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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100460g3.10046.mrna |
| Orig protein id | gnl|cribi|Naga_100460g3.10046 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002471.1 | supercontig | CM002471.1:586432..587409 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7437 ID=rna7437|Name=rna7437|organism=Nannochloropsis gaditana|type=mRNA|length=2532bp
TTTACCAATGACTTAAGCGTGTGTGTGCGCCCTCGAATGCATGATACTTC
GATGCAATCGAGTCATTGACATTTCTCTCATGTCTCCTACCTTTTCACAC
GTACATTTCTAGCCATGAGACCCATCTCCTGCCGCATTCCGGGCATCGGT
ACTTTTCTCTTTCAGGATGACTCTGGCACCTCTGCCGTCATGACCCGCCC
TCCATACACATGCCTTCCGTCAGAAACCCAAGAGCAAATGAAAACAGAGG
CTTATGCAGCTGTCCTGGCAGTCTGTGGGATGATGGCGCCGGGGGACAAA
GTCGCGTTGCTCACGACAGTATTGCGGGCGTCAAAGACGTACCGGAATCG
GTATGGGCTGAGGAAAGCATTGTTTGGCCTCCGTCCAGTAGACCTGGAGG
GCATGGAAACGACAGTATGGCAGAGGACAGACGATGACGAGGCCAACACC
CAGTCCATCTCTCATCCATCTGCTCTTCGTAAGCGGGACAGAAGTGACCA
GAATTCCGTGCTAAGCGAGGAAAGAGCAGCACATGATTCGAAATGCCCAC
CGCCCCAGCAGCCCCAAGAAGCAATATATCAAAACATTGGCGCCGTCATG
AAGCATACCAGTGAAGGGAATAAGAGAAGAATGCATCTGCACAGGTCCTC
TCCCCTACATGACACACCTAACAAGGGAAAGCCTACTCCGTGGGAAAAGC
TCGCTGTCCCACTTACCCCCGTCTTGCCTTCTGCGAGCGGCTCTTTCTGG
ATCAGTATCGACAAGAATCAGCGTCGAAAACGCACAAGCTTCCGCCGCGC
TTCTCGGTCGTACCGGGCCAAAATCTTCAAGGTGACATACGAGCTTATCC
AGGCGGTCGTCGAGAAGTTCTGTCCAGGCGTAGGGCGGCTCGATCTGCTG
GATCGGCTCTCGGAAGTGCATCAATCAAAGCTATCGCACATGGAAAGAAA
TCAGCTAGATGGATACGCTCACCACCACTCGGATAGCTTCAGTGTCAAAG
CGCCTCGACGAGACACTCCAAAGAGTGCGGGGAAGAAAGGCAGGGACGTT
AGAGGAGGTATCGATGAGCCGATGACCGAGCACCCGCTGTCGATGGAAAA
GAAGTCATCGTCCTCACTTGCACCCTTGGATGGAGAGCGAATAGATCGAA
TGCGTGCCACTCAATCGAGCAGCATGGCGGGTTTGACGTCCTTTATCGAT
AGCGAGGCGACCAAACAGGCTGCAGACTACCAGAACCCTTCGCATGCATT
TGCCACGGCGAAGTCCTTGCCCTTGTCTGTCCCCTATGTGCACGCCCCGT
CTTTGGAGGTCCTGACAAGTATGGCTCAATATGTTTCGGAGCAAGTCATG
GCTCTAAGGCCAAAGACAGCAGCAGTGTCGGCGCTCCCGGCATGTAAAGC
CGGCGTTGTGAGTGGAGGAGGGGGAGGCGTACGAGCCACAGCGGCAGGAT
CTGTGGCACATAAGGTGTCGGAAGCCACAGCTTTGGACGGAAAGGAGGTG
AAAAGAGGGTCTGTGGTGTCTGCTATCACTTCTTCGCCTGTATCTGGCAC
TGCTACTGGCCGCACAGCCAAGCTGGAGTTGGATAGGACACGGCTATGGT
CACAGGCATTTCCCACCAGCAATCGTTGTCCTGATATCCAAGATCTGCAA
CCTCTTCTGCAGCCTCCGTTGCGCGAAGAAAAGCGGCATCGGCCACAAAA
CTCCCCGTCACCCTCCCCTCTGTCCGAGGACAACACCGAGCAACCTCTGA
AGCCATGGCAGCAGCTGCTCCAGGCACTGCAAAAGCAAATCTCATCGTCA
GTGCCCCAAAGCGACGCTTGGAATATGGTCTCTTGCCATCCCTCACACCT
TGGTGTGCCTCGCGGCTTTCCCGCCCAACGCCCTGCGCCTCCATCCTGGC
AGACAAGATCTCTACCTCAACCCCATGTTCCTCCTTTGTCGTCTGACTAC
ACTGTAAAGGGGGTCTTCCGTCCTCCTTTCGTCCCTGTCTCGGAAGCTTC
CTCCAACGAAGTCTCCATTCTTGGTCCGTCATTGCACACAAGCGCGTCTT
TCCATCACTAGGCATATCTCCATGACATGAATCACTCAAGCATTTTCTGA
CGAGTACTGTGAGGGCCTGAAGCGGCAGATCTCATGTAGTTGATATCCAA
GGGCATTGACACAAAGCAAGAGAGTTTTCTGTATATATGTGACGAACTAA
GTGATGCGGTAATTCGCTTCAAGGAAGTCCCCATTATTGGCCCGTGATCG
GACACAAAGGCGATATTCCATTACTAGGCATATTTCCATTGGTCCAATAG
ATCTTACATTTCCTGATAAATATTGCGAGGGATAGGAGCGGATGGTCTCA
TGTAGTTGATTTCCAAGAACAATGCAAAACAACGAAGCCCCCTTTTTAGA
AATAACGTCATGGACAAAAGACAGGAGCTGAAATCCCCAAAGCGCGTTGG
CCAAAGAACGGCTTTCCCGTGGATCGATATTTCAGTAGGGGTAACGGGTA
TTTGAAAAAATCCATTGAAAAACCGGTAGAGC back to topprotein sequence of rna7437 >rna7437-protein ID=rna7437-protein|Name=rna7437|organism=Nannochloropsis gaditana|type=polypeptide|length=185bp
MSDNPLTLFFPFLEKLMAHHRILSRKPSPCPLLLATTLLVSLALLPLAAG
FLLPSLPSSPAIRQGKVTTYTLLVIWTHASGTCGYSLRIAGALTDTGKSR
TGERSLAPLGRPRYLGVRVKGGTEDDDRELAAEFSRRLEDEEESLPRVPI
RKSSSPSPGGGVPQKVAQRSFATMPKTQSYNKEDG back to topmRNA from alignment at CM002471.1:586432..587409+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7437 ID=rna7437|Name=rna7437|organism=Nannochloropsis gaditana|type=mRNA|length=978bp|location=Sequence derived from alignment at CM002471.1:586432..587409+ (Nannochloropsis gaditana)
AACTACTCGTACTTTTTTTCCTgtagcagaggaagaggattcTCGCCGTC
CCACACTTCTATCGATCTTGCTCGTTGTTCTCTCCCCTTGCTGACATGTC
AGATAACCCGCTTACCTtgtttttcccttttctagAGAAACTCATGGCGC
ACCATAGAATACTGTCACGAAAGCCTTCACCATGTCCTCTCCTGCTCGCC
ACGACTTTGTTGGtctctcttgctcttctccctcttgccgCTGGTTTCCT
ACTCCCATCCTTGCCGTCCTCGCCTGCAATACGTCAGGGTAAAGTAACCA
CGTATACCCTTTTGGTGATCTGGACACATGCGTCTGGGACCTGTGGCTAT
TCCCTCCGTATCGCAGGTAcaggaatggaaagaaagcgtTGTGGCTTTCC
ATTTAAGTCGCCGTAAACCCCTACTCTCCGAGTCTGCACTGCATCCCGGC
GGGCATGTCCCTCCTGTGTTgtttccccatcccctcatCACGCTTCCTTC
CGCCGTGCATGGCAGGGGCGTTGACAGACACAGGCAAGAgcaggacgggg
gaaaggtcGCTTGCCCCGTTGGGGCGGCCTCGGTATCTGGGAGTGCGggt
caagggagggacggaggatgACGACCGGGAGCTCGCCGCCGAATTTTCCC
GGAggctggaggatgaggaggaggtgagggaggggttggaggggaacaag
ggagggagagagcgccgACGGGAGGAATGGCAGGCACCCTGGGCCTGCCG
GACGTGGAGAGGCCCGGTCgttgacctcctccccccctccctccctccct
ccctccctccctccctgcctccctcccttcctttcctctcccccccctca
gtccctcccccgtgtTCCGATCCGCaaatcttcctccccttctcccggcG
GGGGCGTCCCTCAGAAAGTTGCCCAGCGCTCCTTTGCGACAATGCCCAAG
ACTCAAAGCTACAACAAGGAGGACGGTA back to topCoding sequence (CDS) from alignment at CM002471.1:586432..587409+ >rna7437 ID=rna7437|Name=rna7437|organism=Nannochloropsis gaditana|type=CDS|length=1668bp|location=Sequence derived from alignment at CM002471.1:586432..587409+ (Nannochloropsis gaditana)
ATGTCAGATAACCCGCTTACCTtgtttttcccttttctagAGAAACTCAT
GGCGCACCATAGAATACTGTCACGAAAGCCTTCACCATGTCCTCTCCTGC
TCGCCACGACTTTGTTGGtctctcttgctcttctccctcttgccgCTGGT
TTCCTACTCCCATCCTTGCCGTCCTCGCCTGCAATACGTCAGGGTAAAGT
AACCACGTATACCCTTTTGGTGATCTGGACACATGCGTCTGGGACCTGTG
GCTATTCCCTCCGTATCGCAGGGGCGTTGACAGACACAGGCAAGAgcagg
acgggggaaaggtcGCTTGCCCCGTTGGGGCGGCCTCGGTATCTGGGAGT
GCGggtcaagggagggacggaggatgACGACCGGGAGCTCGCCGCCGAAT
TTTCCCGGAggctggaggatgaggaggagtccctcccccgtgtTCCGATC
CGCaaatcttcctccccttctcccggcGGGGGCGTCCCTCAGAAAGTTGC
CCAGCGCTCCTTTGCGACAATGCCCAAGACTCAAAGCTACAACAAGGAGG
ACGGTAATGTCAGATAACCCGCTTACCTtgtttttcccttttctagAGAA
ACTCATGGCGCACCATAGAATACTGTCACGAAAGCCTTCACCATGTCCTC
TCCTGCTCGCCACGACTTTGTTGGtctctcttgctcttctccctcttgcc
gCTGGTTTCCTACTCCCATCCTTGCCGTCCTCGCCTGCAATACGTCAGGG
TAAAGTAACCACGTATACCCTTTTGGTGATCTGGACACATGCGTCTGGGA
CCTGTGGCTATTCCCTCCGTATCGCAGGGGCGTTGACAGACACAGGCAAG
AgcaggacgggggaaaggtcGCTTGCCCCGTTGGGGCGGCCTCGGTATCT
GGGAGTGCGggtcaagggagggacggaggatgACGACCGGGAGCTCGCCG
CCGAATTTTCCCGGAggctggaggatgaggaggagtccctcccccgtgtT
CCGATCCGCaaatcttcctccccttctcccggcGGGGGCGTCCCTCAGAA
AGTTGCCCAGCGCTCCTTTGCGACAATGCCCAAGACTCAAAGCTACAACA
AGGAGGACGGTAATGTCAGATAACCCGCTTACCTtgtttttcccttttct
agAGAAACTCATGGCGCACCATAGAATACTGTCACGAAAGCCTTCACCAT
GTCCTCTCCTGCTCGCCACGACTTTGTTGGtctctcttgctcttctccct
cttgccgCTGGTTTCCTACTCCCATCCTTGCCGTCCTCGCCTGCAATACG
TCAGGGTAAAGTAACCACGTATACCCTTTTGGTGATCTGGACACATGCGT
CTGGGACCTGTGGCTATTCCCTCCGTATCGCAGGGGCGTTGACAGACACA
GGCAAGAgcaggacgggggaaaggtcGCTTGCCCCGTTGGGGCGGCCTCG
GTATCTGGGAGTGCGggtcaagggagggacggaggatgACGACCGGGAGC
TCGCCGCCGAATTTTCCCGGAggctggaggatgaggaggagtccctcccc
cgtgtTCCGATCCGCaaatcttcctccccttctcccggcGGGGGCGTCCC
TCAGAAAGTTGCCCAGCGCTCCTTTGCGACAATGCCCAAGACTCAAAGCT
ACAACAAGGAGGACGGTA back to top
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