rna7476, rna7476 (mRNA) Nannochloropsis gaditana

Overview
Namerna7476
Unique Namerna7476
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length624
Alignment locationCM002472.1:44472..45502 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101006g1.4582.mrna
Orig protein idgnl|cribi|Naga_101006g1.4582
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:44472..45502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101006g1gene7236Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7476rna7476-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23214.1cds7458Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7476 ID=rna7476|Name=rna7476|organism=Nannochloropsis gaditana|type=mRNA|length=624bp
GAGACCGTGCGCCTGATGTTTGGTGACCGAGAATCACTGCTTTCCTCATG
GCATCGATTTCGTCATGCGTCCTTCCCTCCCTCCTTCCCCCCCGGCCTCC
CTCCCGCCCTCCCTCCAGGGCTACCCCAACGAGCTGGCTTTGTGCCCCGA
CAAGTTCAACTGCCCGCGCCGGATGAACGCGGTGATCATCATGCGCTTCT
ACACCTCCGACCCGGACCTGCCGGAGGCCAACAGCAAGACCGATCCCTTG
AGCGCGAACAATCCCCGATTGTTTGGTTATGAGGCGCCCCCGACCGTCGA
GAAACGGGCGAACAACAAATGGCGCGAACGCTGGAAGCTCATCGACACCT
GCGACCAGTCCAGACCTACCCGGTTCACGAATGTATGTTGCCCCTCCCTC
CCTCCCTCCCTCTCTCCCCCCAGCCGATCGAAGAAACCCCACATCTGTTT
ACCTGCCTCCCAACCTGTATGCAAGCTGCCCTCTCGTATCGCTCCCGTGC
AAGCCCTCTTTCATCCCCCTTAACCCCCCATGCCTTCTCTGCATGCCGTT
ATACGAGTCGGCAAAGGAAGGCCATAAATTCCCAGCGGAATCCACATGCA
AGCTGCGTCCCCTAACCCTCCCTC
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protein sequence of rna7476

>rna7476-protein ID=rna7476-protein|Name=rna7476|organism=Nannochloropsis gaditana|type=polypeptide|length=128bp
MGGFLGLCSSLLVPKATHTNALDQSFGRCWGNIIRRCNGTPAAPTASSSL
SSPLCWRNWRDSRGSERWAGLSVEHVEEGEERVIEHREGEPRGGHGINEK
SLPFAGRGRDVRCRRWPAVTGEVRVERL
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mRNA from alignment at CM002472.1:44472..45502+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7476 ID=rna7476|Name=rna7476|organism=Nannochloropsis gaditana|type=mRNA|length=1031bp|location=Sequence derived from alignment at CM002472.1:44472..45502+ (Nannochloropsis gaditana)
ATGGGAGGCTTTCTCGGTCTGTGCTCGTCtctggtgggagggcgccggAC
gcgcctccgtcccctcgAATGACCATTGGGAAAAAACGGGACGATTGAGG
TGGTGAGACAATATCCCTAAACGGAACAAAAAGGGGTTTAGCATACAGTG
CTAAACGTGGCGATAGCGGTTGTTAGGATGGTTGGGATAGACTCCTAAAC
GTGACGATTAGTAGATACTCCGATTCCTCCCCTGACGTGCCacacttcct
tccttccctccctccctccctccctcctctctccctacctccctccagct
GGTCCCGAAAGCCACGCACACGAATGCTCTTGACCAAAGCTTCGGGTCTG
CGCGGCTCATTTGCTCCGCTCAGGACCGCGCGGCCGACGCCTGTCGCAAC
CCCGGCGTGTTGAAGGAGGTGTTGGGGAAATATTATCCGAgtgagtggga
gggagggagggagggagggagggaaggaggggcggggttTCCTCGACGTt
ccgtcccccttcctggTGCTCGGAGGGCGCGTGGTGTCATGTTCTTTTTT
GTCGTTTGTACCATTGCTTTATCGATCGACCTTGAGGATTAAGGAAGGTC
TTATTTGGCCCCCTCATCCCTTCGCCCTGGTCTTTGgccgtccttcctca
tcctcttcccccgaaCTCGCCTCGTCTTTTGCCGACTGCTCACACCTTCC
TTTTcgtgtcttccttcctcatcacctcATACCTATCATGGCCACTCAGA
GGTGCAATGGTACACCTGCAGCTCCGACGGCGAGCTCGTCCCTGTCAAGT
CCACTTTGTTGGAGAAATTGGAGGGACAGTAGAGGGAGCGAGCGATGGGC
GGGTTTGTCGGtggagcacgtggaggaaggcgaggagcgCGTGATCGAAC
ACCGAGAGGGGGAGCCCCGGGGGGGTCATGGAATCAATGAAAAAAGCCTT
CCTTTtgcggggagaggacgcgacGTGCGGTGCAGAAGGTGGCCTGCGGT
CACTGGAGAGGTACGGGTAGAGAGACTAtga
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Coding sequence (CDS) from alignment at CM002472.1:44472..45502+

>rna7476 ID=rna7476|Name=rna7476|organism=Nannochloropsis gaditana|type=CDS|length=1548bp|location=Sequence derived from alignment at CM002472.1:44472..45502+ (Nannochloropsis gaditana)
ATGGGAGGCTTTCTCGGTCTGTGCTCGTCtctgctGGTCCCGAAAGCCAC
GCACACGAATGCTCTTGACCAAAGCTTCGGGAGGTGTTGGGGAAATATTA
TCCGAAGGTGCAATGGTACACCTGCAGCTCCGACGGCGAGCTCGTCCCTG
TCAAGTCCACTTTGTTGGAGAAATTGGAGGGACAGTAGAGGGAGCGAGCG
ATGGGCGGGTTTGTCGGtggagcacgtggaggaaggcgaggagcgCGTGA
TCGAACACCGAGAGGGGGAGCCCCGGGGGGGTCATGGAATCAATGAAAAA
AGCCTTCCTTTtgcggggagaggacgcgacGTGCGGTGCAGAAGGTGGCC
TGCGGTCACTGGAGAGGTACGGGTAGAGAGACTAtgaATGGGAGGCTTTC
TCGGTCTGTGCTCGTCtctgctGGTCCCGAAAGCCACGCACACGAATGCT
CTTGACCAAAGCTTCGGGAGGTGTTGGGGAAATATTATCCGAAGGTGCAA
TGGTACACCTGCAGCTCCGACGGCGAGCTCGTCCCTGTCAAGTCCACTTT
GTTGGAGAAATTGGAGGGACAGTAGAGGGAGCGAGCGATGGGCGGGTTTG
TCGGtggagcacgtggaggaaggcgaggagcgCGTGATCGAACACCGAGA
GGGGGAGCCCCGGGGGGGTCATGGAATCAATGAAAAAAGCCTTCCTTTtg
cggggagaggacgcgacGTGCGGTGCAGAAGGTGGCCTGCGGTCACTGGA
GAGGTACGGGTAGAGAGACTAtgaATGGGAGGCTTTCTCGGTCTGTGCTC
GTCtctgctGGTCCCGAAAGCCACGCACACGAATGCTCTTGACCAAAGCT
TCGGGAGGTGTTGGGGAAATATTATCCGAAGGTGCAATGGTACACCTGCA
GCTCCGACGGCGAGCTCGTCCCTGTCAAGTCCACTTTGTTGGAGAAATTG
GAGGGACAGTAGAGGGAGCGAGCGATGGGCGGGTTTGTCGGtggagcacg
tggaggaaggcgaggagcgCGTGATCGAACACCGAGAGGGGGAGCCCCGG
GGGGGTCATGGAATCAATGAAAAAAGCCTTCCTTTtgcggggagaggacg
cgacGTGCGGTGCAGAAGGTGGCCTGCGGTCACTGGAGAGGTACGGGTAG
AGAGACTAtgaATGGGAGGCTTTCTCGGTCTGTGCTCGTCtctgctGGTC
CCGAAAGCCACGCACACGAATGCTCTTGACCAAAGCTTCGGGAGGTGTTG
GGGAAATATTATCCGAAGGTGCAATGGTACACCTGCAGCTCCGACGGCGA
GCTCGTCCCTGTCAAGTCCACTTTGTTGGAGAAATTGGAGGGACAGTAGA
GGGAGCGAGCGATGGGCGGGTTTGTCGGtggagcacgtggaggaaggcga
ggagcgCGTGATCGAACACCGAGAGGGGGAGCCCCGGGGGGGTCATGGAA
TCAATGAAAAAAGCCTTCCTTTtgcggggagaggacgcgacGTGCGGTGC
AGAAGGTGGCCTGCGGTCACTGGAGAGGTACGGGTAGAGAGACTAtga
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Synonyms
Publications