rna7442, rna7442 (mRNA) Nannochloropsis gaditana

Overview
Namerna7442
Unique Namerna7442
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length570
Alignment locationCM002471.1:595681..596838 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101341g1.9406.mrna
Orig protein idgnl|cribi|Naga_101341g1.9406
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:595681..596838 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101341g1gene7200Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7442rna7442-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23249.1cds7424Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7442 ID=rna7442|Name=rna7442|organism=Nannochloropsis gaditana|type=mRNA|length=570bp
CGTGCAGTGACATTGATTGAGCGCGGTACAAAACAGGTGCACGCTCAACC
ACACGTTGTGGCGCGTTTCGGGCAGCAACGACCTGCGTCCGGCCTGATTC
TTAGGGGTCACGAACATCCATCCCCATCCAGGAGCCGACATCGCCGGGCG
GCCAAGGGCAGTGACCATGGCACCGGCTTTTATCTCCTCCCCTTCCTCCC
CTCCGTCTCTGCCAGAACCCCGTGGTCGGCCACCAGGGTCCGCGTCAGGT
ATAAGGCTCCGTCCTCCTGCCATTCCTCCCTCCCGCCTCCCCCCCTTACC
CCCCCCGCGCCCTTCTTTTTCTTTTTTCATTCTTCTGCTTCACTTTCTGG
GACACCGCATCGACGACACATTCTTTCTTTCCGTTCCTGAACCGTGCCCT
CCTCCCTTTCCATCGGTAGGCTTCCTGCTGTCCGAGGGCCGTCGGACTTT
TCGGGCCCTCCCCACGTTGTTTTCCAGCGCCAGCCCCTGGGGGTTCCGCA
CTTTTCTCATCTCCATCCTCGTCTTGCTTGCGCTCGGTAGATTTGAAAGG
AGGGAGGGAGAAAGGGAGGG
back to top

protein sequence of rna7442

>rna7442-protein ID=rna7442-protein|Name=rna7442|organism=Nannochloropsis gaditana|type=polypeptide|length=192bp
MQFEKRPDFLGDDSTARSTVVCLGPPQHFLREALNATVLPSPAVLAKMGH
NAPKIPNLRHEPGRVQRVPECLTSLVLDLHNTSPPPGCPTPRPCNAFRPV
PLSWCARCGQRDVREHHWPQIGPGGNNGRRSAQAPSPATSGYRLAVKAGR
PGLRRGGPPPRSSTDPAMPGRRGRRLHLGRLPPPTLPGSELG
back to top

mRNA from alignment at CM002471.1:595681..596838-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7442 ID=rna7442|Name=rna7442|organism=Nannochloropsis gaditana|type=mRNA|length=1158bp|location=Sequence derived from alignment at CM002471.1:595681..596838- (Nannochloropsis gaditana)
ATGCAGTTTGAAAAAAGACCCGACTTTCTGGGGGATGACAGCACTGCCAG GAGCACCGTAGTTTGCCTTGGTCCTCCACAGCACTTTCTCCGTGAGGCTT TGAATGCTACAGTGCTTCCTTCGCCCGCTGTACTGGCTAAAATGGGGCAT AATGCGCCAAAAATCCCCAGTACCTGATAAACGTTCTTGGTAAGAGTTGC AGTCACTGCTGAGATGACGCAATGCAAGAAGCCTTCACCCTTCCTACGGA AGAGAGTTCACCGGCTGCTTTTCTTCCTTACTGGAGCCTGTGCTTTTGAG TTTTAGAAAGAATTGAATCGTCCAATTTTAACTTCACCACGACAGATCTC AGGCATGAGCCTGGTCGAGTTCAGCGCGTTCCAGAGTGCTTGACCTCCCT GGTACTGGATTTGCACAATACATCGCCACCCCCAGGATGCCCCACCCCAA GACCCTGCAATGCATTTCGTCCGGTTCCTCTTTCTTGGTGCGCCCGGTGT GGGCAAAGGGACGTACGCGAACATCATTGGCCCCAAATTGGTAGGTACTC CTTCCCCGACGTTTCACGACGTCTTTGTCGGGCATGTGCTTCCTGGGCAG GAACTTTCGTCTGGGGTGGTCTAAATCCGTTTTCCCCCTACTTCCTCTTC CTCCCTCCCTGTCGACTTTCCCCTTTTGGTCCCTCGGCCCTACCGCTTAA TACATATATATGTATATATATTATCATCATAATAATGCAATAAATCAATA CACACCAATAATATACCAACGAACCGCTCTTCCTCCCTCCTCCCTCCTCC CTCCTCCCTTCTCCTCCCTCCTCCCTCCTCCCTCCTCCCTCCTCCCTCCT CCCTCCTCCTCCCTTCTCCTCCCTTCTCCTCTCTCCTCCTCCCTCTTGCT TCCTCCTCCCCCCTCCTCACCCCTGCTTCTCCCCCTCATCCAGGGCCTGG AGGTAATAACGGCCGGCGATCTGCTCAGGCACCAAGCCCGGCTACATCCG GGTATCGCCTCGCAGTTAAAGCAGGGCGCCCTGGTCTCCGACGAGGTGGT CCTCCCCCTCGTTCTTCAACGGATCCAGCAATGCCAGGAAGGAGGGGGAG GAGGTTACATCTTGGACGGCTTCCCCCGCCGACTCTCCCAGGCTCGGAGC TTGGATGA
back to top

Coding sequence (CDS) from alignment at CM002471.1:595681..596838-

>rna7442 ID=rna7442|Name=rna7442|organism=Nannochloropsis gaditana|type=CDS|length=1737bp|location=Sequence derived from alignment at CM002471.1:595681..596838- (Nannochloropsis gaditana)
GGCCTGGAGGTAATAACGGCCGGCGATCTGCTCAGGCACCAAGCCCGGCT
ACATCCGGGTATCGCCTCGCAGTTAAAGCAGGGCGCCCTGGTCTCCGACG
AGGTGGTCCTCCCCCTCGTTCTTCAACGGATCCAGCAATGCCAGGAAGGA
GGGGGAGGAGGTTACATCTTGGACGGCTTCCCCCGCCGACTCTCCCAGGC
TCGGAGCTTGGATGAATCTCAGGCATGAGCCTGGTCGAGTTCAGCGCGTT
CCAGAGTGCTTGACCTCCCTGGTACTGGATTTGCACAATACATCGCCACC
CCCAGGATGCCCCACCCCAAGACCCTGCAATGCATTTCGTCCGGTTCCTC
TTTCTTGGTGCGCCCGGTGTGGGCAAAGGGACGTACGCGAACATCATTGG
CCCCAAATTGATGCAGTTTGAAAAAAGACCCGACTTTCTGGGGGATGACA
GCACTGCCAGGAGCACCGTAGTTTGCCTTGGTCCTCCACAGCACTTTCTC
CGTGAGGCTTTGAATGCTACAGTGCTTCCTTCGCCCGCTGTACTGGCTAA
AATGGGGCATAATGCGCCAAAAATCCCCAGGCCTGGAGGTAATAACGGCC
GGCGATCTGCTCAGGCACCAAGCCCGGCTACATCCGGGTATCGCCTCGCA
GTTAAAGCAGGGCGCCCTGGTCTCCGACGAGGTGGTCCTCCCCCTCGTTC
TTCAACGGATCCAGCAATGCCAGGAAGGAGGGGGAGGAGGTTACATCTTG
GACGGCTTCCCCCGCCGACTCTCCCAGGCTCGGAGCTTGGATGAATCTCA
GGCATGAGCCTGGTCGAGTTCAGCGCGTTCCAGAGTGCTTGACCTCCCTG
GTACTGGATTTGCACAATACATCGCCACCCCCAGGATGCCCCACCCCAAG
ACCCTGCAATGCATTTCGTCCGGTTCCTCTTTCTTGGTGCGCCCGGTGTG
GGCAAAGGGACGTACGCGAACATCATTGGCCCCAAATTGATGCAGTTTGA
AAAAAGACCCGACTTTCTGGGGGATGACAGCACTGCCAGGAGCACCGTAG
TTTGCCTTGGTCCTCCACAGCACTTTCTCCGTGAGGCTTTGAATGCTACA
GTGCTTCCTTCGCCCGCTGTACTGGCTAAAATGGGGCATAATGCGCCAAA
AATCCCCAGGCCTGGAGGTAATAACGGCCGGCGATCTGCTCAGGCACCAA
GCCCGGCTACATCCGGGTATCGCCTCGCAGTTAAAGCAGGGCGCCCTGGT
CTCCGACGAGGTGGTCCTCCCCCTCGTTCTTCAACGGATCCAGCAATGCC
AGGAAGGAGGGGGAGGAGGTTACATCTTGGACGGCTTCCCCCGCCGACTC
TCCCAGGCTCGGAGCTTGGATGAATCTCAGGCATGAGCCTGGTCGAGTTC
AGCGCGTTCCAGAGTGCTTGACCTCCCTGGTACTGGATTTGCACAATACA
TCGCCACCCCCAGGATGCCCCACCCCAAGACCCTGCAATGCATTTCGTCC
GGTTCCTCTTTCTTGGTGCGCCCGGTGTGGGCAAAGGGACGTACGCGAAC
ATCATTGGCCCCAAATTGATGCAGTTTGAAAAAAGACCCGACTTTCTGGG
GGATGACAGCACTGCCAGGAGCACCGTAGTTTGCCTTGGTCCTCCACAGC
ACTTTCTCCGTGAGGCTTTGAATGCTACAGTGCTTCCTTCGCCCGCTGTA
CTGGCTAAAATGGGGCATAATGCGCCAAAAATCCCCA
back to top
Synonyms
Publications