rna7472, rna7472 (mRNA) Nannochloropsis gaditana

Overview
Namerna7472
Unique Namerna7472
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length435
Alignment locationCM002472.1:35368..37569 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100553g3.8987.mrna
Orig protein idgnl|cribi|Naga_100553g3.8987
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:35368..37569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100553g3gene7232Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23219.1cds7454Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7472rna7472-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7472 ID=rna7472|Name=rna7472|organism=Nannochloropsis gaditana|type=mRNA|length=435bp
GGGTGCGGGTGAATGGGTGGAGACAAGGGTAGATTTGGAAAGCGAATAGG
GGGATGCGTGTGTACGCATGCGATTTTCTCGGACTTCCCTCCACCCGCCC
TATCTTCGGAAACTCTTATGTCCACCCTCGTAGTCCCAACTTTTTTCCTT
CCCTCCCTCTCTCCTTCCCTCCCTTCCTCCTTCTCTCCCTCTGTTGCTCA
GGGCCTTCGCTCCGCGCGGCCACTGCCCGCTGGTTCGAAGAGCACCCGAA
ACTCATGGCTACCATTAAGAGGAGGGAGGGGGGGAGAAGGGGGAGGGAGG
GCGGGAGGAAGGGGAGGAAGGAAGCCCTCCTCCTCTCAGAAGCGACATCC
AAAGGCCTCTTTATCAAGAGGGATGCCTGGGCGGACGACCTTGACCGGGA
TGACTGCACGCTCTGCAACAGGGTACCCTCCTCCT
back to top

protein sequence of rna7472

>rna7472-protein ID=rna7472-protein|Name=rna7472|organism=Nannochloropsis gaditana|type=polypeptide|length=584bp
MSAMRVCHFHLALLLLGGLQLAPAEIIKASVYGGNSSNLETLGVEGLPTN
MVVDRKGYTYLLGEYSSYKPNMFFIGRPLESRIAVEPFIAKLSPEGEVLW
VNDFLGRGSSEEDGTDYVASASGLALGPEGDCFVAGHFNSASLSFRTSYS
TNVTLVNPGFASGNAAIFVTKLDVAVGMVEWATLVSSPAGTRLDPNERLM
TALIVDNEGANLYLGGAYDPGEEALSYGRTYTINDLEVKSYGARDLLLAQ
LSPDTGKMNWVQTYGGTKDEAIASLAVNQKSTQVIFLANSASTKIDLGRR
VSPLSGYAGKRAEANTVILGTVEAHGSRRLPGGSVLGASAFGGTDAFNGG
KGMALKVDPSDAVYVLGNFHGKFQTGVDTKGGPVLLQSLQSDPSHPSPLA
DTDVFLAKYRVEGDPAFQLLWAQAFGGYGQDMAGGMDYGGEMIYLSVFSA
GQNITMGLVNPRRGMSGVFLENTFTGDYATTNVATVDGNNGAIRTAVNML
APACAAPPGSIIDGQSALALDQVGRLYMWGPRYQPDAGPDAILARTVCSE
TLPLSIGGDLLYHATISTLSCEPATKCTRVTGCV
back to top

mRNA from alignment at CM002472.1:35368..37569-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7472 ID=rna7472|Name=rna7472|organism=Nannochloropsis gaditana|type=mRNA|length=2202bp|location=Sequence derived from alignment at CM002472.1:35368..37569- (Nannochloropsis gaditana)
AGTCGTCCTTCTTACCATTTTATGATCGCATTTTGTAGGTTTTTGAACAG
CGACCCTTTTTGTCAAGGAAGTCAACCACCCACGTGGACGGATATCTTAT
ACTTTACATGAATGCTTTTCGAATCTTACGGGACCACTCCACTTGTTTCA
TAGCCACCTAGTGAAAAACAGGCACACATACGAAGATATCTACTCTGACA
AGTGGAGGTGTAACGCGGAGAGTGAGGAAGGCCTTGTCACATTAGCGCTG
ACGAAGGACATGTCAGCTATGCGGGTCTGTCATTTCCATCTCGCACTCCT
TCTTTTGGGTGGTCTCCAACTTGCACCGGCAGAAATTATCAAAGCATCAG
TCTATGGTGGAAACAGCTCTAATCTAGAGACTTTAGGTGTTGAAGGCCTA
CCCACGAATATGGTGGTCGATAGAAAAGGTTACACATACCTGCTGGGAGA
ATACTCGTCGTATAAACCAAACATGTTCTTCATTGGCCGCCCTCTTGAGT
CCAGAATTGCGGTTGAACCTTTCATAGCTAAGTTATCGCCCGAGGGCGAA
GTATTATGGGTCAATGACTTCCTAGGGAGGGGGTCTAGCGAGGAGGACGG
GACGGACTATGTAGCCTCGGCGAGCGGCCTCGCTCTGGGGCCCGAAGGAG
ATTGCTTTGTGGCAGGACATTTCAATTCAGCAAGCTTATCCTTCCGTACA
TCGTATAGCACCAATGTAACCCTGGTCAATCCGGGGTTTGCATCGGGCAA
TGCCGCCATCTTTGTCACCAAGCTGGATGTCGCGGTTGGGATGGTAGAGT
GGGCGACTCTGGTGAGCTCGCCTGCTGGGACTCGGCTTGATCCCAATGAG
CGATTGATGACGGCCCTCATTGTGGACAATGAAGGCGCTAATCTCTACTT
GGGCGGCGCGTACGACCCAGGGGAAGAAGCGCTTTCCTACGGACGCACCT
ATACAATAAACGACCTGGAAGTGAAATCTTACGGAGCTAGGGACTTGCTG
CTCGCACAGCTTTCGCCCGATACAGGAAAGATGAATTGGGTCCAAACATA
CGGTGGGACAAAAGACGAGGCAATCGCCTCCTTGGCAGTGAACCAGAAAT
CCACACAAGTAATCTTCCTCGCAAATTCCGCTTCCACCAAGATCGATCTA
GGAAGGCGCGTTTCTCCTTTATCCGGGTATGCAGGAAAGAGAGCAGAGGC
AAACACAGTAATATTAGGCACTGTGGAGGCTCACGGGTCGCGTCGGCTTC
CTGGTGGAAGTGTTTTGGGAGCTTCGGCGTTCGGGGGCACGGACGCGTTC
AACGGCGGGAAGGGCATGGCGTTGAAAGTGGACCCGTCGGACGCGGTTTA
CGTCCTGGGAAATTTCCACGGAAAATTCCAGACGGGCGTCGACACAAAAG
GAGGGCCTGTCCTTCTGCAGTCGCTGCAATCCGACCCCAGCCACCCTTCT
CCTTTGGCGGACACGGACGTGTTTTTAGCGAAGTACCGCGTGGAGGGAGA
CCCTGCTTTTCAGCTGCTTTGGGCCCAGGCTTTTGGTGGCTACGGCCAAG
ACATGGCGGGGGGAATGGATTACGGCGGGGAGATGATCTACCTGTCCGTC
TTCTCGGCCGGCCAGAACATCACTATGGGCCTCGTAAATCCGCGCCGGGG
AATGTCAGGGGTCTTCCTTGAAAATACCTTCACAGGTGACTATGCCACTA
CTAATGTGGCCACCGTCGACGGAAACAATGGAGCGATCAGGACCGCCGTC
AACATGCTTGCGCCTGCTTGCGCAGCGCCACCGGGCTCAATCATCGATGG
GCAGAGCGCGCTGGCTTTGGATCAGGTGGGACGTCTGTACATGTGGGGTC
CGCGCTACCAGCCCGATGCTGGGCCCGACGCAATTTTGGCACGGACCGTG
TGCTCCGAGACGCTGCCGCTTTCTATTGGAGGGGACTTGTTGTACCATGC
GACCATCTCAACCCTATCTTGCGAACCTGCAACGAAATGCACACGGGTTA
CGGGTTGCGTATGATAAATAATGACATGAATGCTACTTTCTTTGTTCCAT
CTCGAATCGACGTGCATCATGGTTCGAAAATTACATAGCTACCAATTGTA
TAGTGTCTTCCTTGAAAACGTGCTATTTTGAAGCTACGATGACAAGAGAC
AGGAACGAGAAAAAACCTCGAATGATAGAACAACTTGGATAATCTCCTCT
GC
back to top

Coding sequence (CDS) from alignment at CM002472.1:35368..37569-

>rna7472 ID=rna7472|Name=rna7472|organism=Nannochloropsis gaditana|type=CDS|length=1755bp|location=Sequence derived from alignment at CM002472.1:35368..37569- (Nannochloropsis gaditana)
ATGTCAGCTATGCGGGTCTGTCATTTCCATCTCGCACTCCTTCTTTTGGG
TGGTCTCCAACTTGCACCGGCAGAAATTATCAAAGCATCAGTCTATGGTG
GAAACAGCTCTAATCTAGAGACTTTAGGTGTTGAAGGCCTACCCACGAAT
ATGGTGGTCGATAGAAAAGGTTACACATACCTGCTGGGAGAATACTCGTC
GTATAAACCAAACATGTTCTTCATTGGCCGCCCTCTTGAGTCCAGAATTG
CGGTTGAACCTTTCATAGCTAAGTTATCGCCCGAGGGCGAAGTATTATGG
GTCAATGACTTCCTAGGGAGGGGGTCTAGCGAGGAGGACGGGACGGACTA
TGTAGCCTCGGCGAGCGGCCTCGCTCTGGGGCCCGAAGGAGATTGCTTTG
TGGCAGGACATTTCAATTCAGCAAGCTTATCCTTCCGTACATCGTATAGC
ACCAATGTAACCCTGGTCAATCCGGGGTTTGCATCGGGCAATGCCGCCAT
CTTTGTCACCAAGCTGGATGTCGCGGTTGGGATGGTAGAGTGGGCGACTC
TGGTGAGCTCGCCTGCTGGGACTCGGCTTGATCCCAATGAGCGATTGATG
ACGGCCCTCATTGTGGACAATGAAGGCGCTAATCTCTACTTGGGCGGCGC
GTACGACCCAGGGGAAGAAGCGCTTTCCTACGGACGCACCTATACAATAA
ACGACCTGGAAGTGAAATCTTACGGAGCTAGGGACTTGCTGCTCGCACAG
CTTTCGCCCGATACAGGAAAGATGAATTGGGTCCAAACATACGGTGGGAC
AAAAGACGAGGCAATCGCCTCCTTGGCAGTGAACCAGAAATCCACACAAG
TAATCTTCCTCGCAAATTCCGCTTCCACCAAGATCGATCTAGGAAGGCGC
GTTTCTCCTTTATCCGGGTATGCAGGAAAGAGAGCAGAGGCAAACACAGT
AATATTAGGCACTGTGGAGGCTCACGGGTCGCGTCGGCTTCCTGGTGGAA
GTGTTTTGGGAGCTTCGGCGTTCGGGGGCACGGACGCGTTCAACGGCGGG
AAGGGCATGGCGTTGAAAGTGGACCCGTCGGACGCGGTTTACGTCCTGGG
AAATTTCCACGGAAAATTCCAGACGGGCGTCGACACAAAAGGAGGGCCTG
TCCTTCTGCAGTCGCTGCAATCCGACCCCAGCCACCCTTCTCCTTTGGCG
GACACGGACGTGTTTTTAGCGAAGTACCGCGTGGAGGGAGACCCTGCTTT
TCAGCTGCTTTGGGCCCAGGCTTTTGGTGGCTACGGCCAAGACATGGCGG
GGGGAATGGATTACGGCGGGGAGATGATCTACCTGTCCGTCTTCTCGGCC
GGCCAGAACATCACTATGGGCCTCGTAAATCCGCGCCGGGGAATGTCAGG
GGTCTTCCTTGAAAATACCTTCACAGGTGACTATGCCACTACTAATGTGG
CCACCGTCGACGGAAACAATGGAGCGATCAGGACCGCCGTCAACATGCTT
GCGCCTGCTTGCGCAGCGCCACCGGGCTCAATCATCGATGGGCAGAGCGC
GCTGGCTTTGGATCAGGTGGGACGTCTGTACATGTGGGGTCCGCGCTACC
AGCCCGATGCTGGGCCCGACGCAATTTTGGCACGGACCGTGTGCTCCGAG
ACGCTGCCGCTTTCTATTGGAGGGGACTTGTTGTACCATGCGACCATCTC
AACCCTATCTTGCGAACCTGCAACGAAATGCACACGGGTTACGGGTTGCG
TATGA
back to top
Synonyms
Publications