCCCTTGTCCAAC
AGCTTCGCGTCGATCAACGCAAAGGCATAGTGGACGTGGAGGGCATGATC
GGCGCCAACTCAGTCGCGCCCTCGCCGGACGGGCGCTTCATCTACGTGTC
CTCGGGAGGCTACTACCGGGACCACCACCTCCTGGTCTTCGACCGCGAAC
CTGTGGCGGGCCGCCTCAGCCTCCTCCAGAGCATCGACATCTACAACACT
TCCGCCGCCCGGGTCCTGCCCTCCACCCTGGCCGTGGCCCCGGACGGCAA
GCACGTGTACGTCATCGGCGACAACTTCGCCATCTCCACCAGCGCCATCA
TGGTCTACGCGGTGGGCGAGGACGGGGCGCTGGAGCTCAAGCAGGAGGCC
GGGCCCTTCCGATCCGCGTTGCTCACCTCCGCCTCCTTCGCCCCCTCCGG
CGAATTCCTCTACTGCACCGCCACCTTCGGCATCAACCTAGTCTGGGTCT
TCCGGCGCGAGCCAGACGGGCAGCTGACCACCGTCATCGACCCGGCGCTC
AATCCGGGGGGCATGGACGTGCCCCCCACCCAAGGCTCGTACTCCTCGGC
CGTGGCCGTCCAGCATTCGGTGCTGGGGCCGCTGCTGTTGGTGAGCGTGG
AGAAGGAGAATCTGGTGCATGTGGCCCTGAGGGTGGAGGAGCGGGAGGGG
CGGCTGGCCTATCTGGGGGCGGTGGGGGGGGCTGGGGGCGAGGGGGGCTT
GAAGCGCCCGGACTCGATGGCGTGGGACGCGGAGAACAGCGTCCTGTTTG
TGAGCGAGTCGGGCGACAATGCCATAGCCGCCTTCAGGTTGAGCTAGCGG
GGAGGAAGGGGGCGAACGGGGGGGTCAGGGGGGCAGCGGTGAGACGAGGG
CGGGCCGGGAGAGAGGGCAAGGGGGGAGGAAGAACGTCGACTGCGAGATT
GGCTGTATGGGGGCGCGAGAGGTAGATTGAGATTTGGCATGGGGCGGGCG
GGGGCGTGCGCTGTCACAGAGTCTTGGAGGTCTGTGGGCTCACTCGCTCC
GCGCGCGCTTTGTATCTAGGTGGAGGAGAGGGGGAGAGGAGGGCTTCTCC
CCATCGGGGCCTCCTGGATGAGAAGTGAACGGGGCAGGTGACGGGAAGCT
TCGGGAGAGAGGACGAGCGCGATTCCGGCAAAGGACAGAGGACCGGGCCC
CAGAGAGTCTGGGCGGAAGTAATGCATGTGCGCAAACGACTGAGACTGCA
ATAATTCAGACCCATCCAGCACGAGTGACTGAGTGACCGCTATCAAGCTA
AAGAATTCTATACCATAGATTGAGCAGCCCGA

protein sequence of rna7516

>rna7516-protein ID=rna7516-protein|Name=rna7516|organism=Nannochloropsis gaditana|type=polypeptide|length=439bp
MRLRCLVALGIRLSLAVGFVYPPTHGGAFGRYSPSEEMPGNVKYRAERAR
YPINTFISSQISSHEALHLQEMSRNSPEGVFLDLTSCGWGLLSVSGEDRL
RFLHNQLTNSFANAQVGDVIESSYTSSVGRAIDLVTAYVLEDEVLLLSSP
PRHAHVFESFHKYIFPLDRVQVHKKELQGFFIYMGPEAALTKLSNLLEHK
VPPPQAHRCHTLPSGLVVAEGSGLALPGLTMLDVSGSSGVAAAVSSAGVR
LGGGKEWEALRILQGRPFPEKELTLEVTPLEAGLWHTVDPEKGCYLGQET
LAKQANNKGERQRLFAVRGKGLEEKQRILDSAGGRSGVVTSCLGDEGRAG
LAYIRKTVAHPTRASLFNEGGTEPLQVSDIPYATREATTKKQGSTVTQEI
GQAAENTSAADKAVEAGRKAKKLEEMKKRLEEFQRKNKK

mRNA from alignment at CM002472.1:144414..145832+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7516 ID=rna7516|Name=rna7516|organism=Nannochloropsis gaditana|type=mRNA|length=1419bp|location=Sequence derived from alignment at CM002472.1:144414..145832+ (Nannochloropsis gaditana)
ATGCGGCTAAGATGCCTCGTAGCTCTAGGCATACGCTTGAGTTTGGCCGT
GGGATTCGTCTACCCCCCGACTCATGGCGGCGCGTTCGGGAGGTACAGCC
CCAGCGAGGAGATGCCCGGCAATGTAAAATATCGTGCAGAAAGAGCACGG
TACCCAATCAACACCTTCATCTCAAGCCAAATTTCTAGCCATGAAGCCTT
GCACTTGCAGGAAATGTCTAGAAACTCTCCAGAGGGCGTGTTTCTGGATT
TAACTTCCTGCGGCTGGGGCCTACTTAGCGTGTCAGGAGAGGATAGGCTG
CGCTTTTTGCACAATCAACTCACGAATTCGTTCGCAAACGCACAAGTCGG
TGATGTTATAGAATCATCTTATACGTCTTCCGTGGGAAGAGCCATAGACT
TGGTGACTGCGTACGTACTGGAGGATGAGGTCCTGCTTCTGTCCTCACCA
CCACGGCACGCGCACGTCTTCGAGTCCTTCCACAAGTATATCTTCCCCTT
AGACAGGTAAGGAAGCGACGTTGTCGGACCTTTACCCCCGGTTATCCCAG
GGAGCTATCCATGGTGCCTGACCTCGTTGACATTCCCTCTCGGCCATCTT
TCCAGGGTCCAGGTACACAAGAAGGAATTGCAGGGTTTTTTCATATACAT
GGGCCCAGAGGCGGCCTTGACGAAGCTCTCCAATCTGTTGGAACACAAGG
TCCCGCCTCCACAAGCTCATCGTTGCCATACCTTACCTTCAGGCCTGGTG
GTGGCCGAGGGGTCTGGCCTGGCCCTTCCTGGCCTCACCATGCTCGACGT
GAGCGGTTcctcgggcgtggcggccgccgtcTCCAGCGCGGGCGTTCGTC
TggggggtggaaaggagtgggaggctcTCCGCATCCTGCAAGGGAGGCCG
TTTCCCGAAAAGGAACTAACGCTGGAGGTCACGCCGTTGGAGGCGGGGTT
GTGGCACACCGTGGATCCCGAGAAGGGGTGCTACCTGGGACAGGAGACTC
TGGCCAAGCAGGCCAACAACAAGGGGGAGCGGCAGAGACTCTTCGCCgtg
agaggaaagggcttAGAGGAGAAGCAACGGATCCTGGACTCGGCGGGTGG
TCGGTCCGGGGTCGTGACCTCCTGTCTGGGCGATGAGGGGCGCGCGGGTC
TGGCCTATATTCGGAAGACGGTGGCCCACCCCACCAGAGCCAGCTTGTtc
aacgagggagggaccgagccGCTGCAAGTCTCGGACATTCCCTACGCGAC
AAGGGAGGCGACCACAAAGAAACAAGGCTCGACAGTGACACAGGAGATTG
GACAGGCTGCGGAAAATACAAGTGCTGCGGACAAAGCTGTCGAGGCGGGA
CGTAAAGCTAAGAAGCTAGAGGAGATGAAAAAACGTCTTGAAGAATTTCA
gagaaaaaataaaaagtAA

Coding sequence (CDS) from alignment at CM002472.1:144414..145832+

>rna7516 ID=rna7516|Name=rna7516|organism=Nannochloropsis gaditana|type=CDS|length=2640bp|location=Sequence derived from alignment at CM002472.1:144414..145832+ (Nannochloropsis gaditana)
ATGCGGCTAAGATGCCTCGTAGCTCTAGGCATACGCTTGAGTTTGGCCGT
GGGATTCGTCTACCCCCCGACTCATGGCGGCGCGTTCGGGAGGTACAGCC
CCAGCGAGGAGATGCCCGGCAATGTAAAATATCGTGCAGAAAGAGCACGG
TACCCAATCAACACCTTCATCTCAAGCCAAATTTCTAGCCATGAAGCCTT
GCACTTGCAGGAAATGTCTAGAAACTCTCCAGAGGGCGTGTTTCTGGATT
TAACTTCCTGCGGCTGGGGCCTACTTAGCGTGTCAGGAGAGGATAGGCTG
CGCTTTTTGCACAATCAACTCACGAATTCGTTCGCAAACGCACAAGTCGG
TGATGTTATAGAATCATCTTATACGTCTTCCGTGGGAAGAGCCATAGACT
TGGTGACTGCGTACGTACTGGAGGATGAGGTCCTGCTTCTGTCCTCACCA
CCACGGCACGCGCACGTCTTCGAGTCCTTCCACAAGTATATCTTCCCCTT
AGACAGGGTCCAGGTACACAAGAAGGAATTGCAGGGTTTTTTCATATACA
TGGGCCCAGAGGCGGCCTTGACGAAGCTCTCCAATCTGTTGGAACACAAG
GTCCCGCCTCCACAAGCTCATCGTTGCCATACCTTACCTTCAGGCCTGGT
GGTGGCCGAGGGGTCTGGCCTGGCCCTTCCTGGCCTCACCATGCTCGACG
TGAGCGGTTcctcgggcgtggcggccgccgtcTCCAGCGCGGGCGTTCGT
CTggggggtggaaaggagtgggaggctcTCCGCATCCTGCAAGGGAGGCC
GTTTCCCGAAAAGGAACTAACGCTGGAGGTCACGCCGTTGGAGGCGGGGT
TGTGGCACACCGTGGATCCCGAGAAGGGGTGCTACCTGGGACAGGAGACT
CTGGCCAAGCAGGCCAACAACAAGGGGGAGCGGCAGAGACTCTTCGCCgt
gagaggaaagggcttAGAGGAGAAGCAACGGATCCTGGACTCGGCGGGTG
GTCGGTCCGGGGTCGTGACCTCCTGTCTGGGCGATGAGGGGCGCGCGGGT
CTGGCCTATATTCGGAAGACGGTGGCCCACCCCACCAGAGCCAGCTTGTt
caacgagggagggaccgagccGCTGCAAGTCTCGGACATTCCCTACGCGA
CAAGGGAGGCGACCACAAAGAAACAAGGCTCGACAGTGACACAGGAGATT
GGACAGGCTGCGGAAAATACAAGTGCTGCGGACAAAGCTGTCGAGGCGGG
ACGTAAAGCTAAGAAGCTAGAGGAGATGAAAAAACGTCTTGAAGAATTTC
AgagaaaaaataaaaagtAAATGCGGCTAAGATGCCTCGTAGCTCTAGGC
ATACGCTTGAGTTTGGCCGTGGGATTCGTCTACCCCCCGACTCATGGCGG
CGCGTTCGGGAGGTACAGCCCCAGCGAGGAGATGCCCGGCAATGTAAAAT
ATCGTGCAGAAAGAGCACGGTACCCAATCAACACCTTCATCTCAAGCCAA
ATTTCTAGCCATGAAGCCTTGCACTTGCAGGAAATGTCTAGAAACTCTCC
AGAGGGCGTGTTTCTGGATTTAACTTCCTGCGGCTGGGGCCTACTTAGCG
TGTCAGGAGAGGATAGGCTGCGCTTTTTGCACAATCAACTCACGAATTCG
TTCGCAAACGCACAAGTCGGTGATGTTATAGAATCATCTTATACGTCTTC
CGTGGGAAGAGCCATAGACTTGGTGACTGCGTACGTACTGGAGGATGAGG
TCCTGCTTCTGTCCTCACCACCACGGCACGCGCACGTCTTCGAGTCCTTC
CACAAGTATATCTTCCCCTTAGACAGGGTCCAGGTACACAAGAAGGAATT
GCAGGGTTTTTTCATATACATGGGCCCAGAGGCGGCCTTGACGAAGCTCT
CCAATCTGTTGGAACACAAGGTCCCGCCTCCACAAGCTCATCGTTGCCAT
ACCTTACCTTCAGGCCTGGTGGTGGCCGAGGGGTCTGGCCTGGCCCTTCC
TGGCCTCACCATGCTCGACGTGAGCGGTTcctcgggcgtggcggccgccg
tcTCCAGCGCGGGCGTTCGTCTggggggtggaaaggagtgggaggctcTC
CGCATCCTGCAAGGGAGGCCGTTTCCCGAAAAGGAACTAACGCTGGAGGT
CACGCCGTTGGAGGCGGGGTTGTGGCACACCGTGGATCCCGAGAAGGGGT
GCTACCTGGGACAGGAGACTCTGGCCAAGCAGGCCAACAACAAGGGGGAG
CGGCAGAGACTCTTCGCCgtgagaggaaagggcttAGAGGAGAAGCAACG
GATCCTGGACTCGGCGGGTGGTCGGTCCGGGGTCGTGACCTCCTGTCTGG
GCGATGAGGGGCGCGCGGGTCTGGCCTATATTCGGAAGACGGTGGCCCAC
CCCACCAGAGCCAGCTTGTtcaacgagggagggaccgagccGCTGCAAGT
CTCGGACATTCCCTACGCGACAAGGGAGGCGACCACAAAGAAACAAGGCT
CGACAGTGACACAGGAGATTGGACAGGCTGCGGAAAATACAAGTGCTGCG
GACAAAGCTGTCGAGGCGGGACGTAAAGCTAAGAAGCTAGAGGAGATGAA
AAAACGTCTTGAAGAATTTCAgagaaaaaataaaaagtAA

Synonyms

Publications