rna7514, rna7514 (mRNA) Nannochloropsis gaditana

Overview
Namerna7514
Unique Namerna7514
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1899
Alignment locationCM002472.1:136365..137080 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100484g3.2350.mrna
Orig protein idgnl|cribi|Naga_100484g3.2350
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:136365..137080 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100484g3gene7274Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7514rna7514-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23180.1cds7496Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7514 ID=rna7514|Name=rna7514|organism=Nannochloropsis gaditana|type=mRNA|length=1899bp
TTGAAACAGAGGACTGCAACTGGATTGCAACACGGAGGTACTACCGGGGA
GGGGGGGAAATTGCGAAACTAGAAGTAAAAGGTAGTCTTTGCAGACAGCA
TCAGGCCTCGGTACCTCTCCATGCTCCTTGCCCTCCTGACTCTGCCTGTC
CAGCTTGCCTTCATGCTAAACAGCCCCACTATCATCCACGTCTTTGGTCT
AAACACCTGCGTGAATTTGGTATCTGGTTTGTGCTTTTTGCCAGGCCCCT
TGAGCAGAGGCTGTAGCTCAAAAGCTCTCATGACCTCACGGCATTCCTCA
TCTCGTTTTCGGGAGTCTTTTGGTGAATTTTCATCCACTGTACGTACACA
AAAATGGAAAAGCAGTAGATCAATAAGCACCAGGACTTCCACAAGCGTTT
TCTCGAGTTCCGGCGCCTCCCTCCACATGTCTCCCTCGGAGCCGGAGGGG
GCCCGTGACCCGTTGAAGAAGCGGGGAAGGCCGGCCAAGGGCCCAAAGCC
GTCGGCTCAAGACGCCGCGATGGTCGCGGGGGCAGAGTCAAGTGCGCGTC
GAGTGCCTCTCCATGGGGATCAAACGAGGAAAGAGGTGGCTTCGGTGGGA
AGAGGCAGGGAGCCACGCTCACGAAAGGCAGCTGCGAGCCCGGAGGCGAT
GAATGGCACCGATCCCTCCTCTTCCACCCTCTCCCCTCCTAAAAAAGCGC
GGAAAGGACGCTCGAGAAAAGGGGACGATGCCGTCTCGCAAGGCACGGCT
GTATCGACGGAAAGATTGAAGGACGCGGCCGCTCCTACTTCCGCCGGCAG
CTCCGCCGTCCCCAAGAGCAAACGCCCCCCCCTTCAACGGGCAACCATCC
CCCGAGGCCTCACTCCGCGACTAGAGGACGGCCCGCCCGTCTCCTCCTCC
TCCTCCTCCTCCTCCTCCCGTCCCAGGCGTCGCCTCCGCCTCCTCTCCTG
GAACGTGGCCGGCCTCCGCGGCTTGTTGAAGAAAGGCGAGACCGCCGCCG
AGGCCTTCCGCTCCCTCCTCCTCCGCGAGCGCCCCGACGTGCTCTGCCTC
CAGGAGACCAAGCTGCAGGAGGAGCACGTGGCCGAGGTGGCGGCCGCGCT
CCGGGAGCTGCACCTGCCCACGTTCGAGGGGAACTGGCACTGCTCCACCG
CCAAGAAGGGCTACTCGGGCACCTCCGTGCTGGTCTCGGAGTCGGCGGGG
CTGGCGGTGGGGCCGGGGGGGGTGACGTGCGGCATGGAGGGGGAGGGAGA
CGGCGAGGGCGAGGGGCGGGTCATCTCGGTGGACTTGGGCGCCTTCACGC
TCGTGAATGTCTACACACCCAACAGCGGGGAGGGCTTACGGCGCCTGGCG
TTTCGGACCCAGGCGTGGGATCGGGCGTTCGAGCGGCATTTGGAGGCCTT
GCAAGGGGCAGGCGACGGGAACCGGGCCGTGCTCTGCTGCGGCGACTTGA
ACGTGGCGCATCTCGACGCGGACTTCTACAATCCGGGGGAGGCGCGCATG
GCCAAAGCGGCGGGGACGACGCCGGAGGAGCGGGCCTCGTTCGGGCGGCT
CCTGGAAGGCGCGGGCATGGTCGACTCCTTTCGGCACTACCACCCCGACG
TGACCGGTTGCTACTCCTACTGGTCCATGCGCGCAGGGAACCGGCCCTAC
AACCGAGGCATGCGCCTTGATTACTTTCTGGCGAGTAAAAACATGCTGCG
GGGAGGGGATGAGGGTGGAGGGGTGCCGCGGCTGCTCGATTCTTTTATAT
TGGATCAGGACCCTGCCGTATCCAAGTTGAGTGACCATGCCCCTGTGGGC
GTGCTGCTGGAAGTGTGAAGCGCGCACGTCGGGGTCCTGACACTCTCAGA
ATGCAAAATGCAAAGCATAACCAAACAAATTGTACAATCATACGCAACG
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protein sequence of rna7514

>rna7514-protein ID=rna7514-protein|Name=rna7514|organism=Nannochloropsis gaditana|type=polypeptide|length=87bp
MESVKAAASFAASNLTKPSYYKQQFEGFAKYYYWKYIRPGSIKPLAHLMV
LTGCVGYAVEWYALGQHHVAHKKAIVDKALAEHGHGH
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mRNA from alignment at CM002472.1:136365..137080+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7514 ID=rna7514|Name=rna7514|organism=Nannochloropsis gaditana|type=mRNA|length=716bp|location=Sequence derived from alignment at CM002472.1:136365..137080+ (Nannochloropsis gaditana)
ATGGAGTCTGTCAAAGCCGCGGCGAGCTTTGCCGCCTCCAACCTGACGAA
ACCGGTGAGTTCTATGCATGTGGTGACAGACATTTAGTTGTCGACCTTTT
GAGGGGAGGGACTAGGATGCTTGCTCTGTATTACGGGACTCGTCAGGCAT
GGCAaggatgccctcccttcgtacTCTCACAAATGTGTGTCATAAAGTAG
AAGTTAAATTCCTGGCCCGTGCAACGCATCTGAACGTCAGAAGTAATTCC
ACTAAGGGGAGCCCCCGGTAGCCGCCGGGCAgaccgtcctccttgctcgt
TACTCTCCGTCTCGGCATGTTGCGCGGGAACCGAATCGAGGGACCCGCCT
CCTGTACCcagctttctttttttttcattttcctgGAATTCTTCTCGAGG
CTTGTCGCGGCGCATCTGTTCGGGGCGCGTGCGATGtcctcttgcccctc
cgAGGCCATGTGGAGGCCTTCTAGCACTGACTCGGtattcttcctttcca
tcccagtCCTACTACAAGCAGCAGTTCGAGGGGTTCGCCAAGTACTATTA
CTGGAAATACATCCGCCCTGGCAGCATCAAGCCGCTCGCACACCTGATGG
TGCTGACCGGGTGCGTGGGCTATGCCGTCGAGTGGTACGCCCTGGGACAG
CACCACGTGGCGCACAAGAAGGCGATCGTGGacaaggccctggcggagca
cgggcacgggcactag
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Coding sequence (CDS) from alignment at CM002472.1:136365..137080+

>rna7514 ID=rna7514|Name=rna7514|organism=Nannochloropsis gaditana|type=CDS|length=528bp|location=Sequence derived from alignment at CM002472.1:136365..137080+ (Nannochloropsis gaditana)
ATGGAGTCTGTCAAAGCCGCGGCGAGCTTTGCCGCCTCCAACCTGACGAA
ACCGtCCTACTACAAGCAGCAGTTCGAGGGGTTCGCCAAGTACTATTACT
GGAAATACATCCGCCCTGGCAGCATCAAGCCGCTCGCACACCTGATGGTG
CTGACCGGGTGCGTGGGCTATGCCGTCGAGTGGTACGCCCTGGGACAGCA
CCACGTGGCGCACAAGAAGGCGATCGTGGacaaggccctggcggagcacg
ggcacgggcactagATGGAGTCTGTCAAAGCCGCGGCGAGCTTTGCCGCC
TCCAACCTGACGAAACCGtCCTACTACAAGCAGCAGTTCGAGGGGTTCGC
CAAGTACTATTACTGGAAATACATCCGCCCTGGCAGCATCAAGCCGCTCG
CACACCTGATGGTGCTGACCGGGTGCGTGGGCTATGCCGTCGAGTGGTAC
GCCCTGGGACAGCACCACGTGGCGCACAAGAAGGCGATCGTGGacaaggc
cctggcggagcacgggcacgggcactag
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Synonyms
Publications