rna7445, rna7445 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7445
Unique Name	rna7445
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	642
Alignment location	CM002471.1:602462..603415 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101622g1.396.mrna
Orig protein id	gnl\|cribi\|Naga_101622g1.396
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:602462..603415 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101622g1	gene7203	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7445	rna7445-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23246.1	cds7427	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:602462..603415+
coding sequence from alignment at CM002471.1:602462..603415+

mRNA sequence

>rna7445 ID=rna7445|Name=rna7445|organism=Nannochloropsis gaditana|type=mRNA|length=642bp
ATGAGAGGGCCTGTGCGCAGCAAACGAAACGCCTCCTCCCCATCTAACCC
CACGAAACGTTCGACCAAAAAGTCACGAAACGCAGTATTGGCACCGTCCA
CTACCAGCCTCACCGGGGCAAGCTCCTCGAAAGCCAACCCTCCCTCCCTC
CCTCCCTCCCTCCTTCCCTCCCCTCCTCCCCCCCCGCCCGCCCTTCAAGC
CAAAGCAGACACCATCCATCGTCTTCTAGACTATCTCTACCCGAGTCCGC
CCATCCCTTTGGATCACTACGACAATTATTCCCTCCTTGTCGCCGTCATC
CTTTCCGCCCAAACCACGGATGGGAAGGTCAATCAAGTCACGCCCGCCCT
CTTCCAGCAGGCGCCCACACCCAAGCACTTGGCCGCCCTCCCCCACGCCC
TCGTCCTCGACCTGATCCGACCAGTGGGTCTGGCCCCTGGGAAGGCGCGA
AATCTGATCAATATGGCCCAGAAGCTGGTTGACGACTTTGGGGGAGAGAG
CTCGAGTCCCTCCCCGGCGTCGGGCACAAGACGGCCTCCGTGGTCATGTC
CGAAGCCTTTGCCTACCCTGCCTTCCCCGTCGACACGCACGTGCACCGAT
GCGCCCGCCGGTGGGGCCTCTGCCAGGACACGCCGGACGTGA

protein sequence of rna7445

>rna7445-protein ID=rna7445-protein|Name=rna7445|organism=Nannochloropsis gaditana|type=polypeptide|length=317bp
MKEAGKIKTIVVQGVIVVLAALCLFWTMNYASAQVSLEKKGNSQLRTSDI
SPFKMAMEGSEGFFDDIRDAGWKRLMERIQTTPSCAASCAAEPAAHWYQN
NWEPNFTCLDERRIGRWGDGGKWVCDPRRIVAKAEAGHGCLVYSVGSNND
FSFEESILRDISPACEIHTFDPTIGDRPAKPLTDEQITFHPWGLSNKNDG
KYKTLQTIMQDLDHGNREIDILKIDCEGCEWSSYESWLDKGIRIRQILIE
LHQGTEGATPVPAMKFMESLSQRGFVIFHKEPNIQWAGGACIEYAFVRLA
SPEARLAGIVNNTRSRT

mRNA from alignment at CM002471.1:602462..603415+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7445 ID=rna7445|Name=rna7445|organism=Nannochloropsis gaditana|type=mRNA|length=954bp|location=Sequence derived from alignment at CM002471.1:602462..603415+ (Nannochloropsis gaditana)
ATGAAAGAAGCTGGTAAGATCAAAACGATCGTAGTACAAGGCGTCATCGT
GGTGCTTGCGGCCTTATGTCTTTTCTGGACGATGAATTACGCGTCCGCGC
AGGTTTCcctggaaaaaaaaggtaaTTCCCAATTACGGACGAGCGACATC
AGTCCCTTCAAGATGGCCATGGAGGGTAGTGAAGGATTCTTCGACGATAT
CCGAGATGCAGGATGGAAACGGCTCATGGAACGAATTCAGACCACTCCTT
CGTGTGCAGCATCTTGCGCGGCCGAGCCGGCAGCACACTGGTATCAAAAC
AACTGGGAGCCGAATTTCACGTGTCTTGACGAGCGCCGCATCGGCCGTTG
GGGGGATGGTGGTAAGTGGGTATGCGATCCACGTCGCATCGTTGCGAAGG
CGGAGGCTGGGCATGGCTGCCTTGTGTACAGTGTGGGCTCCAACAACGAC
TTCAGCTTCGAGGAGAGTATCTTGCGCGATATCTCCCCTGCGTGTGAAAT
TCATACTTTCGACCCGACCATCGGGGACCGTCCCGCCAAGCCGCTGACGG
ATGAACAGATCACCTTTCACCCCTGGGGTCTCTCCAACAAAAACGACGGG
AAGTACAAGACTCTGCAGACCATCATGCAGGACCTGGACCATGGGAACAG
AGAGATCGACATCCTCAAGATCGATTGCGAGGGCTGCGAATGGTCCAGCT
ACGAGAGCTGGCTCGACAAAGGGATTCGCATTCGCCAGATATTGATTGAA
TTGCATCAGGGTACTGAGGGGGCGACTCCGGTCCCAGCCATGAAATTCAT
GGAATCTCTGTCGCAGCGAGGGTTTGTGATCTTCCACAAAGAGCCCAATA
TTCAATGGGCCGGAGGCGCATGTATAGAATACGCGTTTGTGAGGCTTGCG
AGTCCCGAGGCACGCCTTGCAGGAATTGTGAACAACACCAGGAGTAGGAC
TTAA

Coding sequence (CDS) from alignment at CM002471.1:602462..603415+

>rna7445 ID=rna7445|Name=rna7445|organism=Nannochloropsis gaditana|type=CDS|length=954bp|location=Sequence derived from alignment at CM002471.1:602462..603415+ (Nannochloropsis gaditana)
ATGAAAGAAGCTGGTAAGATCAAAACGATCGTAGTACAAGGCGTCATCGT
GGTGCTTGCGGCCTTATGTCTTTTCTGGACGATGAATTACGCGTCCGCGC
AGGTTTCcctggaaaaaaaaggtaaTTCCCAATTACGGACGAGCGACATC
AGTCCCTTCAAGATGGCCATGGAGGGTAGTGAAGGATTCTTCGACGATAT
CCGAGATGCAGGATGGAAACGGCTCATGGAACGAATTCAGACCACTCCTT
CGTGTGCAGCATCTTGCGCGGCCGAGCCGGCAGCACACTGGTATCAAAAC
AACTGGGAGCCGAATTTCACGTGTCTTGACGAGCGCCGCATCGGCCGTTG
GGGGGATGGTGGTAAGTGGGTATGCGATCCACGTCGCATCGTTGCGAAGG
CGGAGGCTGGGCATGGCTGCCTTGTGTACAGTGTGGGCTCCAACAACGAC
TTCAGCTTCGAGGAGAGTATCTTGCGCGATATCTCCCCTGCGTGTGAAAT
TCATACTTTCGACCCGACCATCGGGGACCGTCCCGCCAAGCCGCTGACGG
ATGAACAGATCACCTTTCACCCCTGGGGTCTCTCCAACAAAAACGACGGG
AAGTACAAGACTCTGCAGACCATCATGCAGGACCTGGACCATGGGAACAG
AGAGATCGACATCCTCAAGATCGATTGCGAGGGCTGCGAATGGTCCAGCT
ACGAGAGCTGGCTCGACAAAGGGATTCGCATTCGCCAGATATTGATTGAA
TTGCATCAGGGTACTGAGGGGGCGACTCCGGTCCCAGCCATGAAATTCAT
GGAATCTCTGTCGCAGCGAGGGTTTGTGATCTTCCACAAAGAGCCCAATA
TTCAATGGGCCGGAGGCGCATGTATAGAATACGCGTTTGTGAGGCTTGCG
AGTCCCGAGGCACGCCTTGCAGGAATTGTGAACAACACCAGGAGTAGGAC
TTAA

Synonyms

Publications