rna7453, rna7453 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7453
Unique Name	rna7453
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1133
Alignment location	CM002471.1:627785..630172 -

Link to JBrowse

Properties


Property Name	Value
Product	protein of unknown function DUF23
Orig transcript id	gnl\|cribi\|Naga_100830g1.5459.mrna
Orig protein id	gnl\|cribi\|Naga_100830g1.5459
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:627785..630172 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100830g1	gene7211	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23238.1	cds7435	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7453	rna7453-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:627785..630172-
coding sequence from alignment at CM002471.1:627785..630172-

mRNA sequence

>rna7453 ID=rna7453|Name=rna7453|organism=Nannochloropsis gaditana|type=mRNA|length=1133bp
ACCCAGCATGGGTGCCGGGCGCTCAATATCAAACCACTGCTCAAAATCGT
CCTCTCTATATTGACCTCAGTCTTCTCCTTTGTGCGCTGTGAGGGACCTC
TGAGACGGATTTCAATCTTTTTTTTTCAATGCATCAATACAGGCTATGTT
GCTCCTCTTTCGCCGTGGTGTCGCCGCCGCCTCCTTCTTCCCCCCCACGC
GTCGTACGCTTTTGGCCCCACATACAAAAGCTGTTGGTGGACTGGTCCGT
AGCGCGTCGTCGTCTCCTCTATCTTCCGCGTCACGAGTGAATAGACTGGG
AAGAATCTCGCTCTCTTCCTCCTCCTCGTCTGCTGCGGCCCAACCTCGCG
GTGTGACGGCGACTGCCGCTCTTCCCGGTTTGGCCGCTTTCTTTTTCCTC
CTGGCACAGACAGAGCATGAACCTACGGCAACCGCTGCGGCGGGATCAGG
GAGTCCTCCAGGCAACGTGTCCCCTTCGACCCACGCTCAGTACGCCCCCG
TCTACGACATTCCTATCGAAGGGAAAGCCTTCCCAGGGGAAGTGCCCGTC
TTTATCGAAGTCTCCAAGGGAAGTCGCATGAAGTACGAGTGGGACTCAAA
CGTCGGATTGCTCCGCTTGGACCGAGTGCTGCACTCTGCTGTCTTCTACC
CCTTCGACTACGGCTTCATTCCTCAGACCCTCTGCGACGACGGAGATCCC
CTCGATGTCTTGGTCATGGGCGACAGCTCCCTCGAACCCGGCTGCATCGT
CGACGTCCGGGTGCTGGGCTACATGGTCATGGAGGACGAGAAGGGGAAAG
ACGAAAACGGTCGCCGGTCGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCTTATTTAGCTGCTTCATCATCTCGGTTCTCCTTTCCTCCCTCTCTCC
TGCCCTCCCTCTCTCCCTCAGGTCCTTGCCGTGCTGACGAAGGACCCTCG
CATGCAAGAAATCAAAACCCTCCGAGACGTGCCCGAACACATCCTCCGTG
AGATCTCCTGCTTCTTCGAACAGTACAAGGTGCTGGAGCGAGAGAAGTGG
GTCAAGGTCGGCGGCTGGAAAGGTGAGGGAGGGGGGGGAGGGGGAAGGGA
GAAAATGAGGGAGGAAGGAAGGGAGGGAGGAAG

protein sequence of rna7453

>rna7453-protein ID=rna7453-protein|Name=rna7453|organism=Nannochloropsis gaditana|type=polypeptide|length=661bp
MTAHIFLTYTHTQGTNVITVSDKRLRHWLESFLHTKLNYCKKSGTYAPLQ
CQMANTSLRFQRSTCCSFYRRIAVLSFATLGLTLIPLFISTRSDVISYKL
LAFNLIEEAPLSNASDVVSITSIIHSSSVSPTDTTAPALPASLTPMIMPA
WTDNHRLYVLGGILTRDQIDDRLCMDVMVAGRRMFLQGGSGYGVKGLDED
WSLGRSHNVADPDEVVALGGKILCHVSGEGKDVEEEAVLVPTRSSLIPRT
NGLVHIIRCPVADAFPLDAGDVDVTVRVIFGSNQTQDSIKYGWEWPGSNG
TDAGRGQGKGGEERFRVVVPRATRHAGYFSYLPEASKLDPWQAQPDKLHL
CVAGLNTNFTCPLLDQTLEFVQYHTQQGVAHIHLGVDYPVGSESWKAVLR
VLRPYIDERKVSVMSTQSVRGPRSIGTEHFKLYFYASCLAYTKGLATWVG
IWDIDEFLVPRDEGASTIVQSLDTVLTRAGKTAKDVCFMSLTSFGFMEVK
ELRTIGNRTWAGQMFGHWRQAKNDDHWTKSIMSNRNAYFAGFHYPGACRD
VGGRRWGENPHANLWRINPSVLAMHHYRGKVSSVKNPKSNVAEDDEYGMR
LFPAVLDGLRSRKADEIVERECGFRPSMAVEYVEGPEEEGQVAVVGVPVK
GDKKERRLTES

mRNA from alignment at CM002471.1:627785..630172-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7453 ID=rna7453|Name=rna7453|organism=Nannochloropsis gaditana|type=mRNA|length=2388bp|location=Sequence derived from alignment at CM002471.1:627785..630172- (Nannochloropsis gaditana)
ATGACCGCTCACATATTCTTAACGTACACGCACACACAGGGCACAAACGT
GATTACCGTCAGTGACAAACGATTGCGACATTGGCTTGAATCATTCTTGC
ATACAAAGCTCAATTATTGCAAAAAAAGCGGGACCTATGCTCCTCTGCAG
TGTCAGATGGCAAACACGTCCCTCCGTTTCCAACGGTCTACATGCTGCAG
TTTTTATCGACGCATCGCAGTATTGTCCTTTGCCACTCTCGGCCTAACAC
TGATTCCATTATTTATTTCCACGCGCTCAGACGTGATCTCGTACAAACTC
CTAGCCTTCAATTTGATAGAGGAGGCTCCTTTAAGCAATGCCAGCGACGT
CGTCAGCATCACTTCCATTATCCATAGCAGCAGTGTATCCCCTACTGACA
CAACAGCGCCAGCACTACCTGCAAGCCTCACCCCTATGATCATGCCCGCT
TGGACGGACAACCATCGACTCTATGTGCTGGGAGGTATCTTGACACGGGA
CCAGATCGATGACCGTTTGTGCATGGACGTGATGGTGGCGGGTCGGCGCA
TGTTCCTCCAGGGTGGATCTGGCTACGGTGTGAAAGGCCTCGACGAGGAT
TGGTCATTGGGGAGGTCACACAACGTGGCAGATCCCGACGAGGTCGTGGC
GTTGGGTGGTAAAATACTATGTCATGTCAGCGGAGAGGGGAAAGACGTGG
AGGAAGAGGCCGTGCTTGTCCCGACAAGGAGCTCTCTCATCCCTCGCACA
AACGGACTCGTCCATATCATTCGTTGTCCTGTGGCAGATGCATTTCCGCT
GGACGCTGGAGACGTGGATGTGACTGTCCGGGTCATATTTGGCAGCAATC
AAACACAGGACTCCATCAAGTATGGATGGGAATGGCCCGGAAGCAACGGC
ACAGACGCAGGTCGAGGGCAGGGCAAGGGCGGCGAAGAGCGGTTCCGAGT
CGTCGTGCCACGCGCGACGCGTCACGCGGGCTACTTTAGCTATCTACCGG
AGGCTTCCAAACTGGATCCATGGCAAGCTCAGCCCGACAAACTGCACCTC
TGTGTGGCGGGACTGAACACAAACTTCACTTGTCCCCTGCTCGATCAGAC
GTTGGAGTTTGTCCAGTACCATACACAGCAAGGCGTGGCGCACATCCACC
TGGGAGTCGACTATCCTGTGGGGTCGGAGTCGTGGAAGGCCGTGCTGCGG
GTGCTGCGGCCTTACATAGACGAGCGAAAGGTATCCGTTATGTCGACACA
GAGCGTGCGAGGCCCTAGATCGATCGGGACGGAACATTTCAAGCTCTACT
TCTACGCCTCTTGTCTCGCCTACACCAAGGGCTTGGCTACGTGGGTGGGC
ATTTGGGACATCGACGAGTTCCTGGTACCACGTGACGAGGGCGCAAGCAC
GATTGTGCAATCGCTTGACACCGTGTTAACAAGGGCTGGGAAAACAGCGA
AGGACGTCTGTTTCATGTCTTTAACGTCATTTGGCTTCATGGAGGTCAAG
GAGCTCAGGACAATCGGCAACCGGACATGGGCGGGACAGATGTTTGGGCA
CTGGCGGCAAGCAAAAAATGACGACCATTGGACCAAGTCGATCATGTCCA
ACCGAAATGCCTACTTCGCTGGCTTCCACTACCCGGGAGCTTGCAGGGAC
GTAGGGGGTAGACGATGGGGCGAGAATCCGCACGCAAACCTGTGGCGTAT
CAATCCAAGCGTACTTGCCATGCATCACTACCGAGGGAAGGTATCGTCGG
TGAAAAACCCGAAGTCCAACGTCGCAGAAGACGACGAGTACGGCATGCGT
CTTTTTCCCGCGGTCTTGGACGGCCTACGGTCAAGGAAGGCAGACGAGAT
CGTGGAGAGGGAATGCGGCTTCCGTCCGTCCATGGCTGTCGAGTATGTAG
AGGGTCCTGAGGAGGAGGGACAGGTAGCCGTTGTGGGAGTGCCAGTGAAG
GGAGATAAGAAGGAGCGACGTTTGACAGAGTCTTAAGCATAGATGTGGGG
AAAAGAAGCAAGAATTGAGATATGCGTCGAAAGGCATGTCTCCTCTGCAT
TGTAGCATGGCTGTGCGACAGGCAAGAGATGCATACGTGTACAGGCGTGC
TAGTCAGGGGCTTGACAGGGGTTTGTGGTACACAACAGGAACACGAATAT
GCTGTGCGGTGCCAAGCCTGCGCATGAATGTCTGATGTTACTTCGGCATA
CTTGTCCTTACTTATGTAGGTTTGTTGCCATGTGTATCCCGTGGTTCGCT
GATCAGTTGCAGATCGAGTGTTCATCTGCTAAAATAATGACACATCTACC
AGCGCCTTTCCGAGGCAGCGACACGCATTTAATAAATGGAACAGTGAAGC
AGCCTTTGCCCCCTCGCTCCTGTCTATGACTGCATGGC

Coding sequence (CDS) from alignment at CM002471.1:627785..630172-

>rna7453 ID=rna7453|Name=rna7453|organism=Nannochloropsis gaditana|type=CDS|length=1986bp|location=Sequence derived from alignment at CM002471.1:627785..630172- (Nannochloropsis gaditana)
ATGACCGCTCACATATTCTTAACGTACACGCACACACAGGGCACAAACGT
GATTACCGTCAGTGACAAACGATTGCGACATTGGCTTGAATCATTCTTGC
ATACAAAGCTCAATTATTGCAAAAAAAGCGGGACCTATGCTCCTCTGCAG
TGTCAGATGGCAAACACGTCCCTCCGTTTCCAACGGTCTACATGCTGCAG
TTTTTATCGACGCATCGCAGTATTGTCCTTTGCCACTCTCGGCCTAACAC
TGATTCCATTATTTATTTCCACGCGCTCAGACGTGATCTCGTACAAACTC
CTAGCCTTCAATTTGATAGAGGAGGCTCCTTTAAGCAATGCCAGCGACGT
CGTCAGCATCACTTCCATTATCCATAGCAGCAGTGTATCCCCTACTGACA
CAACAGCGCCAGCACTACCTGCAAGCCTCACCCCTATGATCATGCCCGCT
TGGACGGACAACCATCGACTCTATGTGCTGGGAGGTATCTTGACACGGGA
CCAGATCGATGACCGTTTGTGCATGGACGTGATGGTGGCGGGTCGGCGCA
TGTTCCTCCAGGGTGGATCTGGCTACGGTGTGAAAGGCCTCGACGAGGAT
TGGTCATTGGGGAGGTCACACAACGTGGCAGATCCCGACGAGGTCGTGGC
GTTGGGTGGTAAAATACTATGTCATGTCAGCGGAGAGGGGAAAGACGTGG
AGGAAGAGGCCGTGCTTGTCCCGACAAGGAGCTCTCTCATCCCTCGCACA
AACGGACTCGTCCATATCATTCGTTGTCCTGTGGCAGATGCATTTCCGCT
GGACGCTGGAGACGTGGATGTGACTGTCCGGGTCATATTTGGCAGCAATC
AAACACAGGACTCCATCAAGTATGGATGGGAATGGCCCGGAAGCAACGGC
ACAGACGCAGGTCGAGGGCAGGGCAAGGGCGGCGAAGAGCGGTTCCGAGT
CGTCGTGCCACGCGCGACGCGTCACGCGGGCTACTTTAGCTATCTACCGG
AGGCTTCCAAACTGGATCCATGGCAAGCTCAGCCCGACAAACTGCACCTC
TGTGTGGCGGGACTGAACACAAACTTCACTTGTCCCCTGCTCGATCAGAC
GTTGGAGTTTGTCCAGTACCATACACAGCAAGGCGTGGCGCACATCCACC
TGGGAGTCGACTATCCTGTGGGGTCGGAGTCGTGGAAGGCCGTGCTGCGG
GTGCTGCGGCCTTACATAGACGAGCGAAAGGTATCCGTTATGTCGACACA
GAGCGTGCGAGGCCCTAGATCGATCGGGACGGAACATTTCAAGCTCTACT
TCTACGCCTCTTGTCTCGCCTACACCAAGGGCTTGGCTACGTGGGTGGGC
ATTTGGGACATCGACGAGTTCCTGGTACCACGTGACGAGGGCGCAAGCAC
GATTGTGCAATCGCTTGACACCGTGTTAACAAGGGCTGGGAAAACAGCGA
AGGACGTCTGTTTCATGTCTTTAACGTCATTTGGCTTCATGGAGGTCAAG
GAGCTCAGGACAATCGGCAACCGGACATGGGCGGGACAGATGTTTGGGCA
CTGGCGGCAAGCAAAAAATGACGACCATTGGACCAAGTCGATCATGTCCA
ACCGAAATGCCTACTTCGCTGGCTTCCACTACCCGGGAGCTTGCAGGGAC
GTAGGGGGTAGACGATGGGGCGAGAATCCGCACGCAAACCTGTGGCGTAT
CAATCCAAGCGTACTTGCCATGCATCACTACCGAGGGAAGGTATCGTCGG
TGAAAAACCCGAAGTCCAACGTCGCAGAAGACGACGAGTACGGCATGCGT
CTTTTTCCCGCGGTCTTGGACGGCCTACGGTCAAGGAAGGCAGACGAGAT
CGTGGAGAGGGAATGCGGCTTCCGTCCGTCCATGGCTGTCGAGTATGTAG
AGGGTCCTGAGGAGGAGGGACAGGTAGCCGTTGTGGGAGTGCCAGTGAAG
GGAGATAAGAAGGAGCGACGTTTGACAGAGTCTTAA

Synonyms

Publications