rna7462, rna7462 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7462
Unique Name	rna7462
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	276
Alignment location	CM002471.1:656899..657987 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100384g3.4058.mrna
Orig protein id	gnl\|cribi\|Naga_100384g3.4058
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:656899..657987 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100384g3	gene7220	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7462	rna7462-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23230.1	cds7444	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:656899..657987+
coding sequence from alignment at CM002471.1:656899..657987+

mRNA sequence

>rna7462 ID=rna7462|Name=rna7462|organism=Nannochloropsis gaditana|type=mRNA|length=276bp
ATGGTCACGGAACGCGGTCGCCTATGTGATCGAATCTCCTTCTCCCGGAG
GCGCGAGACTTGTGTCGAGGAACAACTTGAAGGCCAGAGAGCCGATACCA
CTCTTGGAGGGTACTATAAAGAATATATGTATATAACTATACGTTCCCTT
TTTCGGGTCGAGCGTCAGGAGGACACTGTTTGTGAAGTCCCACGGACCCA
GGTCTCATTCATATTGTTGGTAGATTTCGAGTATCGGCGGTGGGCAGATT
CGTCGAATTTCTGTTGTTGGGGTTAA

protein sequence of rna7462

>rna7462-protein ID=rna7462-protein|Name=rna7462|organism=Nannochloropsis gaditana|type=polypeptide|length=362bp
MLVERGVKSNIPFNALHFILPSDRDLSAHCDLLCSYYFLCSTMKSYLGLC
LIGGVVTAAASSDSASYTSRSSKRGLHLKCRAVKDKTPALHRASIIPASH
SSCTPKGECLVFPSTTKGTTLMHRVRGGGPGIFRREDYFEETAVDRGRCL
ARMYTLTTLLYAVVAGVLSVPLPKYMPAVLAPFLLDSGDPVLARSFGVGA
VAVLLLSVVVVKNRTARVSFPLNATLLLSATGLKALLLAVLSYRFFPPSS
TSPYASFPRLFAFQTTVTQFAQALFAAYLPARAESLFPYLLTTVLTLVPA
RPLSLLLSLPLPSVMVAAALSFLASVIILLASQSSVQGGAHRNGWEAVAE
MVTTVLGGVGQG

mRNA from alignment at CM002471.1:656899..657987+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7462 ID=rna7462|Name=rna7462|organism=Nannochloropsis gaditana|type=mRNA|length=1089bp|location=Sequence derived from alignment at CM002471.1:656899..657987+ (Nannochloropsis gaditana)
ATGCTTGTTGAAAGAGGTGTCAAGTCGAACATCCCATTCAATGCCTTGCA
TTTCATCTTGCCTTCCGATCGTGACCTTTCCGCTCATTGTGATCTACTCT
GCTCGTATTATTTTCTCTGTAGTACAATGAAGTCTTATTTGGGCCTTTGC
CTAATCGGTGGAGTGGTGACCgcggccgcttcctccgacTCCGCATCCTA
TACTTCTCGCAGCAGCAAGCGCGGCCTCCATCTAAAATGCAGGGCTGTCA
AAGATAAAACGCCCGCCCTTCATCGTGCAAGTATTATACCTGCATCTCAC
TCATCCTGTACACCCAAGGGCGAGTGTCTGGTATTTCCAAGCACCACCAA
AGGCACGACGCTCATGCATCGGGtgcgaggcggggggcctgGAATTTTCC
GACGAGAAGACTACTTTGAAGAGACTGCCGTGGATCGAGGGCGCTGCTTG
GCCCGGATGTATACCCTGACGACACTCCTGTACGCTGTCGTTGCGGGTGT
GCTCTCCGTGCCTCTTCCCAAGTATATGCCTGCTGTCCTtgctccttttc
ttcttgacAGTGGGGATCCGGTGTTGGCGAGATCTTTCGGCGTCGGCGCC
gtggccgtcctcctcctgtccgtGGTCGTTGTCAAGAACCGCACAGCCCG
CGTCAGCTTCCCCCTGAACGCtactctcctcctcagcgcCACCGGCCTGA
AAGCCCTTCTGCTCGCTGTCCTCTCCTAccgtttcttccctccctcttcc
acgtccccgtacgcctctttccctcgtcTCTTCGCGTTTCAGACCACCGT
GACTCAGTTTGCTCAAgccctcttcgccgcctACTTGCCTGCGAGGGCCg
agtccctcttcccctacctcctcacCACCGTCCTAaccctcgtccccgcc
cgacccctctccctcctcctctcccttcccctcccctccgtgaTGGTAGC
GGCTGCCTtatccttcctcgcctctgTGATAATCCTGCTTGCGAGCCAGT
CCTCTGTCCAAGGCGGGGCACACCGCAacgggtgggaggcagtggcggaG
ATGGTCACGACAGTCCTAGGTGGGGTGGGCCAAGGCTGA

Coding sequence (CDS) from alignment at CM002471.1:656899..657987+

>rna7462 ID=rna7462|Name=rna7462|organism=Nannochloropsis gaditana|type=CDS|length=1089bp|location=Sequence derived from alignment at CM002471.1:656899..657987+ (Nannochloropsis gaditana)
ATGCTTGTTGAAAGAGGTGTCAAGTCGAACATCCCATTCAATGCCTTGCA
TTTCATCTTGCCTTCCGATCGTGACCTTTCCGCTCATTGTGATCTACTCT
GCTCGTATTATTTTCTCTGTAGTACAATGAAGTCTTATTTGGGCCTTTGC
CTAATCGGTGGAGTGGTGACCgcggccgcttcctccgacTCCGCATCCTA
TACTTCTCGCAGCAGCAAGCGCGGCCTCCATCTAAAATGCAGGGCTGTCA
AAGATAAAACGCCCGCCCTTCATCGTGCAAGTATTATACCTGCATCTCAC
TCATCCTGTACACCCAAGGGCGAGTGTCTGGTATTTCCAAGCACCACCAA
AGGCACGACGCTCATGCATCGGGtgcgaggcggggggcctgGAATTTTCC
GACGAGAAGACTACTTTGAAGAGACTGCCGTGGATCGAGGGCGCTGCTTG
GCCCGGATGTATACCCTGACGACACTCCTGTACGCTGTCGTTGCGGGTGT
GCTCTCCGTGCCTCTTCCCAAGTATATGCCTGCTGTCCTtgctccttttc
ttcttgacAGTGGGGATCCGGTGTTGGCGAGATCTTTCGGCGTCGGCGCC
gtggccgtcctcctcctgtccgtGGTCGTTGTCAAGAACCGCACAGCCCG
CGTCAGCTTCCCCCTGAACGCtactctcctcctcagcgcCACCGGCCTGA
AAGCCCTTCTGCTCGCTGTCCTCTCCTAccgtttcttccctccctcttcc
acgtccccgtacgcctctttccctcgtcTCTTCGCGTTTCAGACCACCGT
GACTCAGTTTGCTCAAgccctcttcgccgcctACTTGCCTGCGAGGGCCg
agtccctcttcccctacctcctcacCACCGTCCTAaccctcgtccccgcc
cgacccctctccctcctcctctcccttcccctcccctccgtgaTGGTAGC
GGCTGCCTtatccttcctcgcctctgTGATAATCCTGCTTGCGAGCCAGT
CCTCTGTCCAAGGCGGGGCACACCGCAacgggtgggaggcagtggcggaG
ATGGTCACGACAGTCCTAGGTGGGGTGGGCCAAGGCTGA

Synonyms

Publications