rna7481, rna7481 (mRNA) Nannochloropsis gaditana

Overview
Namerna7481
Unique Namerna7481
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length424
Alignment locationCM002472.1:62395..62870 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101900g2.1587.mrna
Orig protein idgnl|cribi|Naga_101900g2.1587
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:62395..62870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101900g2gene7241Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7481rna7481-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23209.1cds7463Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7481 ID=rna7481|Name=rna7481|organism=Nannochloropsis gaditana|type=mRNA|length=424bp
GCGTTGCCTCCCTCGACTTAAGGAGAAGCATGTGGGTGCCCCATCCTCAC
GTCTTTCCCGTCCTCCTCTTCTGTGGAGTCATGCTATACATCGCGCGCAG
ATTGAATCCCATTGTTCAATTCAAAGCATTATTGCGCAACACCCTCTTCG
CCCCCTTTGCCCCTGTCTCCTTCCGAGATGCCCTGGTCGGAGACCTTCTT
ACCTCCCTCCCCCTCGCCTTCGTCGACCTCGCCTATTCCCTCTCCTTCTC
TTTCTACTGGCTGGCGACTCTCTTCTCCCCACGAGGAAGGTATCCCTCCC
TCCATCCCTCCCTCCCTCCTCCCCTTCCTTCCTCTTGCTCTTCCCCCATT
GACCTGTCCCTATATCATCATTGATTCGATCCTTTCTGTGTGCAAAGCGT
TGTATTACGTCTTAACAGCAATCA
back to top

protein sequence of rna7481

>rna7481-protein ID=rna7481-protein|Name=rna7481|organism=Nannochloropsis gaditana|type=polypeptide|length=67bp
MERLLTEEEKKRLQASRPSGRAFQLNGATVDPFVLLMAEKRNVIRQECLG
WTLALSGVIALGAYSKE
back to top

mRNA from alignment at CM002472.1:62395..62870+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7481 ID=rna7481|Name=rna7481|organism=Nannochloropsis gaditana|type=mRNA|length=476bp|location=Sequence derived from alignment at CM002472.1:62395..62870+ (Nannochloropsis gaditana)
ATGGAACGTCTGCtcacagaggaggaaaagaaacggCTGCAGGCATCGCG
ACCGTCCGGACGGGCTTTtcaggtgaaggaggagggcgggagagagggag
ggagggcaggagggaggacgggaatagggaaaggaaatgtgggtggagag
ggagagggaaaggtcGATGACgcgcagggaaagagggagggatggaggga
gggagggtggggagggaaggattgtTCTCCATGTCCTGGAAGGATAGATG
TGAGGTGCTGGGAACCTGACGatccacttccttcctccctccctccctcc
ccccttccctcgctcaTGCCCTCGTCCCGTCCCCCGTCCGTTAGCTCAAC
GGCGCGACCGTTGATCCCTTCGTCCTTTTAATGGCCGAGAAACGGAACGT
TATTCGTCAGGAGTGTCTAGGATGGACCCTCGCGCTCTCTGGGGTCATCG
CGCTGGGGGCGTACAGCAAAGAGTGA
back to top

Coding sequence (CDS) from alignment at CM002472.1:62395..62870+

>rna7481 ID=rna7481|Name=rna7481|organism=Nannochloropsis gaditana|type=CDS|length=408bp|location=Sequence derived from alignment at CM002472.1:62395..62870+ (Nannochloropsis gaditana)
ATGGAACGTCTGCtcacagaggaggaaaagaaacggCTGCAGGCATCGCG
ACCGTCCGGACGGGCTTTtcagCTCAACGGCGCGACCGTTGATCCCTTCG
TCCTTTTAATGGCCGAGAAACGGAACGTTATTCGTCAGGAGTGTCTAGGA
TGGACCCTCGCGCTCTCTGGGGTCATCGCGCTGGGGGCGTACAGCAAAGA
GTGAATGGAACGTCTGCtcacagaggaggaaaagaaacggCTGCAGGCAT
CGCGACCGTCCGGACGGGCTTTtcagCTCAACGGCGCGACCGTTGATCCC
TTCGTCCTTTTAATGGCCGAGAAACGGAACGTTATTCGTCAGGAGTGTCT
AGGATGGACCCTCGCGCTCTCTGGGGTCATCGCGCTGGGGGCGTACAGCA
AAGAGTGA
back to top
Synonyms
Publications