rna75, rna75 (mRNA) Nannochloropsis gaditana

Overview
Namerna75
Unique Namerna75
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1892
Alignment locationCM002455.1:214987..216292 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101799g1.5695.mrna
Orig protein idgnl|cribi|Naga_101799g1.5695
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:214987..216292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101799g1gene73Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna75rna75-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30598.1cds75Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna75 ID=rna75|Name=rna75|organism=Nannochloropsis gaditana|type=mRNA|length=1892bp
ATGGCACAATGGAACACAGGGACGGACATGATTACGTCATATTTGGGAAG
AGCTACGATCTTCTGGCGGACGGCGTCACTCCTCCTCCTGTTTCTCTCAG
GGGACGGGCAACTCTTTGTTCATAGAAGCGCCAACTACAAGGGAACATGC
CGTGCAGATACCCTTTCGAATGTCTCCTACAAGGAAGTGGGCCTCGTCGA
TCGCCCTAGCCCGGGCAAAGTGGCCTACGGTGTAATGGTCTATCAACGAC
AGAACAAAACCGTGTCGGACGTCTTCGACCAATTTACCCGCCTCTTCGAT
GCCATATATTCCCCCAATTTCACCTGTGTGGTGCATGTGGATATCAAGAG
CGAGCCTGCCTTGATCGAAAAAATTACCGACTATGTGAAGAAGCACGCGC
CTCAGGCAAGCACGATCCCCAGTGTGAGCGTGAGTTGGGGGGGAATCACC
GTAGTGGAACGCACGCTGGCGCTGATGCAGGCCGCCTTGGAAAGCGACCC
GGAGTGGGAATATTTCGTCAACATCGGCCAGGAGGACTACCCCCTACAGA
GCCCTGCGGCCATCCAGGAGTATCTGGCCCATGCAGTGCCCCCCGCCACC
AATTTCATATATTGCTGGGACCTGCGCGGGCACGATTTCTTCGGGCAGTG
GGAGCACCACGAAGGACGCGTGTCGAAGGTGTTTGTCGACATGTTTGACG
GTAGAAGCCGCGAGGTCCGGGGCCTTCCCCGGTCCCCCCCCAAGGTGAGA
CAAGGGCACATGCACATGCACCAATACTTGTACAACGTCTCATTCCCTCT
TTCTCTTTCCCATTATGCCCACCTGCATGCCTCCCTCCACGACAGGAATA
CTCTTTCTACAAGAGCCTCCAGCAAACCGTCCTCTCCCGCGCCTTTGTGG
AGTCCGCCGTGCATGCCCCCGAGTCCCGTCGGCTCCTTCTGTACCTCGCC
ACGTCCGAAGCGCCGGATGAGATATTCTTCCCCACACTCCTCCACCTCCC
TTCCAACCGTGCCCACGCTGCCCGCGCCACCTGCAATAGCACCCTTCATT
TCTCCCACTGGATCCGCCCGGGGGGCAGTTGGCACCCCGAGTACCTCACC
CCATTGCACTTGCCCTTGCTCTTGGAAAAAATAAGGGCGTCTTCACCCTC
CTTCCCTGCATTTTGGGCGCGAAAATTCGACGTTGGGAAGGGCTCCAGCG
CCTTGATGGCCGCCCTCGACTATCTCCGGGAGTGTCGGCCTGCTAGGGAC
CAGGCCGCCAAAAGCTTGGAGTGGGCGCCGGCGATCGTGTTCGCCAAGGA
AATGGGACAGCACATTGTGGACCGAGAGCTGAGGGACGGGGAAGACCCGC
AGTGCGCCTACCGCGTAGTGCGCGTGGGGGGAAAAGTGGTGACAGGGGAA
GACATGCTGCTCCATTTGGACAAAGCCCGGCGCAGTCAAGACGCCGAAGC
CATCATGCGTTTCTTAACGCACGTCGAGAATGAGATGAAGGCCTACAAGG
ACTATCACACCGACCCCCGCTGGCAGGTGGAGCGTCGACGGCTGCAGCAT
CACCGGCAGGTAGCGGAACGAGACTTACAGCCGGAACCCCGGATTTTGAG
GACTGCCGGGGTTCAGGCGAGCGAAGTGATTTTGTGAAAGCGGAAGAGAG
GGATGGGGTGATACTCCGTTGTGCAGTGGAAGGGCTCGGATGGGGTGGGG
GGGAAAAGTAAGATTTTGGGGGCAATACGCCGTGCACATGCATAAAATAT
CTGTAAAATCTACCTACCACGAGAGGAGAGTTGCAGTTTCTTCGCGATCA
AGCCTGAATGGAGGCCAGGGTTCCGAAAGAAACAAGTAATGCAAGGCTTC
CTGCGACGCAAGCGACGGAATACTAAGGCTTTACACCCCCCG
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protein sequence of rna75

>rna75-protein ID=rna75-protein|Name=rna75|organism=Nannochloropsis gaditana|type=polypeptide|length=387bp
SSSSSPTSPSSSVFPAPSPPTSSLPFLPITLSSSSLKFLAQEGPSLLIGA
AGQNHSGILLFLFLRLSLLHLNTTHPLHPSALPNLQRFHLLVRALMLFLT
HHSSSNGRDPRVPAHLLGEVSPLRWGESDTVTPQRIHLPSPSHRQEAENW
WVVCILHVQNALQRLRNLLRATVAALPPSRAHSVSASTSRGRGRKQPGGI
DREEKEKEEVQATEPTGCLFCNGNPGREGGRRTIVEAVEEAKVLRAVLTT
LTVGREAWVEGLYVDREGYDAMTALLEVGSQAMGREGREEVANLPFFGGC
FSCRTDPFLGVLLHSSSSPGPPSPSLPPSPSHWLQDSNLLTRYSPAQGAV
RSRQPNGQPLPAMLRVLLDVRLGATADGGEVLGIPHG
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mRNA from alignment at CM002455.1:214987..216292+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna75 ID=rna75|Name=rna75|organism=Nannochloropsis gaditana|type=mRNA|length=1306bp|location=Sequence derived from alignment at CM002455.1:214987..216292+ (Nannochloropsis gaditana)
tcctcttcttcttctcccacttctccgtcttcctcggtttttcctgctcc
ctcccccccgacctcctcccttcccttcctccccataaccctctcctcct
cgtcgctgaaGTTTCTCGCACAGGAagggccttccctcctcatcggtGCC
GCCGGGCAAAACCACAGCgggatcctcctcttcctcttcctccgcctctc
ccttctccacctgAACACCACCCACCCATTGCACCCGTCGGCCCTCCCGA
ACCTCCAGCGttttcacctcctcgtccgtgcCCTCATGCTCTTCCTAACC
CATCATTCGTCGTCGAATGGCCGGGACCCGCGCGTTCCGGCCCATCTCCT
TGGCGAGGTGTCGCCCCTGAGGTGGGGGGAGTCCGACACCGTGACCCCGC
AGAGgatccatcttccctccccatcgcaccgtcaggaggcagagaatTGG
TGGGTCGTGTGCATTCTCCACGTCCAAAACGCCTTGCAACGCTTGcgcaa
cctcctccgcgccacTGTCGCTGCTCTTCCACCTTCACGCGCCCACTCcg
tgtccgcctccacctctcgCGGGAGGGGCCGTAAGCAGCCGGGAGGGATT
GAccgggaggaaaaagagaaggaggaggttcaggCGACCGAGCCCACGGG
CTGTCTTTTCTGCAATGGGAacccggggagggagggagggaggaggacga
ttgTAGAAGCGGTGGAAGAGGCAAAGGTCCTGCGTGCGGTCTTGACCACC
TTAACTGTGGGGCGAGAAgcgtgggtggaggggctatatgtggaccggga
ggggtACGACGCAATGACCGCCTTGCTGGAGGTAGGAAGCCAGGcgatgg
ggcgggaaggccgcgaggaggtggccaacCTGCCTTTCTTCGGagggtgt
ttctcgtgccgCACCGACCCTttcctcggcgtcctcctccactcgtcgtc
ctccccggggcctccatctccatcgcttcctccctccccctcgcacTGGC
TCCAGGactccaacctcctcacccgtTACTCCCCCGCCCAAGGCGCCGTC
CGGTCCCGTCAGCCTAACGGCCAGCCGTTACCGGCGATGCTTCGAGTACT
ACTTGACGTTCGCCTGGGAGCAACAGctgacggaggggaggttcTGGGTA
TCCCACATGGGTGACCCGGAGCCGGTGATGATTTTGGAAGGACGGGCGGT
Ccggaaggggttggaggaggaggaggagggtaaagagttaaggaaaaagg
aaggaaggcgggagcgggaagcGATCGGGCGGTGGGACGCGGTGATGAAG
GCCATG
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Coding sequence (CDS) from alignment at CM002455.1:214987..216292+

>rna75 ID=rna75|Name=rna75|organism=Nannochloropsis gaditana|type=CDS|length=1164bp|location=Sequence derived from alignment at CM002455.1:214987..216292+ (Nannochloropsis gaditana)
tcctcttcttcttctcccacttctccgtcttcctcggtttttcctgctcc
ctcccccccgacctcctcccttcccttcctccccataaccctctcctcct
cgtcgctgaaGTTTCTCGCACAGGAagggccttccctcctcatcggtGCC
GCCGGGCAAAACCACAGCgggatcctcctcttcctcttcctccgcctctc
ccttctccacctgAACACCACCCACCCATTGCACCCGTCGGCCCTCCCGA
ACCTCCAGCGttttcacctcctcgtccgtgcCCTCATGCTCTTCCTAACC
CATCATTCGTCGTCGAATGGCCGGGACCCGCGCGTTCCGGCCCATCTCCT
TGGCGAGGTGTCGCCCCTGAGGTGGGGGGAGTCCGACACCGTGACCCCGC
AGAGgatccatcttccctccccatcgcaccgtcaggaggcagagaatTGG
TGGGTCGTGTGCATTCTCCACGTCCAAAACGCCTTGCAACGCTTGcgcaa
cctcctccgcgccacTGTCGCTGCTCTTCCACCTTCACGCGCCCACTCcg
tgtccgcctccacctctcgCGGGAGGGGCCGTAAGCAGCCGGGAGGGATT
GAccgggaggaaaaagagaaggaggaggttcaggCGACCGAGCCCACGGG
CTGTCTTTTCTGCAATGGGAacccggggagggagggagggaggaggacga
ttgTAGAAGCGGTGGAAGAGGCAAAGGTCCTGCGTGCGGTCTTGACCACC
TTAACTGTGGGGCGAGAAgcgtgggtggaggggctatatgtggaccggga
ggggtACGACGCAATGACCGCCTTGCTGGAGGTAGGAAGCCAGGcgatgg
ggcgggaaggccgcgaggaggtggccaacCTGCCTTTCTTCGGagggtgt
ttctcgtgccgCACCGACCCTttcctcggcgtcctcctccactcgtcgtc
ctccccggggcctccatctccatcgcttcctccctccccctcgcacTGGC
TCCAGGactccaacctcctcacccgtTACTCCCCCGCCCAAGGCGCCGTC
CGGTCCCGTCAGCCTAACGGCCAGCCGTTACCGGCGATGCTTCGAGTACT
ACTTGACGTTCGCCTGGGAGCAACAGctgacggaggggaggttcTGGGTA
TCCCACATGGGTGA
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Synonyms
Publications