rna7482, rna7482 (mRNA) Nannochloropsis gaditana

Overview
Namerna7482
Unique Namerna7482
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length204
Alignment locationCM002472.1:62951..63495 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101900g1.1588.mrna
Orig protein idgnl|cribi|Naga_101900g1.1588
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:62951..63495 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101900g1gene7242Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7482rna7482-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23210.1cds7464Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7482 ID=rna7482|Name=rna7482|organism=Nannochloropsis gaditana|type=mRNA|length=204bp
ATGGAACGTCTGCTCACAGAGGAGGAAAAGAAACGGCTGCAGGCATCGCG
ACCGTCCGGACGGGCTTTTCAGCTCAACGGCGCGACCGTTGATCCCTTCG
TCCTTTTAATGGCCGAGAAACGGAACGTTATTCGTCAGGAGTGTCTAGGA
TGGACCCTCGCGCTCTCTGGGGTCATCGCGCTGGGGGCGTACAGCAAAGA
GTGA
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protein sequence of rna7482

>rna7482-protein ID=rna7482-protein|Name=rna7482|organism=Nannochloropsis gaditana|type=polypeptide|length=164bp
MCGRSGMGKACSKLLAGVLKHDPPSLPPSPSSPSSSLPVEARCGFWQEKG
EGAMMKTRERGGEGGRDGGRWRGGRCIESLDFPSSLAGKRKTGKGAHARI
LNFRLNIQSFLAFPLHVCEATPSFLPPTLLLPSLPPSLPSSLPPDRLVTN
VSRFRGRGGRGRRD
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mRNA from alignment at CM002472.1:62951..63495-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7482 ID=rna7482|Name=rna7482|organism=Nannochloropsis gaditana|type=mRNA|length=545bp|location=Sequence derived from alignment at CM002472.1:62951..63495- (Nannochloropsis gaditana)
ATGTGTGGGCGATCGGGGATGGGAAAGGCTTGCTCTAAGCTGTTGGCAGG
TGTACTGAAGCATGACCCGCCCTCCCTCCCTCCCTCCCCTTCCTCCCCCT
CCTCCTCCCTCCCTGTGGAAGCCCGGTGTGGGTTCTGGCAGGAAAAGGGG
GAGGGCGCAATGATGAAGACAAGGGAGAGAGGAGGGGAGGGAGGGAGGGA
CGGAGGGAGGTGTGTTTGCTTCAAGTGTAGTTGATTGAAGAAGGGAGAGG
GAGGGAGAGAGGGAGGGGAGGGCGCTGCATTGAGAGCCTAGATTTCCCTT
CGTCATTGGCAGGAAAAAGAAAAACGGGAAAAGGAGCCCATGCACGGATT
TTGAATTTCCGTTTAAACATTCAATCTTTTCTCGCGTTTCCGTTACATGT
CTGCGAGGCCACCCCCTCATTTCTTCCTCCGACGCTCCTTCTTCCCTCCC
TCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCTGATCGCCTGGTCACCAAC
GTGTCGCGTTTTCGAGGGCGGGGAGGGCGGGGGAGACGGGACTGA
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Coding sequence (CDS) from alignment at CM002472.1:62951..63495-

>rna7482 ID=rna7482|Name=rna7482|organism=Nannochloropsis gaditana|type=CDS|length=990bp|location=Sequence derived from alignment at CM002472.1:62951..63495- (Nannochloropsis gaditana)
GGAGGGGAGGGCGCTGCATTGAGAGCCTAGATTTCCCTTCGTCATTGGCA
GGAAAAAGAAAAACGGGAAAAGGAGCCCATGCACGGATTTTGAATTTCCG
TTTAAACATTCAATCTTTTCTCGCGTTTCCGTTACATGTCTGCGAGGCCA
CCCCCTCATTTCTTCCTCCGACGCTCCTTCTTCCCTCCCTCCCTCCCTCC
CTCCCTTCCTCCCTCCCTCCTGATCGCCTGGTCACCAACGTGTCGCGTTT
TCGAGGGCGGGGAGGGCGGGGGAGACGGGACTGAATGTGTGGGCGATCGG
GGATGGGAAAGGCTTGCTCTAAGCTGTTGGCAGGTGTACTGAAGCATGAC
CCGCCCTCCCTCCCTCCCTCCCCTTCCTCCCCCTCCTCCTCCCTCCCTGT
GGAAGCCCGGTGTGGGTTCTGGCAGGAAAAGGGGGAGGGCGCAATGATGA
AGACAAGGGAGAGAGGAGGGGAGGGAGGGAGGGACGGAGGGAGGTGGAGG
GGAGGGCGCTGCATTGAGAGCCTAGATTTCCCTTCGTCATTGGCAGGAAA
AAGAAAAACGGGAAAAGGAGCCCATGCACGGATTTTGAATTTCCGTTTAA
ACATTCAATCTTTTCTCGCGTTTCCGTTACATGTCTGCGAGGCCACCCCC
TCATTTCTTCCTCCGACGCTCCTTCTTCCCTCCCTCCCTCCCTCCCTCCC
TTCCTCCCTCCCTCCTGATCGCCTGGTCACCAACGTGTCGCGTTTTCGAG
GGCGGGGAGGGCGGGGGAGACGGGACTGAATGTGTGGGCGATCGGGGATG
GGAAAGGCTTGCTCTAAGCTGTTGGCAGGTGTACTGAAGCATGACCCGCC
CTCCCTCCCTCCCTCCCCTTCCTCCCCCTCCTCCTCCCTCCCTGTGGAAG
CCCGGTGTGGGTTCTGGCAGGAAAAGGGGGAGGGCGCAATGATGAAGACA
AGGGAGAGAGGAGGGGAGGGAGGGAGGGACGGAGGGAGGT
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Synonyms
Publications