rna7494, rna7494 (mRNA) Nannochloropsis gaditana

Overview
Namerna7494
Unique Namerna7494
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length393
Alignment locationCM002472.1:90639..91889 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101722g1.3648.mrna
Orig protein idgnl|cribi|Naga_101722g1.3648
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:90639..91889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101722g1gene7255Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7494rna7494-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23197.1cds7476Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7494 ID=rna7494|Name=rna7494|organism=Nannochloropsis gaditana|type=mRNA|length=393bp
GATGCCCGGCTTGTTCTCGGGTCAGGCACGGCAGGCGGGGGAGGAGGCGG
GGAAGGAGGAAGGGATAGAGGTCGCGCGACCGGTCCAGTGGAAGGACGGG
TGTAGCGCTTCCTGGATAGGAGAGGAGTTGGACGGCGCGGGGTATTCTCC
TGTTTCCCCTTCCTCCTTGGAAGAAGCCCAGCCGGCGCCCATGAGCGCGG
GTGTCTGCCTGTCCTCCTTCCCGCCCTCCTGCCGGCCTTCCCTCCCTTCC
TTCCTCAACCAGCACCTGCCGGTGCCTCCCTTGGAGCGGCAGACGAGTGG
TCTCTTGTACCACCCTTCCGGGAACCTGCCAGCCGGCACCTCCGCCCTGG
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCTCC
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protein sequence of rna7494

>rna7494-protein ID=rna7494-protein|Name=rna7494|organism=Nannochloropsis gaditana|type=polypeptide|length=171bp
LPPSHSPFLPPSLLASLPPFLQLSLRTSRGRPVRFSWLREAAPGQKGPEG
FLLLPQTSQRVGAVGERGRNGGQEGGGWTEERNIKGKVGTGETPGEEIEA
SSIDGRARGRDRGRDRGRDRGRDRGRDRGRDRGRDRGRDRGRDRGRDRGS
GRGRDRGRDRGSGRGSGRGRD
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mRNA from alignment at CM002472.1:90639..91889+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7494 ID=rna7494|Name=rna7494|organism=Nannochloropsis gaditana|type=mRNA|length=1251bp|location=Sequence derived from alignment at CM002472.1:90639..91889+ (Nannochloropsis gaditana)
ctccctccctcccactctcccttcctccctccctccctccttgcctccct
ccctcccttcctccagctttcTCTGCGAACGTCACGGGGGCGGCCGGTGC
GATTTTCCTGGCTGCGAGAAGCTGCACCAGGGCAAAAAGGGCCTGAGGga
tttcttcttttgccgcAAACATCACAAAGAGTGGGTGCGgtcggggaaag
aggaaggaatgggggtcaggaaggaggaggatggacggaggaaaggaaca
TCAAAGGGAAGGTTGGGACCGGGGAAACGCCGGGTGAAGAAATAGAGGCA
TCGAGTATTGATGGAAgagcgcgggggagggatagaggtAGGGATAGAGG
TAGGGATAGAGGTAGGGATAGAGGTAGGGATAGAGGTAGGGATAGAGGTA
GGGATAGAGGTAGGGATAGAGGTAGGGATAGAGGTAGGGATAGAGGTAGC
GGTAGAGGTAGGGATAGAGGTAGGGATAGAGGTAGCGGTAGAGGTAGCGG
TAGAGGTAGGGATTGAGAAAGGCTTAGAGGGAGTGACAGATGTAGGAAca
gagggagacagaggaagcgaaggtGAGAAATCGCACGAAGGGGGCGTTCA
ATGATGCTTTTGGTACTCATGAACGACAATTTTGTGCTTGAAAATTTTGA
CGGCCGGGTGGGGTCATAATAAACCGAATTGTGACAGAGGTGAGACGAAA
TGGACGTTGTCCCTTTGAAATTCATATGATTATgaaaggaaatggagcaG
GAATACTACAATGTGATGAGCCTTGGCTACGTCCCGTCGGGGCAGAAGTA
GGTACTTTAGATGGTATGAGAGACCttaaagaagaaggagggtagagAGA
ACTGTGCCAGGCCATAGGCTTGCTCTAGGTAGGAACAGTCTCGACCGTCC
GAGATAGTGATAGTTGTGAAACACATTCGACTAGGTGGTTTTGGTTTGGA
TGCAGAGGGCTCAGCTCTTTAAGTAAGTTCGACTTCGAGCTCGGTCGAAA
CCAGGCTCTCATTTAAGGAAATAAGGCTTCAAGTAAGTTAAGTAAGTAGG
AAAACGTCACGAAACAGAGCCGGACGGACGAGGGGACCCAGGAATTTTCC
TGCGGCAGGAACAGGAATTTTTCTGCGGTAGGAGAGGATGCTCAATTTTG
TCCAGGAGGGTACGCAAGAGAGTGTCTTGAGGGGAAATGAGCCTCGGATG
CGTGGGCGAGTTAAGGAGGCGCGAGTGCTGAGGTGCCAtgaacgaggggg
g
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Coding sequence (CDS) from alignment at CM002472.1:90639..91889+

>rna7494 ID=rna7494|Name=rna7494|organism=Nannochloropsis gaditana|type=CDS|length=516bp|location=Sequence derived from alignment at CM002472.1:90639..91889+ (Nannochloropsis gaditana)
ctccctccctcccactctcccttcctccctccctccctccttgcctccct
ccctcccttcctccagctttcTCTGCGAACGTCACGGGGGCGGCCGGTGC
GATTTTCCTGGCTGCGAGAAGCTGCACCAGGGCAAAAAGGGCCTGAGGga
tttcttcttttgccgcAAACATCACAAAGAGTGGGTGCGgtcggggaaag
aggaaggaatgggggtcaggaaggaggaggatggacggaggaaaggaaca
TCAAAGGGAAGGTTGGGACCGGGGAAACGCCGGGTGAAGAAATAGAGGCA
TCGAGTATTGATGGAAgagcgcgggggagggatagaggtAGGGATAGAGG
TAGGGATAGAGGTAGGGATAGAGGTAGGGATAGAGGTAGGGATAGAGGTA
GGGATAGAGGTAGGGATAGAGGTAGGGATAGAGGTAGGGATAGAGGTAGC
GGTAGAGGTAGGGATAGAGGTAGGGATAGAGGTAGCGGTAGAGGTAGCGG
TAGAGGTAGGGATTGA
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Synonyms
Publications