rna7507, rna7507 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7507
Unique Name	rna7507
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1253
Alignment location	CM002472.1:117618..119990 -

Link to JBrowse

Properties


Property Name	Value
Product	ppr repeat-containing protein
Orig transcript id	gnl\|cribi\|Naga_100343g1.7638.mrna
Orig protein id	gnl\|cribi\|Naga_100343g1.7638
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002472.1	supercontig	CM002472.1:117618..119990 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100343g1	gene7267	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23184.1	cds7489	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7507	rna7507-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002472.1:117618..119990-
coding sequence from alignment at CM002472.1:117618..119990-

mRNA sequence

>rna7507 ID=rna7507|Name=rna7507|organism=Nannochloropsis gaditana|type=mRNA|length=1253bp
AGGATGCCATGCATAAATTCCGGGCAATGTAATGATGAGGCATATACTTT
TTATGGAATGCTAAAATCTTGTCAAGGCAGCTCGATCTCAGACGTCATAT
TTGAAAGCGTTTCCGTAGGCAACTTGATTTCTTCGCCCCCACCCTTTCAA
AGGCTGGTTGACATCCGCATCATTCACTCGGCTTCTTTTTTTATGCTTCC
TTTCTATGCTCGCCTTCAATCCCATTACGCGCATACGCAGTCACATCTTT
TCCTAATCATGCGCTTCTCTACCTCCATCGCCTCCGTCCTCTTCGCCGCT
GTGCCTATGGCCATGGCCCGCACTGTCATGATTGGTGACTCTATGTTTGC
CGGGGGGAGCAAGGTCAATAATTGGCTTCAGGAATGGGCAGGGCATGAGA
TCGAGAACATCGCCATCGTCGGTGCCTCGCTGCATGAGGGGTGGACCGAG
AGCATTCCAGCAGAATACGCAGAGCTCGACAAGACGGTGGTGCCTACCAC
CATCATCATGGATGGGGGCGGGAACGATGTCATCTCCAAACGCAGCGATT
GCGAGTCTATGGACGACGCCTGCAGGCTTCAAATCGATGAGGCCGTGAGC
ATCGGCTCCGACCTGCTGGAGCAAATGCACGAAGACGGAGTGGCCCATGT
CATCTGGATGGGCTTCTTCTACATCGGTGGCTTGGAGAAGGCGGCAGACT
ACGGCACGGAGAAGGTGGCGGAGGCCTGCGCGACGGCAAAGATTGACTGC
CACCTGGCCGACCTGCGAGACTTGCAGATCCCCCGCGGGTGGGACGGGGT
GCACCCAACGGACGAGGGCTACAAGATGCTGGCGGAGAGGATCTGGGAGG
TGAAGCTCGAGAACCACGTGCCTATTTAAAGGAAGGGCGAGGTCCGGGGC
GGCAGTAGAGAGGAGTGAGATCAGGAGTGAGTCGGGAGGCGGGGCGCCGG
AGGAAGCTTGGGGGCAAGACGGGCTCGACAGAGAAAGCGGTAATATGTAG
ACAAGTTAGGCAGAGAAAACAGGGGATGGGATCCCTTGTGTTTCAACTCG
GTGAAGGTGGAGGATCCGCCTTACTTGCATGTGCATGTCTACATCTCTGC
TCTGAGCCCGGCGATTGAAGATTCGGTGCGTTGGCAAGGGCGCAGGAGCA
GGAAAGAGGTAGAAGGGACATACTCGCACGCTAACGCAGACGTTAGTCCT
GAAAACAACAAGGCTTTAAAGTACAATGTCGGAGGTATCCACATAGGCCG
CAC

protein sequence of rna7507

>rna7507-protein ID=rna7507-protein|Name=rna7507|organism=Nannochloropsis gaditana|type=polypeptide|length=699bp
MKAESSGPAHGEREGRGGLREFSESTFLLVLSLCKAAEEGAGREGGQGRW
EGGTEGGREGGREGGALEAALLVLAGMVERGHGNVLAFNMVLKMCERRGD
ARRALLLLAEMRSLPALLPDLITYNTLISACAKGHRPRDAQRLVKELEGE
GGRILPSLVTYNSLLAALAQAGQWKEAMRVLQTLQRKNLRPDVITYTSLI
QACSKARPSQVKKALYYLELMKEAREGGGEVTPDAVAYAAAIEACARGGP
NAGWGETALRLFEEMQERGMEAPAQVYRALVQACGNDVVPEGRAPTPSGP
SGASDTSAAMRASTPPAPRRPMTTARVWSLLQACPPAHRNNFVYTAAAKA
CERGRDWGMALRLVEDMRRLGIEPDDITHGQLLHVLASMGRWEEALGVLA
SIRRRNVRHYTSAIRACGLAGGAAAREGMPLYVRMREEGLVPDLYVYNVV
LQALRAADCDLPGNGQPLSSPSSPPSSPSSSTSVADDALALYEEMCGNSP
AKYAAGTLSFGKNNRRGQQLPRSLPPPPPVTPDIVSFTVLISILERHGRH
AQALRVFQDGVRAQVLMTTPLDTLWEKDLSRLSFQLVRAAVDFSVGELVA
DFRHQLKAAAGTKDPDVQDLVLITGSDVRGARGAGGGPRQDGMGKERMGA
AHGQVPETRQALARLVLSEKGLIPADEESRKPGVLTVPANVMRQWLCKQ

mRNA from alignment at CM002472.1:117618..119990-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7507 ID=rna7507|Name=rna7507|organism=Nannochloropsis gaditana|type=mRNA|length=2373bp|location=Sequence derived from alignment at CM002472.1:117618..119990- (Nannochloropsis gaditana)
ATGAAGGCCGAGAGCTCGGGCCCTGCTCACGGGGAAAGGGAGGGGCGGGG
CGGGCTGCGGGAGTTTTCGGAGAGTACCTTCCTACTGGTGCTCTCCCTGT
GCAAGGCGGCGGAGGAAGGGGCAGGGCGGGAGGGAGGGCAGGGCCGCTGG
GAGGGAGGGACCGAGGGCGGGAGGGAGGGAGGGAGGGAGGGCGGGGCCCT
GGAGGCGGCCTTGCTGGTGTTGGCCGGGATGGTGGAGCGCGGGCACGGGA
ACGTGCTGGCGTTCAATATGGTCCTGAAGATGTGCGAGCGACGGGGAGAC
GCCCGGCGAGCCCTGCTACTCCTGGCAGAAATGCGCTCCCTGCCCGCCCT
CCTTCCCGACCTCATCACTTACAACACCCTCATCTCCGCCTGCGCCAAGG
GCCACCGGCCCCGGGACGCGCAGCGCCTGGTCAAGGAGCTGGAAGGGGAG
GGCGGGCGGATCCTTCCCTCCCTGGTAACGTACAACTCCCTCTTGGCCGC
CCTCGCTCAGGCGGGGCAGTGGAAAGAGGCCATGCGGGTTCTGCAGACTC
TGCAGCGGAAGAACCTCCGGCCTGATGTCATCACTTACACCAGCCTCATC
CAGGCTTGCTCCAAGGCCCGACCGTCCCAGGTGAAGAAGGCGCTTTACTA
CCTGGAGCTGATGAAGGAAGCGAGGGAGGGCGGGGGAGAGGTCACGCCGG
ACGCGGTCGCCTACGCGGCGGCCATCGAGGCCTGCGCACGGGGGGGGCCC
AACGCGGGCTGGGGGGAGACGGCCTTGCGGCTCTTCGAGGAGATGCAGGA
GCGAGGGATGGAGGCGCCGGCGCAGGTCTACCGGGCCTTAGTCCAGGCGT
GTGGGAACGACGTCGTCCCCGAGGGCAGGGCGCCAACGCCTTCGGGGCCT
TCGGGGGCCTCGGACACGTCGGCGGCAATGCGAGCGTCCACCCCCCCGGC
CCCGCGACGGCCCATGACCACGGCCCGGGTCTGGTCCCTCCTCCAAGCCT
GCCCGCCCGCGCACCGGAACAACTTCGTCTACACGGCGGCCGCCAAGGCC
TGCGAGCGGGGCCGGGACTGGGGCATGGCCCTCCGGCTCGTGGAGGACAT
GCGCCGGCTCGGTATCGAACCCGACGACATTACGCACGGGCAGCTTTTGC
ACGTCCTCGCCTCCATGGGCCGGTGGGAGGAGGCCTTGGGAGTGCTCGCC
TCCATCCGGCGCCGGAACGTCCGGCACTACACCTCCGCAATCCGGGCCTG
CGGGTTGGCCGGGGGGGCAGCCGCGCGGGAGGGGATGCCTCTGTACGTGA
GGATGAGGGAAGAGGGCCTCGTGCCCGACCTGTACGTCTACAATGTGGTT
CTCCAGGCGTTGCGGGCCGCGGATTGTGACTTGCCCGGGAACGGGCAGCC
TCTTTCCTCCCCGTCCTCACCCCCTTCCTCCCCCTCTTCCTCGACTTCGG
TCGCCGACGACGCCCTGGCCCTCTACGAGGAGATGTGCGGCAATTCCCCC
GCTAAGTACGCCGCGGGGACCCTGTCTTTTGGGAAAAATAACAGACGCGG
GCAGCAGCTCCCACGCTCTCTCCCGCCCCCGCCCCCCGTGACCCCAGACA
TCGTCAGCTTCACCGTCCTCATCTCCATCCTTGAGAGGCACGGGCGACAC
GCGCAGGCACTGCGGGTTTTTCAGGACGGGGTCCGTGCCCAGGTGCTCAT
GACCACGCCCCTCGACACCCTGTGGGAGAAAGACCTGTCCCGACTCTCGT
TCCAACTCGTGCGCGCTGCAGTGGACTTCTCCGTGGGCGAGTTGGTAGCG
GACTTCCGGCATCAGTTGAAGGCGGCAGCGGGGACCAAGGACCCCGACGT
GCAGGACCTGGTCTTGATCACGGGCTCGGACGTCCGGGGAGCGCGAGGAG
CGGGCGGTGGACCCAGGCAAGATGGGATGGGGAAGGAAAGAATGGGAGCG
GCGCACGGACAGGTGCCAGAGACGCGGCAAGCTTTGGCGCGCTTGGTTTT
GTCAGAGAAGGGATTAATACCCGCAGATGAGGAGTCGAGAAAACCAGGTG
TCCTTACAGTGCCAGCCAATGTCATGCGGCAGTGGCTTTGCAAGCAATAG
TCAGGTATATAGATGCGGGCGCATGAACGATGGCAATAAAGTAAAATAAC
CGTGCGGACAAGAGGATCGATATTCACACGTATATGAAAGGCGTTTCCGC
GGTTTTGAATGGCATTAACTGGCATTAAAGGTTTTCTTTATTAAGAATGT
GGTGAAGCGTTGACCAGTGAAAAGTACGTGACGTTTGCAAGTGTCGCATG
TAGACAACATAGCTCCGTTCTCGTCTCGAGGACACGAAGCATTTTCCCGC
ACATCACGCACCATGCCGTAACA

Coding sequence (CDS) from alignment at CM002472.1:117618..119990-

>rna7507 ID=rna7507|Name=rna7507|organism=Nannochloropsis gaditana|type=CDS|length=2100bp|location=Sequence derived from alignment at CM002472.1:117618..119990- (Nannochloropsis gaditana)
ATGAAGGCCGAGAGCTCGGGCCCTGCTCACGGGGAAAGGGAGGGGCGGGG
CGGGCTGCGGGAGTTTTCGGAGAGTACCTTCCTACTGGTGCTCTCCCTGT
GCAAGGCGGCGGAGGAAGGGGCAGGGCGGGAGGGAGGGCAGGGCCGCTGG
GAGGGAGGGACCGAGGGCGGGAGGGAGGGAGGGAGGGAGGGCGGGGCCCT
GGAGGCGGCCTTGCTGGTGTTGGCCGGGATGGTGGAGCGCGGGCACGGGA
ACGTGCTGGCGTTCAATATGGTCCTGAAGATGTGCGAGCGACGGGGAGAC
GCCCGGCGAGCCCTGCTACTCCTGGCAGAAATGCGCTCCCTGCCCGCCCT
CCTTCCCGACCTCATCACTTACAACACCCTCATCTCCGCCTGCGCCAAGG
GCCACCGGCCCCGGGACGCGCAGCGCCTGGTCAAGGAGCTGGAAGGGGAG
GGCGGGCGGATCCTTCCCTCCCTGGTAACGTACAACTCCCTCTTGGCCGC
CCTCGCTCAGGCGGGGCAGTGGAAAGAGGCCATGCGGGTTCTGCAGACTC
TGCAGCGGAAGAACCTCCGGCCTGATGTCATCACTTACACCAGCCTCATC
CAGGCTTGCTCCAAGGCCCGACCGTCCCAGGTGAAGAAGGCGCTTTACTA
CCTGGAGCTGATGAAGGAAGCGAGGGAGGGCGGGGGAGAGGTCACGCCGG
ACGCGGTCGCCTACGCGGCGGCCATCGAGGCCTGCGCACGGGGGGGGCCC
AACGCGGGCTGGGGGGAGACGGCCTTGCGGCTCTTCGAGGAGATGCAGGA
GCGAGGGATGGAGGCGCCGGCGCAGGTCTACCGGGCCTTAGTCCAGGCGT
GTGGGAACGACGTCGTCCCCGAGGGCAGGGCGCCAACGCCTTCGGGGCCT
TCGGGGGCCTCGGACACGTCGGCGGCAATGCGAGCGTCCACCCCCCCGGC
CCCGCGACGGCCCATGACCACGGCCCGGGTCTGGTCCCTCCTCCAAGCCT
GCCCGCCCGCGCACCGGAACAACTTCGTCTACACGGCGGCCGCCAAGGCC
TGCGAGCGGGGCCGGGACTGGGGCATGGCCCTCCGGCTCGTGGAGGACAT
GCGCCGGCTCGGTATCGAACCCGACGACATTACGCACGGGCAGCTTTTGC
ACGTCCTCGCCTCCATGGGCCGGTGGGAGGAGGCCTTGGGAGTGCTCGCC
TCCATCCGGCGCCGGAACGTCCGGCACTACACCTCCGCAATCCGGGCCTG
CGGGTTGGCCGGGGGGGCAGCCGCGCGGGAGGGGATGCCTCTGTACGTGA
GGATGAGGGAAGAGGGCCTCGTGCCCGACCTGTACGTCTACAATGTGGTT
CTCCAGGCGTTGCGGGCCGCGGATTGTGACTTGCCCGGGAACGGGCAGCC
TCTTTCCTCCCCGTCCTCACCCCCTTCCTCCCCCTCTTCCTCGACTTCGG
TCGCCGACGACGCCCTGGCCCTCTACGAGGAGATGTGCGGCAATTCCCCC
GCTAAGTACGCCGCGGGGACCCTGTCTTTTGGGAAAAATAACAGACGCGG
GCAGCAGCTCCCACGCTCTCTCCCGCCCCCGCCCCCCGTGACCCCAGACA
TCGTCAGCTTCACCGTCCTCATCTCCATCCTTGAGAGGCACGGGCGACAC
GCGCAGGCACTGCGGGTTTTTCAGGACGGGGTCCGTGCCCAGGTGCTCAT
GACCACGCCCCTCGACACCCTGTGGGAGAAAGACCTGTCCCGACTCTCGT
TCCAACTCGTGCGCGCTGCAGTGGACTTCTCCGTGGGCGAGTTGGTAGCG
GACTTCCGGCATCAGTTGAAGGCGGCAGCGGGGACCAAGGACCCCGACGT
GCAGGACCTGGTCTTGATCACGGGCTCGGACGTCCGGGGAGCGCGAGGAG
CGGGCGGTGGACCCAGGCAAGATGGGATGGGGAAGGAAAGAATGGGAGCG
GCGCACGGACAGGTGCCAGAGACGCGGCAAGCTTTGGCGCGCTTGGTTTT
GTCAGAGAAGGGATTAATACCCGCAGATGAGGAGTCGAGAAAACCAGGTG
TCCTTACAGTGCCAGCCAATGTCATGCGGCAGTGGCTTTGCAAGCAATAG

Synonyms

Publications