rna7505, rna7505 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7505
Unique Name	rna7505
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	942
Alignment location	CM002472.1:113644..115865 +

Link to JBrowse

Properties


Property Name	Value
Product	diacylglycerol acyltransferase type 2
Orig transcript id	gnl\|cribi\|Naga_100343g3.7641.mrna
Orig protein id	gnl\|cribi\|Naga_100343g3.7641
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002472.1	supercontig	CM002472.1:113644..115865 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100343g3	gene7265	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7505	rna7505-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23187.1	cds7487	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002472.1:113644..115865+
coding sequence from alignment at CM002472.1:113644..115865+

mRNA sequence

>rna7505 ID=rna7505|Name=rna7505|organism=Nannochloropsis gaditana|type=mRNA|length=942bp
ATGCACGCTCGATTGACCCCCACACAGACAGAAAGCCACAGTATGAAAGG
AGATGGGGCCCCAAATTCACGGATCCGGGGTTGGCATCAGCAAAGGAGGC
GGCGTATTACGATGATGGGGCAGGTGTTTGTGGGTTTGTGTCTGGGTGCA
GTGGGGGCAGAGACGACATACCCGTGTAGGGGTTCGCGGTCGTCCTATTC
CTTCTGTGCGTGTTCTGCTGCTTTCATCCCATCCCACTATGAGGGATGCG
GCAGCCTATCATGGGAATGGGAAAGAAAAGGAAGACACCATCAAACAACA
CGGTACGGGCACATAAAGCGCGCGGAATCCTTTCCAGAAGGCGGTGAACA
GTTGCGACATCTTTCCCCGCTCTTCGCCCCCCCCAGGCCCGGGACACAAG
GTCTCTGGGCCCTTCGTCGCCGCACCTCGGAGCAGGAGGAAGCGGATGTG
GACTCGGAGAACCGTCGGAGGAAATCCGTTCCCGTCACCTCTTTGGAACA
GCTGCATCAGGTGCTCTCCCCTGAAGGCGGTCTACGCCTCCGGGACCTGG
ACGTCCGGGGCGACTCCACCGCCGCCCTCCTCTCTTCCTCCTTCCCTCCC
TCCCCCTCCCCCTCCTCCTCGCCCTCCTTCCACCCCGTCGCCGCCGCCAT
CCACGCCCGGATCGCCTCCCGCTCCACACCCGGCGCCCGGACCGACGGGC
TCAAGATCGGCCTCTCCCTTGAAGGCGGGGGCATGCGGGGGTGCGTGGGC
GCGGGAATGCTCGCCGCGCTCAACCACTTGGGCCTCCGAGACGCCTTCGA
CGTGGTCTATGGGTCCTCGGCAGGCTCCTTGATGGGCGCCTACTTCTTGA
GCGGGCAGACCCCCCTCGAGGGGCCGGGGATCTACTACGACATCCTCTCC
CAGGCCGGGCGGAAGTTCATCGACCAGGCTCCAATTCCATGA

protein sequence of rna7505

>rna7505-protein ID=rna7505-protein|Name=rna7505|organism=Nannochloropsis gaditana|type=polypeptide|length=360bp
MTPQAETNVSTNGVANSQTHSSPPSSPGVQYKAAGGKMIRVALAARDNGD
MSLFREALAMLTMGVMMSWYYLVVILSLLCVAGLFFPTWRVVAGTAFVLM
WSAAFLPLDYQGWDAFCNSFLFKLWRDYFHYEYILEEAIDPKKRYLFAEM
PHGIFPWGEVISISITKQLFPGSRVGSIGASVIFLLPGLRHFFSWIGCRP
ASPENIKKIFEEGADCAVTVGGVAEMFLVGGDKERLYLKKHKGFIREAIK
NGADVVPVFCYGNSKLFSVVGESSRLSMGLLKRLSRRIKASVLIFYGRLC
LPIPIRHPLLFVVGKPLPVVQKDAPSKEEIAAMHALFCEKVEELYYKFRP
EWETRPLSIE

mRNA from alignment at CM002472.1:113644..115865+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7505 ID=rna7505|Name=rna7505|organism=Nannochloropsis gaditana|type=mRNA|length=2222bp|location=Sequence derived from alignment at CM002472.1:113644..115865+ (Nannochloropsis gaditana)
ACACTGGGGTACCGCGAGTTTCTGAAGTATAAGCTTGCCCCTCCCAACCA
CACGCAATCCCACAGGCGGTTACGAGGATCCCCCACCGTCGGTGTGAATA
GGGAGATATGACGCCGCAAGCTGAAACGAATGTTTCCACGAACGGGGTAG
CAAACTCTCAGACCCATTCTagccccccctcgtccccagGTGTCCAATAT
AAGGCAGCGGGAGGCAAAATGATCAGGGTCGCCCTGGCGGCCCGGGACAA
CGGCGACATGTCGCTCTTtcgggaggcgctggccatgCTGACGATGGGCG
TGATGATGAGCTGGTATTACCTGGTGGTgatcctctcccttctctgcgTG
GCGGGCCTCTTTTTTCCGACCTGGCGCGTCGTGGCAGGGACGGCCTTCGT
GCTCATGTGGAGTGCGGCCTTCCTACCCCTGGACTACCAGGTACGGCTTT
CTGTTTTCGCATCTTGTCGGTGATGTCCGGCGTCGAACATGTCACTGCCC
CGGGCCGACCATGGAGGAGCCCTCTGTTCACTTTCCCTACCCCCTTCCTA
GGGATGGGACGCGTTTTGCaattccttccttttcaagcTCTGGCGGGACT
ACTTCCACTACGAATACATTCTGGAGGAAGCAATCGACCCGAAGAAGCGG
TATTTGTTCGCAGAAATGCCCCACGGCATCTTCCCCTGGGGAGGTATGGA
AGAGAAACAAGGGGGGTTGAgaatgagggagaaaatggaaTCAGACGCTC
TCTCGCATGGGATGAAAAAGTGTATCGCCCATTTGGAAGGCAGAATATAC
CTTATGCGGAGGCCATTTGGAAGGCAGAATATACCTTATGCGGAGGCCAT
TGCCTTTCTCAGTGTTCCACTTCTTTCCTAacccacccaccctcccaccc
tccctccctccctccctccctccctccctccctcccttcctcccctccca
gagGTCATTTCCATCTCCATCACCAAGCAGCTCTTCCCCGGAAGCCGCGT
AGGCAGCATTGGCGCCAgcgtcatcttcctcctcccgggcctcCGTCACT
TCTTCTCTTGGATCGGCTGTCGGCCCGCGTCCCCCGAGAACATCAAGAAA
ATAtttgaggaaggagcggacTGCGCGGTCACGGTGGGGGGAGTGGCCGA
GATGTTCTTGGTGGGCGGGGACAAGGAGCGGTaagaggatgggggcggTC
TGAGTGAGGGTAAAGGGTCCGTGGAAAGGGACAGGGCCTGTCTGTGCCGG
AGCTCGTGGTCtcaccccatcctcctctccccgccctccccactgCCCGG
CAGCCTGTATTTGAAGAAACACAAGGGGTTCATTCGGGAGGCGATCAAAA
ACGGGGCGGATGTGGTGCCCGTCTTCTGCTACGGAAATTCGAAGCTCTTC
AGCGTGGTCGGGGAGAGCAGCCGCCTCTCCATGGGGCTCCTCAAGCGGCT
CTCCCGACGCATCAAAGCCAGCGTCCTCATCTTCTACGGACGCCTTTGCC
TGCCCATCCCCATCCGGCACCCCTTGCTCTTCGTGGTGGGGAAACCGCTC
CCCGTGGTCCAGAAGGACGCTCCTtccaaggaggagatcgcCGCTATGCA
CGGTAGGTggaaccccccccccgggcccgtcTCACGTTTTGTCCGGGCAC
CCCTCCCATCGCTTTTGTTTCCCCAGTGTGGCTCGAGGGGTCTCGCTGCC
GGCCTAGGACGAGGAGCGCTCTCCTCGCTATGTCCTGTCTCTTACCATCG
TCCTCACCACCCGCACCTCTTTCCAACCCCTTACACAGCCCTGTTTTGCG
AGAAGGTAGAGGAATTGTACTACAAATTTAGACCCGAATGGGAGACTCGC
CCCCTCTCCATTGAGTGAGCAGGGGCCCGTCGGGGGGCGTCGGGGGCGAG
AGGTTTAGGAAGGGGGGCCTGAGACACTGGAGATGAGCatcggagggaag
ggatggacgGTGTAAGCGGGAGGATGAGAGTGTgtctggtggaggcagga
tgCTTGGGCAAGAAGTGTAGAGTAATGGTCGAAGTTGTGGGAgggcccag
ggagggagggagggggccgctTGGGGCACCCATTTTGGCGGGAAgcatgg
ggatggagggactTGAAAGAAGAAGTACGAAAGACTACAAGTGACCGGGG
TTTTGGTCAAGGCGAGCACTTTCAGGCACCACATTGCCTCGCCCCTCCGT
ATCCTGATTCCCTATTGGTACG

Coding sequence (CDS) from alignment at CM002472.1:113644..115865+

>rna7505 ID=rna7505|Name=rna7505|organism=Nannochloropsis gaditana|type=CDS|length=5415bp|location=Sequence derived from alignment at CM002472.1:113644..115865+ (Nannochloropsis gaditana)
ATGACGCCGCAAGCTGAAACGAATGTTTCCACGAACGGGGTAGCAAACTC
TCAGACCCATTCTagccccccctcgtccccagGTGTCCAATATAAGGCAG
CGGGAGGCAAAATGATCAGGGTCGCCCTGGCGGCCCGGGACAACGGCGAC
ATGTCGCTCTTtcgggaggcgctggccatgCTGACGATGGGCGTGATGAT
GAGCTGGTATTACCTGGTGGTgatcctctcccttctctgcgTGGCGGGCC
TCTTTTTTCCGACCTGGCGCGTCGTGGCAGGGACGGCCTTCGTGCTCATG
TGGAGTGCGGCCTTCCTACCCCTGGACTACCAGGGATGGGACGCGTTTTG
CaattccttccttttcaagcTCTGGCGGGACTACTTCCACTACGAATACA
TTCTGGAGGAAGCAATCGACCCGAAGAAGCGGTATTTGTTCGCAGAAATG
CCCCACGGCATCTTCCCCTGGGGAGagGTCATTTCCATCTCCATCACCAA
GCAGCTCTTCCCCGGAAGCCGCGTAGGCAGCATTGGCGCCAgcgtcatct
tcctcctcccgggcctcCGTCACTTCTTCTCTTGGATCGGCTGTCGGCCC
GCGTCCCCCGAGAACATCAAGAAAATAtttgaggaaggagcggacTGCGC
GGTCACGGTGGGGGGAGTGGCCGAGATGTTCTTGGTGGGCGGGGACAAGG
AGCGCCTGTATTTGAAGAAACACAAGGGGTTCATTCGGGAGGCGATCAAA
AACGGGGCGGATGTGGTGCCCGTCTTCTGCTACGGAAATTCGAAGCTCTT
CAGCGTGGTCGGGGAGAGCAGCCGCCTCTCCATGGGGCTCCTCAAGCGGC
TCTCCCGACGCATCAAAGCCAGCGTCCTCATCTTCTACGGACGCCTTTGC
CTGCCCATCCCCATCCGGCACCCCTTGCTCTTCGTGGTGGGGAAACCGCT
CCCCGTGGTCCAGAAGGACGCTCCTtccaaggaggagatcgcCGCTATGC
ACGCCCTGTTTTGCGAGAAGGTAGAGGAATTGTACTACAAATTTAGACCC
GAATGGGAGACTCGCCCCCTCTCCATTGAGTGAATGACGCCGCAAGCTGA
AACGAATGTTTCCACGAACGGGGTAGCAAACTCTCAGACCCATTCTagcc
ccccctcgtccccagGTGTCCAATATAAGGCAGCGGGAGGCAAAATGATC
AGGGTCGCCCTGGCGGCCCGGGACAACGGCGACATGTCGCTCTTtcggga
ggcgctggccatgCTGACGATGGGCGTGATGATGAGCTGGTATTACCTGG
TGGTgatcctctcccttctctgcgTGGCGGGCCTCTTTTTTCCGACCTGG
CGCGTCGTGGCAGGGACGGCCTTCGTGCTCATGTGGAGTGCGGCCTTCCT
ACCCCTGGACTACCAGGGATGGGACGCGTTTTGCaattccttccttttca
agcTCTGGCGGGACTACTTCCACTACGAATACATTCTGGAGGAAGCAATC
GACCCGAAGAAGCGGTATTTGTTCGCAGAAATGCCCCACGGCATCTTCCC
CTGGGGAGagGTCATTTCCATCTCCATCACCAAGCAGCTCTTCCCCGGAA
GCCGCGTAGGCAGCATTGGCGCCAgcgtcatcttcctcctcccgggcctc
CGTCACTTCTTCTCTTGGATCGGCTGTCGGCCCGCGTCCCCCGAGAACAT
CAAGAAAATAtttgaggaaggagcggacTGCGCGGTCACGGTGGGGGGAG
TGGCCGAGATGTTCTTGGTGGGCGGGGACAAGGAGCGCCTGTATTTGAAG
AAACACAAGGGGTTCATTCGGGAGGCGATCAAAAACGGGGCGGATGTGGT
GCCCGTCTTCTGCTACGGAAATTCGAAGCTCTTCAGCGTGGTCGGGGAGA
GCAGCCGCCTCTCCATGGGGCTCCTCAAGCGGCTCTCCCGACGCATCAAA
GCCAGCGTCCTCATCTTCTACGGACGCCTTTGCCTGCCCATCCCCATCCG
GCACCCCTTGCTCTTCGTGGTGGGGAAACCGCTCCCCGTGGTCCAGAAGG
ACGCTCCTtccaaggaggagatcgcCGCTATGCACGCCCTGTTTTGCGAG
AAGGTAGAGGAATTGTACTACAAATTTAGACCCGAATGGGAGACTCGCCC
CCTCTCCATTGAGTGAATGACGCCGCAAGCTGAAACGAATGTTTCCACGA
ACGGGGTAGCAAACTCTCAGACCCATTCTagccccccctcgtccccagGT
GTCCAATATAAGGCAGCGGGAGGCAAAATGATCAGGGTCGCCCTGGCGGC
CCGGGACAACGGCGACATGTCGCTCTTtcgggaggcgctggccatgCTGA
CGATGGGCGTGATGATGAGCTGGTATTACCTGGTGGTgatcctctccctt
ctctgcgTGGCGGGCCTCTTTTTTCCGACCTGGCGCGTCGTGGCAGGGAC
GGCCTTCGTGCTCATGTGGAGTGCGGCCTTCCTACCCCTGGACTACCAGG
GATGGGACGCGTTTTGCaattccttccttttcaagcTCTGGCGGGACTAC
TTCCACTACGAATACATTCTGGAGGAAGCAATCGACCCGAAGAAGCGGTA
TTTGTTCGCAGAAATGCCCCACGGCATCTTCCCCTGGGGAGagGTCATTT
CCATCTCCATCACCAAGCAGCTCTTCCCCGGAAGCCGCGTAGGCAGCATT
GGCGCCAgcgtcatcttcctcctcccgggcctcCGTCACTTCTTCTCTTG
GATCGGCTGTCGGCCCGCGTCCCCCGAGAACATCAAGAAAATAtttgagg
aaggagcggacTGCGCGGTCACGGTGGGGGGAGTGGCCGAGATGTTCTTG
GTGGGCGGGGACAAGGAGCGCCTGTATTTGAAGAAACACAAGGGGTTCAT
TCGGGAGGCGATCAAAAACGGGGCGGATGTGGTGCCCGTCTTCTGCTACG
GAAATTCGAAGCTCTTCAGCGTGGTCGGGGAGAGCAGCCGCCTCTCCATG
GGGCTCCTCAAGCGGCTCTCCCGACGCATCAAAGCCAGCGTCCTCATCTT
CTACGGACGCCTTTGCCTGCCCATCCCCATCCGGCACCCCTTGCTCTTCG
TGGTGGGGAAACCGCTCCCCGTGGTCCAGAAGGACGCTCCTtccaaggag
gagatcgcCGCTATGCACGCCCTGTTTTGCGAGAAGGTAGAGGAATTGTA
CTACAAATTTAGACCCGAATGGGAGACTCGCCCCCTCTCCATTGAGTGAA
TGACGCCGCAAGCTGAAACGAATGTTTCCACGAACGGGGTAGCAAACTCT
CAGACCCATTCTagccccccctcgtccccagGTGTCCAATATAAGGCAGC
GGGAGGCAAAATGATCAGGGTCGCCCTGGCGGCCCGGGACAACGGCGACA
TGTCGCTCTTtcgggaggcgctggccatgCTGACGATGGGCGTGATGATG
AGCTGGTATTACCTGGTGGTgatcctctcccttctctgcgTGGCGGGCCT
CTTTTTTCCGACCTGGCGCGTCGTGGCAGGGACGGCCTTCGTGCTCATGT
GGAGTGCGGCCTTCCTACCCCTGGACTACCAGGGATGGGACGCGTTTTGC
aattccttccttttcaagcTCTGGCGGGACTACTTCCACTACGAATACAT
TCTGGAGGAAGCAATCGACCCGAAGAAGCGGTATTTGTTCGCAGAAATGC
CCCACGGCATCTTCCCCTGGGGAGagGTCATTTCCATCTCCATCACCAAG
CAGCTCTTCCCCGGAAGCCGCGTAGGCAGCATTGGCGCCAgcgtcatctt
cctcctcccgggcctcCGTCACTTCTTCTCTTGGATCGGCTGTCGGCCCG
CGTCCCCCGAGAACATCAAGAAAATAtttgaggaaggagcggacTGCGCG
GTCACGGTGGGGGGAGTGGCCGAGATGTTCTTGGTGGGCGGGGACAAGGA
GCGCCTGTATTTGAAGAAACACAAGGGGTTCATTCGGGAGGCGATCAAAA
ACGGGGCGGATGTGGTGCCCGTCTTCTGCTACGGAAATTCGAAGCTCTTC
AGCGTGGTCGGGGAGAGCAGCCGCCTCTCCATGGGGCTCCTCAAGCGGCT
CTCCCGACGCATCAAAGCCAGCGTCCTCATCTTCTACGGACGCCTTTGCC
TGCCCATCCCCATCCGGCACCCCTTGCTCTTCGTGGTGGGGAAACCGCTC
CCCGTGGTCCAGAAGGACGCTCCTtccaaggaggagatcgcCGCTATGCA
CGCCCTGTTTTGCGAGAAGGTAGAGGAATTGTACTACAAATTTAGACCCG
AATGGGAGACTCGCCCCCTCTCCATTGAGTGAATGACGCCGCAAGCTGAA
ACGAATGTTTCCACGAACGGGGTAGCAAACTCTCAGACCCATTCTagccc
cccctcgtccccagGTGTCCAATATAAGGCAGCGGGAGGCAAAATGATCA
GGGTCGCCCTGGCGGCCCGGGACAACGGCGACATGTCGCTCTTtcgggag
gcgctggccatgCTGACGATGGGCGTGATGATGAGCTGGTATTACCTGGT
GGTgatcctctcccttctctgcgTGGCGGGCCTCTTTTTTCCGACCTGGC
GCGTCGTGGCAGGGACGGCCTTCGTGCTCATGTGGAGTGCGGCCTTCCTA
CCCCTGGACTACCAGGGATGGGACGCGTTTTGCaattccttccttttcaa
gcTCTGGCGGGACTACTTCCACTACGAATACATTCTGGAGGAAGCAATCG
ACCCGAAGAAGCGGTATTTGTTCGCAGAAATGCCCCACGGCATCTTCCCC
TGGGGAGagGTCATTTCCATCTCCATCACCAAGCAGCTCTTCCCCGGAAG
CCGCGTAGGCAGCATTGGCGCCAgcgtcatcttcctcctcccgggcctcC
GTCACTTCTTCTCTTGGATCGGCTGTCGGCCCGCGTCCCCCGAGAACATC
AAGAAAATAtttgaggaaggagcggacTGCGCGGTCACGGTGGGGGGAGT
GGCCGAGATGTTCTTGGTGGGCGGGGACAAGGAGCGCCTGTATTTGAAGA
AACACAAGGGGTTCATTCGGGAGGCGATCAAAAACGGGGCGGATGTGGTG
CCCGTCTTCTGCTACGGAAATTCGAAGCTCTTCAGCGTGGTCGGGGAGAG
CAGCCGCCTCTCCATGGGGCTCCTCAAGCGGCTCTCCCGACGCATCAAAG
CCAGCGTCCTCATCTTCTACGGACGCCTTTGCCTGCCCATCCCCATCCGG
CACCCCTTGCTCTTCGTGGTGGGGAAACCGCTCCCCGTGGTCCAGAAGGA
CGCTCCTtccaaggaggagatcgcCGCTATGCACGCCCTGTTTTGCGAGA
AGGTAGAGGAATTGTACTACAAATTTAGACCCGAATGGGAGACTCGCCCC
CTCTCCATTGAGTGA

Synonyms

Publications