rna749, rna749 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna749
Unique Name	rna749
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2859
Alignment location	CM002456.1:331709..333747 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100035g6.3354.mrna
Orig protein id	gnl\|cribi\|Naga_100035g6.3354
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:331709..333747 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100035g6	gene719	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna749	rna749-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29890.1	cds749	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:331709..333747+
coding sequence from alignment at CM002456.1:331709..333747+

mRNA sequence

>rna749 ID=rna749|Name=rna749|organism=Nannochloropsis gaditana|type=mRNA|length=2859bp
GTTGATCCTGAGCAGCTTTTCTTTGCAACGAACCGCGCAAAATTTTATGA
CTTATTTTGAGAAAAACACCAATGCATGTTTTTAAGTTAATAGCATGCCA
GCATTAAGGGTGGAAAGGTAACAAGCTGTCCGCTTTTCGCTTATTTCACG
TTCACCAATTTTCTTCGCGTGGCTTCCCTCGCAAGCGCATTTGTATCGCG
TATGAGACATAAGTATTCGAGGACGTGGCGAGGAACCCACGTCCTTTTGA
TGTCCTTTTTTGTTCCAAGCTTTGTAAAGTGCAGGACGGTACATTTATCC
TCGTTGATTTTTGCGACTCAATAATCCAGTACTTAAAGTAAACGGCCATT
GAATTAAGTAGCACTGTGTCGAAGCCCGACAGGTGTCATGTCGCCCTACA
CGTGCTTCCCATTGCCTCCATCGAGATGCTACTGGACATATTATTCTCAA
CATGGTTTACTCACAAGTTCTGGGGCACATTACGTCATATTTTGAAAAAG
ATGCGTATAAGCTTCACAGCGCTCACCGCCATCGCGCTGGCGTGGGCTAC
TGACGCGCAGCAGGCAGGCGTTCAAGGCCGTTCCTCACGAGAACAAACTT
CACGGGATGGTTTTAAGCCCATCGATGACGGCGGCCGACGCTTGGATGCC
TTCGATGACCGCATGGCGGGTTATGAAGCCAAGGGTAAATATTGGGAGCA
GTGGGCGATCGATCATGGCTACGCCCCTGGGCCTGATTCGAAGTATGGCA
AAAAGCACGAAACCCAGCAGGCCCTCAATGATCGACTTCCAGAGACACTG
TCCAGTGAAGAACGGTGGGTTCCCATGGCGGCAAATGGCGCTCAGGAGGT
ATTCGGCGGTGCGTCGGCCAAAGAATTTGATACTGTCGTGGATATGGCTT
TCTATGAGAAAAAGGCCAGGGACCTGGAAGCCTGGGCGCGTCAAGAGGGT
AGGCTGCCCTCCTTCACTCACAAACAGCAACAGAAGCAGGAAATTGAGAC
GCCGGAAGAGGAAGACAGAGTCCGGGACGTGCCACGTCACCTGGCCGACG
CCACCCCGCCTGCACAGGAAGCTCTCACAAGCTATTACAAGGCCCTGGGC
GAATGGCAAAAGGCCTATTGGGAAGCGTATGCCAAACAGTGGGTAAACAT
TGGCGAGAGGCAAGGCTTTGTCCCCTCCGAGAAAAGCAACAGGCGTGCAG
CGACTGACGGGGACGACGACGATAGTGTGGATGTGCCCCGCCGGTTGGGC
GAGGAGGGGTCTGGGGATGCGTTCGACGAGCGCATGGAGGAATATAAGGC
GTCGGCAGCGTACTTGGCGGCTTTGGGCGAGTGGGAGAAGAACTATTGGA
CGGCCTACGGGGATGGTTGGGCGCACTGGGCGCAGGATCGAGGCTTCGCT
CCCTCCCCGAACTCCAACAGGTACGCACAGGTACAGGAGGACGACAAATC
CCTCAAGGACCAAGGATTTCTGAATCGTTTCGATGCCATGGTGGAACAAG
AATCCGCCTACTGGCGGGAGCAGTCAGAGAGCCGAAAGGAGAAAGGGGAG
GCGCGTGGTCAGGCCTGGCTTGATTGGGCCGTTCAGAGAGGCTACATGCC
CCCGCCAGAGGGCCCTGGGGAACCACGAGGCGGCTCCGATGCGGTCGCAC
CTAAGACCAAGGGAGGGAAAGGGGAGTACCAGGGAAGCCGACGCTTGGAT
GCTTTCGACGACCGGATGGCGCGATACGAAGCGATTGGGCAATTCGAGGC
GGAATACTGGAAAAAGAGGGGAAAGAGCTGGGAGCAATGGGCCATTGATC
AGGGTTATGCCCCTGGCCCGGACTCCAAATACCGGAAGCCAGCGGAGGAA
GACTTGGCATGGCAGCAGCAGCAGCAGCAGCAGCAAAAGCAACAACAGCC
TACTATGGCGGCGAACGAGGAGGGCCAGCCTATGCCCGTAGGAGGCTTGG
ATGACAAAGCCGAAGCCATCCGTGGGGATTTCTACAAGGCGGACGGCCGA
AACTGGGCGGAGTGGCTCCGTGCTCGAACCTTTGGGGAGGGTTCGGCGGA
GGAATATGCGCCCACTCAGGGTTACGAGGGAAAAGCTGGTGCGGCACACT
CTAGTGCCTACAAGATCGGGACGGATGTGGGGGCGGACGGAGCCATTTTG
CTCAATCAGGATATAGACCGGGCCGTGGAGGACGTCTATAAGCACCAGAC
TTGGATGGGACGGAGCACAGCGCGGGTCGTGAACGGGATGGAGAAGGGTG
CTGAGCACGCCTACGCTGCCGGAGAAAGGATCGTGTCCCGGGCCGAAAAC
CGCGTCGAAGATGCCGTGGAGGCCTATGATGCCACGGTAGACGACAGACC
TATTGGTGAAAAGACGGTGAAAGTACCAGCAGAGGAGCCTGTGGAGCAGC
CGGCGCAGGCACCCAAACAAAGGCACATGCGAGGTGCAGGCAAGTGAGGG
ACGCATGTACCTTGACGACACACAAGGATCCGATTTTTCCTTCAAAGGGG
CCCCTACCCTGCTTTTGCATGGATGCATGGTTTATGGAGTCATGAGCAAA
AAGAACACATGGTTGTGGAGAAACTGTAAAAGAGGACACGAAGCACAAAG
TGGCATGAAGCACACAACTGTAAAAGCAGCAGAAAGATAGGCACCCACTT
TCATATTTGAACGGCAGCAAAGGGATTGAACCTTTATAATCCAACTTTAT
GGATAAACGTGAGGTACAATTTGGCCCAGCGTTTGGGTAGAAGAAAAAAT
CACAGATTGAGCGTCAGGAATTCCCCAAAATTCTTTATTTTGACCGGATG
CACACCATCACGCCAATCAGACATCTAGGCCGAGATAAAGAACAAAAATA
GAATTTGGA

protein sequence of rna749

>rna749-protein ID=rna749-protein|Name=rna749|organism=Nannochloropsis gaditana|type=polypeptide|length=271bp
MPYINFASVLRHSFAHFSLTNISTTLRRKMNGRVDLDSLMRQVRCYRNVA
RVRADVIACIAQVRTLIPKVEKFIHNNGTESELLVLSGTVAINYQSRQYN
IPVEVYISEPYPEAPPRCYVRPTKEMDIKVGHRHVDRDGLIYLPYLHEWN
ARSHNVTELCAAMSSVFGLDPPVYAVRRGGGGGGGSVSPAPASFSTSLYP
GQMGSLGRQPTSQQPQPPLQARPSPPPAYESLTGPGGGGMEMGGEWKAEV
QVLPTNKRRPRQNGERRRSRF

mRNA from alignment at CM002456.1:331709..333747+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna749 ID=rna749|Name=rna749|organism=Nannochloropsis gaditana|type=mRNA|length=2039bp|location=Sequence derived from alignment at CM002456.1:331709..333747+ (Nannochloropsis gaditana)
GCCACACTTCTTTTTTTAGGACTTTGCCCCCTGCCCGAATACAAACTGAG
GGCGTGTTTCGATTAGGATGGGACGGGATTGcattcctctctttccggGA
TTCTACATCTAAAAACTTGCCGTCACGGTGGGTTCCGAAGCTTGTACAGT
ACGTGTTCCTGATGCCTTACATAAATTTTGCTTCCGTGCTCCGTCATTCG
TTCGCTCACTTTTCTCTCACAAACATAAGCACTACGCTCAGAAGGAAGAT
GAATGGGCGTGTGGATTTGGACAGTCTCATGCGCCAAGTCCGTTGCTACC
GGAACGTGGCCAGGGTCCGCGCCGATGTGATAGCCTGCATCGCCCAGGTA
GCTACCGTCCCTTGCTTTTCGTTTTCTTGGCGGCTTTAGCAGCGCGACGT
GATTTGACTTTGTTTAACTTTTTGGCTAAGTTTGTGCCTTCAATGTTTTT
ACGACCGCAAGTGCCGATTTCTAGTTGACAAGACTCTCATCGCTTCTATT
CGtacgcttcttcctttcacttTCCCCTGCTATGCCAGGTGCGCACGCTC
ATTCCCAAAGTGGAAAAGTTCATCCACAACAATGGCACGGAAAGCGAGCT
CTTGGTCCTGTCCGGTACAGTGGCAATCAATTATCAAAGCCGGCAGTACA
ATATTCCAGTCGAGGTGTACATCAGCGAGCCCTATCCCGAGGTAAGCCCC
GAGTGCGAGCTGGCTCCCCCACGTCGGGTTGTACGCCAACTCGGCCATCG
AGTAGGCAGGAAGGCTAAAAAAGTGCATTTCCCCCCTGAAAAAGCGTGAA
GAAATGCTTGCAAACGACCTTCTCCTGACATGGCGCTTttcgcctcccct
tctgcctcccctcaggcccccccccgctgctACGTGCGACCAACCAAGGA
GATGGACATCAAAGTCGGGCACCGGCACGTGGATCGAGACGGGCTCATAT
ATCTTCCCTACCTGCACGAATGGAACGCCCGTTCCCACAATGTGACAGAG
TTGTGTGCGGCCATGTCTAGCGTCTTCGGCTTGGACCCGCCCGTGTATGC
CGtgcggagagggggagggggcggagggggttcAGTCTCTCCGGCgccag
cctccttctcgacctCTCTCTACCCGGGACAAATGGGGTCGCTCGGTCGG
CAGCCGACAAgccagcagccgcagccgccCTTACAGGCCCGGCCGTCACC
GCCACCGGCTTACGAAAGCCTGACGGGtccgggtggggggggtATGGAaa
tggggggggaatggaaagcGGAGGTTCAAGTCCTGCCAACCAACAAGCGC
AGGCCGAGGCAAAACGGAGAGAGGCGGCGCAGCAGGTTCTAGACAAGACT
CACAGGGCCTTGAAAGGCCTCTACGGGCGGGTGTcgcgggagctggagga
ggaagaggagaagcaggtCGCTCTGCAAACGCACCGAAAAGAGGTCTTGG
CAAGTATGGGCGgcttgaagaagaagaaagaagaagcggaggagcggaTT
CGGAAAGTGATGGAAATGGACGGGCGTCTAGATGCTTGGAtcaaggagca
ggaggggcggccGCCTGTGGGCGTGGACGACATGATAGAAGCCGCagacc
ctccttccaggcaAATGCTGGAGTTGGTGGCGCAAAACGCAGCCATCGAG
GACGCCCTGTATCACCTTGACAAAGCTCTTACCAGAGGAAACATAGATCA
CCTCGtgtttttgaaaaaaattCGCGAACTTGCACGGGAGCAATTTATGT
GCGTCGCCCATGTCAACAAGATTTATCGGGCGCAGCAAGCCGCCCTTGTG
GCGGCGCGAGCGCCGCCAAGCCAGACAGGACAATTTGGAGGAGCTAGGTA
CCTTCCGAGTGGCAGCACATCGCCTCGGTGAATGTGGGGTTGTAAGTGGG
AAATTTGTATTGAACATGGGGACAGGTGGGTTTAGGGGATGAAACGGTAG
CCGATTTCTCCTTGACAGACAGTACCGAATAGTGGCACAGAAGCAATGCA
TTTtcaaaaataaaaaaatCAAGGCACGGAGGGATCGCG

Coding sequence (CDS) from alignment at CM002456.1:331709..333747+

>rna749 ID=rna749|Name=rna749|organism=Nannochloropsis gaditana|type=CDS|length=2448bp|location=Sequence derived from alignment at CM002456.1:331709..333747+ (Nannochloropsis gaditana)
ATGCCTTACATAAATTTTGCTTCCGTGCTCCGTCATTCGTTCGCTCACTT
TTCTCTCACAAACATAAGCACTACGCTCAGAAGGAAGATGAATGGGCGTG
TGGATTTGGACAGTCTCATGCGCCAAGTCCGTTGCTACCGGAACGTGGCC
AGGGTCCGCGCCGATGTGATAGCCTGCATCGCCCAGGTGCGCACGCTCAT
TCCCAAAGTGGAAAAGTTCATCCACAACAATGGCACGGAAAGCGAGCTCT
TGGTCCTGTCCGGTACAGTGGCAATCAATTATCAAAGCCGGCAGTACAAT
ATTCCAGTCGAGGTGTACATCAGCGAGCCCTATCCCGAGgcccccccccg
ctgctACGTGCGACCAACCAAGGAGATGGACATCAAAGTCGGGCACCGGC
ACGTGGATCGAGACGGGCTCATATATCTTCCCTACCTGCACGAATGGAAC
GCCCGTTCCCACAATGTGACAGAGTTGTGTGCGGCCATGTCTAGCGTCTT
CGGCTTGGACCCGCCCGTGTATGCCGtgcggagagggggagggggcggag
ggggttcAGTCTCTCCGGCgccagcctccttctcgacctCTCTCTACCCG
GGACAAATGGGGTCGCTCGGTCGGCAGCCGACAAgccagcagccgcagcc
gccCTTACAGGCCCGGCCGTCACCGCCACCGGCTTACGAAAGCCTGACGG
GtccgggtggggggggtATGGAaatggggggggaatggaaagcGGAGGTT
CAAGTCCTGCCAACCAACAAGCGCAGGCCGAGGCAAAACGGAGAGAGGCG
GCGCAGCAGGTTCTAGATGCCTTACATAAATTTTGCTTCCGTGCTCCGTC
ATTCGTTCGCTCACTTTTCTCTCACAAACATAAGCACTACGCTCAGAAGG
AAGATGAATGGGCGTGTGGATTTGGACAGTCTCATGCGCCAAGTCCGTTG
CTACCGGAACGTGGCCAGGGTCCGCGCCGATGTGATAGCCTGCATCGCCC
AGGTGCGCACGCTCATTCCCAAAGTGGAAAAGTTCATCCACAACAATGGC
ACGGAAAGCGAGCTCTTGGTCCTGTCCGGTACAGTGGCAATCAATTATCA
AAGCCGGCAGTACAATATTCCAGTCGAGGTGTACATCAGCGAGCCCTATC
CCGAGgcccccccccgctgctACGTGCGACCAACCAAGGAGATGGACATC
AAAGTCGGGCACCGGCACGTGGATCGAGACGGGCTCATATATCTTCCCTA
CCTGCACGAATGGAACGCCCGTTCCCACAATGTGACAGAGTTGTGTGCGG
CCATGTCTAGCGTCTTCGGCTTGGACCCGCCCGTGTATGCCGtgcggaga
gggggagggggcggagggggttcAGTCTCTCCGGCgccagcctccttctc
gacctCTCTCTACCCGGGACAAATGGGGTCGCTCGGTCGGCAGCCGACAA
gccagcagccgcagccgccCTTACAGGCCCGGCCGTCACCGCCACCGGCT
TACGAAAGCCTGACGGGtccgggtggggggggtATGGAaatgggggggga
atggaaagcGGAGGTTCAAGTCCTGCCAACCAACAAGCGCAGGCCGAGGC
AAAACGGAGAGAGGCGGCGCAGCAGGTTCTAGATGCCTTACATAAATTTT
GCTTCCGTGCTCCGTCATTCGTTCGCTCACTTTTCTCTCACAAACATAAG
CACTACGCTCAGAAGGAAGATGAATGGGCGTGTGGATTTGGACAGTCTCA
TGCGCCAAGTCCGTTGCTACCGGAACGTGGCCAGGGTCCGCGCCGATGTG
ATAGCCTGCATCGCCCAGGTGCGCACGCTCATTCCCAAAGTGGAAAAGTT
CATCCACAACAATGGCACGGAAAGCGAGCTCTTGGTCCTGTCCGGTACAG
TGGCAATCAATTATCAAAGCCGGCAGTACAATATTCCAGTCGAGGTGTAC
ATCAGCGAGCCCTATCCCGAGgcccccccccgctgctACGTGCGACCAAC
CAAGGAGATGGACATCAAAGTCGGGCACCGGCACGTGGATCGAGACGGGC
TCATATATCTTCCCTACCTGCACGAATGGAACGCCCGTTCCCACAATGTG
ACAGAGTTGTGTGCGGCCATGTCTAGCGTCTTCGGCTTGGACCCGCCCGT
GTATGCCGtgcggagagggggagggggcggagggggttcAGTCTCTCCGG
CgccagcctccttctcgacctCTCTCTACCCGGGACAAATGGGGTCGCTC
GGTCGGCAGCCGACAAgccagcagccgcagccgccCTTACAGGCCCGGCC
GTCACCGCCACCGGCTTACGAAAGCCTGACGGGtccgggtggggggggtA
TGGAaatggggggggaatggaaagcGGAGGTTCAAGTCCTGCCAACCAAC
AAGCGCAGGCCGAGGCAAAACGGAGAGAGGCGGCGCAGCAGGTTCTAG

Synonyms

Publications