rna7487, rna7487 (mRNA) Nannochloropsis gaditana

Overview
Namerna7487
Unique Namerna7487
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length435
Alignment locationCM002472.1:76408..77518 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101075g1.10525.mrna
Orig protein idgnl|cribi|Naga_101075g1.10525
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:76408..77518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101075g1gene7248Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7487rna7487-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23205.1cds7469Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7487 ID=rna7487|Name=rna7487|organism=Nannochloropsis gaditana|type=mRNA|length=435bp
ATGCTCGTTGCAATCCGACCGTGTCTTTTGAAACGCCATCGTGCACACTG
CGGCAACCGGTACGACGCAGGTATGGCCTCGGCGGCTTTCTCCCCGGAAA
CGCGAGAATTTTCTTTGCTCTGGTCATCGATCGCCGCAGGCACTCGAATG
GACATAATCTCACTATGCTGCACGAGGGCTTTAGTCTACGATGCCATCTT
TTGTGGTCATGAAATGCGCCTCGTCCGGAGAGACTGTTCTTGTTTACTAT
GCCAAAGTGACCTGGGGTCCAGCGCGACGATAGAGTACTTCGGGCCCTTT
CCACTGTCTGAAACGGTGGTATTGCCCCCCGTAAATGTCTTCATGATGTG
TCGAAGGCATGCCCTGCCTTTGGCTTCATGGAAGGCGACACACATTTTAG
TCCTTATCGATTTAATGCCGACTAAGGAGAATTAA
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protein sequence of rna7487

>rna7487-protein ID=rna7487-protein|Name=rna7487|organism=Nannochloropsis gaditana|type=polypeptide|length=147bp
MVSSLQRKIYDEIVPPSRRGRTQPRPTSHPSPPARRLIRKATHANGINGK
GSETTLSCLRCRRSKTRCDGKIPCERCFRLALSCHPQQLDKCRNHRQNGE
YSGVSDANTRYEELAEPGLSFRPPSLPSSLPSSLPPLLASPCNLLCP
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mRNA from alignment at CM002472.1:76408..77518+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7487 ID=rna7487|Name=rna7487|organism=Nannochloropsis gaditana|type=mRNA|length=1111bp|location=Sequence derived from alignment at CM002472.1:76408..77518+ (Nannochloropsis gaditana)
CTAGCGTACAGGGTACTGAGAGCGTCTTCAGAGACCCAGGACGTCGTTCA
TGGTGGACAGGGATGGTTTCTAGCCTCCAAAGGAAAATTTATGATGAGAt
agtgcctccctcccgacgaGGTCGGACTCAACCTCGTCCGACCTCgcatc
cttcccccccggcacgACGGCTCATCCGCAAAGCCACGCATGCCAACGGC
ATAAATGGTAAAGGATCAGAGACGACATTAAGTTGCCTGCGCTGTCGGCG
GAGCAAGGTACGTGAACGGAGAAGAGAGGCCGTCGGGAATTTGCTAGACT
CCGtatccctcctttgcctcaAAAAATTCCTttgtctcccccctttttcc
gtTCTCAGACAAGATGCGACGGGAAAATCCCTTGCGAGGTGCGTTTAATA
TATGGAGGGTCATGTCGGAGGGATGTTTGGGtcatggagagggaaaggct
gCAGACTTCTCtaaagagaaggggaaggggggaaggagcctTTATGCCAC
TCCGTCCTCGAGTGCTCCGAGCGATCTGTAAAAATGTTGGGAATGACGCC
CAGCGCACCAAGCGCGACAATTGCGTCTTGGCAAGCGCCTGGCCCCATTC
CCTCGGGTGAATGCTGGGGTTTTTGGAATTTAAACGTTGTGTGTACATGC
CTGAAACATACGAACGTGTCctcgcctttctttcttcctttcttctttcc
ctgacACGCGTCGACAACCATGCCATGCTCTTCAAAAGCGCGAAATCCGG
AGGGTCACTTCCTCAAGACCCACCGCAACCTTATTCTcaccatccccctc
tcccccccccaccggtGGAAACCTTTTCCGGGTATTTTACAGCGCTGCTT
tcgccttgccctctcctgccatcCCCAGCAGCTCGACAAATGCCGCAATC
ATAGACAAAATGGAGAGTACAGCGGCGTCTCGGACGCGAACACGCGTTAT
GAGGAGCTCGCCGAACCAGGTCTGTCatttcgccctccctccctcccatc
ctccctcccttcctctctccctccattaTTGGCTTCACCATGCAACCTGC
TTTGTCCCTAGGCACAtaaggggaagaaaagtcaACGCAagttctcctct
tttccccacTC
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Coding sequence (CDS) from alignment at CM002472.1:76408..77518+

>rna7487 ID=rna7487|Name=rna7487|organism=Nannochloropsis gaditana|type=CDS|length=1332bp|location=Sequence derived from alignment at CM002472.1:76408..77518+ (Nannochloropsis gaditana)
ATGGTTTCTAGCCTCCAAAGGAAAATTTATGATGAGAtagtgcctccctc
ccgacgaGGTCGGACTCAACCTCGTCCGACCTCgcatccttcccccccgg
cacgACGGCTCATCCGCAAAGCCACGCATGCCAACGGCATAAATGGTAAA
GGATCAGAGACGACATTAAGTTGCCTGCGCTGTCGGCGGAGCAAGACAAG
ATGCGACGGGAAAATCCCTTGCGAGCGCTGCTTtcgccttgccctctcct
gccatcCCCAGCAGCTCGACAAATGCCGCAATCATAGACAAAATGGAGAG
TACAGCGGCGTCTCGGACGCGAACACGCGTTATGAGGAGCTCGCCGAACC
AGGTCTGTCatttcgccctccctccctcccatcctccctcccttcctctc
tccctccattaTTGGCTTCACCATGCAACCTGCTTTGTCCCTAGATGGTT
TCTAGCCTCCAAAGGAAAATTTATGATGAGAtagtgcctccctcccgacg
aGGTCGGACTCAACCTCGTCCGACCTCgcatccttcccccccggcacgAC
GGCTCATCCGCAAAGCCACGCATGCCAACGGCATAAATGGTAAAGGATCA
GAGACGACATTAAGTTGCCTGCGCTGTCGGCGGAGCAAGACAAGATGCGA
CGGGAAAATCCCTTGCGAGCGCTGCTTtcgccttgccctctcctgccatc
CCCAGCAGCTCGACAAATGCCGCAATCATAGACAAAATGGAGAGTACAGC
GGCGTCTCGGACGCGAACACGCGTTATGAGGAGCTCGCCGAACCAGGTCT
GTCatttcgccctccctccctcccatcctccctcccttcctctctccctc
cattaTTGGCTTCACCATGCAACCTGCTTTGTCCCTAGATGGTTTCTAGC
CTCCAAAGGAAAATTTATGATGAGAtagtgcctccctcccgacgaGGTCG
GACTCAACCTCGTCCGACCTCgcatccttcccccccggcacgACGGCTCA
TCCGCAAAGCCACGCATGCCAACGGCATAAATGGTAAAGGATCAGAGACG
ACATTAAGTTGCCTGCGCTGTCGGCGGAGCAAGACAAGATGCGACGGGAA
AATCCCTTGCGAGCGCTGCTTtcgccttgccctctcctgccatcCCCAGC
AGCTCGACAAATGCCGCAATCATAGACAAAATGGAGAGTACAGCGGCGTC
TCGGACGCGAACACGCGTTATGAGGAGCTCGCCGAACCAGGTCTGTCatt
tcgccctccctccctcccatcctccctcccttcctctctccctccattaT
TGGCTTCACCATGCAACCTGCTTTGTCCCTAG
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Synonyms
Publications