rna7431, rna7431 (mRNA) Nannochloropsis gaditana

Overview
Namerna7431
Unique Namerna7431
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length705
Alignment locationCM002471.1:568236..569343 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101964g1.455.mrna
Orig protein idgnl|cribi|Naga_101964g1.455
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:568236..569343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101964g1gene7190Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7431rna7431-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23260.1cds7413Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7431 ID=rna7431|Name=rna7431|organism=Nannochloropsis gaditana|type=mRNA|length=705bp
AAATTTCTTGAGCCAGCGTGTGGAGGCAACATTCGGCACTCTCATGACCC
GCGACGGCAGATTTTAAGTGCGAGATGACAAGGGGTAGGGGAGGTCGGGC
TCTACAAGGTAGCCTCCCTCCTACCCTCCCTCCCTCCCTCCCTCCCTTCA
TCGATACCTCCCCGCTTCCTTTCCTTCTCTCTTCATTTGTAGGAACACGC
GCATCTTGCTATGATTCTTTTCGCGTGATGTCCCTTCAATCCTTCCTTCT
TTTCCTCCATTCCTTCCCTTCACCCTGCTTTTATCATTTCGCATACCTGT
CTCGATCCATTCGTCTTCCGTTCATCCACGCACGCTCTGCCACAAACAAC
ACAGGCGTCTTCCTTTCCTCCTTCGTCCTCCTCTCCTCTGTCCATATCCT
CTATGCTTTTTTCCTCCCTTCCTCCTCCCTCCTGCCGCTTCCATTTCCAC
CCTGTATACTACCTCTCTCCGCGACCACGGCGGGCACGCACCTTGCCAAA
CAAAACAAGGGCATACAGGCCGCTACCAAGGCCCTTTGGCGTGACATCGC
TCGTCTAAGCAAGGATCCGTCCACCCTCCCTCCCCCCTCCTCCCTTTCCT
CTCCCACCCCTCTCGTCCTGAATGAGGCGCTCTATCCGCCCACGCGCCTC
GCGCGCCTCCTGTCTCTCCAGCGGCAGCACGACCACGCGGCGGTGGATGC
GGAAA
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protein sequence of rna7431

>rna7431-protein ID=rna7431-protein|Name=rna7431|organism=Nannochloropsis gaditana|type=polypeptide|length=274bp
MIDLHNRTLPVARTAVRDVYEVALGEWREGGREGGRKGGREGAKEGGGSP
LVALLGAENAQSGFLEIITGQGDARLAFPPSSSSSSSSSSSSSLFSPSSS
SSPPRLLTPAILTLLNDDFHPAQGASLKPGNPGRILVPLANVKRWMDFHS
LSLEQRRKRLRRHIEKEGRAKGGKESRAEGGKEGVGQGGQDSSSSSPSPA
HQKKQARLTRRQSASIQGYIQRHPQARSLILSLPPSLRRDWGELGGGREG
GQEGGREGGQKGGREGGREGGSGG
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mRNA from alignment at CM002471.1:568236..569343+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7431 ID=rna7431|Name=rna7431|organism=Nannochloropsis gaditana|type=mRNA|length=1108bp|location=Sequence derived from alignment at CM002471.1:568236..569343+ (Nannochloropsis gaditana)
ataGCCCGCCCTGGCATGATCGACCTCCACAACCGGACCCTGCCAGTGGC
GCGCACGGCAGTCCGGGACGTGTACGAGGTGGCAttgggggaatggaggg
agggcgggagggagggcgggaggaagggggggagggagggcgcgaaggag
ggcggggggtctCCCTTGGTGGCGTTGTTGGGTGCGGAGAACGCGCAAAG
TGGGTTCTTGGAAATCATCACCGGACAAGGAGATGCTCGACtggcctttc
ctccgtcttcctcctcctcctcctcctcctcctcctcctcctcccttttc
tccccttcttcttcctcctcccctccccgtctacTCACGCCCGCTATCCT
CACGCTCTTGAATGACGACTTCCATCCTGCTCAGgtgagagcgagggagg
gagggaggctgggagggagggatgtaaCGGACGAACGGATGAAGCACGCT
TCGTAGGGAGGCGACACATTTTCCAATCAAATTGGAATCCTTCCctgact
ccctcctcccctccctccccctccttccctgactccctccctccctccct
tccttcctcaccctcaGGGCGCCTCTCTCAAACCAGGAAATCCGGGTAGG
ATTTTAGTCCCACTCGCCAATGTCAAACGGTGGATGGActtccattccct
ctccttggaaCAGCGTCGTAAACGCCTTCGGAGGCacattgagaaggagg
gaagggcaaagggagggaaggagagtcgggcagagggagggaaggagggc
gtgggacagggcgggcaggatagctcttcctcgtcacccTCCCCGGCCCA
CCAAAAAAAGCAGGCGCGTTTGACAAGGAGACAGAGTGCCTCCATCCAGG
GATATATACAGCGACATCCCCAGGCGCGAAGCCtcattctctccctccct
ccctccctccgccgggacTGGGGCGAgctgggcggagggagggagggagg
gcaggagggaggaagggagggagggcagaagggagggagggagggaggga
gagagggaggggtgagtgcttggaaagagaagcaTGTGTGGGTGTTGGAG
CTGGCGATAGAGATGGGCCTGTCGCCCAAACAGCTCCACGCAGCAGTCAG
GAGGATGA
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Coding sequence (CDS) from alignment at CM002471.1:568236..569343+

>rna7431 ID=rna7431|Name=rna7431|organism=Nannochloropsis gaditana|type=CDS|length=2475bp|location=Sequence derived from alignment at CM002471.1:568236..569343+ (Nannochloropsis gaditana)
ATGATCGACCTCCACAACCGGACCCTGCCAGTGGCGCGCACGGCAGTCCG
GGACGTGTACGAGGTGGCAttgggggaatggagggagggcgggagggagg
gcgggaggaagggggggagggagggcgcgaaggagggcggggggtctCCC
TTGGTGGCGTTGTTGGGTGCGGAGAACGCGCAAAGTGGGTTCTTGGAAAT
CATCACCGGACAAGGAGATGCTCGACtggcctttcctccgtcttcctcct
cctcctcctcctcctcctcctcctcctcccttttctccccttcttcttcc
tcctcccctccccgtctacTCACGCCCGCTATCCTCACGCTCTTGAATGA
CGACTTCCATCCTGCTCAGGGCGCCTCTCTCAAACCAGGAAATCCGGGTA
GGATTTTAGTCCCACTCGCCAATGTCAAACGGTGGATGGActtccattcc
ctctccttggaaCAGCGTCGTAAACGCCTTCGGAGGCacattgagaagga
gggaagggcaaagggagggaaggagagtcgggcagagggagggaaggagg
gcgtgggacagggcgggcaggatagctcttcctcgtcacccTCCCCGGCC
CACCAAAAAAAGCAGGCGCGTTTGACAAGGAGACAGAGTGCCTCCATCCA
GGGATATATACAGCGACATCCCCAGGCGCGAAGCCtcattctctccctcc
ctccctccctccgccgggacTGGGGCGAgctgggcggagggagggaggga
gggcaggagggaggaagggagggagggcagaagggagggagggagggagg
gagagagggagggTCAGGAGGATGAATGATCGACCTCCACAACCGGACCC
TGCCAGTGGCGCGCACGGCAGTCCGGGACGTGTACGAGGTGGCAttgggg
gaatggagggagggcgggagggagggcgggaggaagggggggagggaggg
cgcgaaggagggcggggggtctCCCTTGGTGGCGTTGTTGGGTGCGGAGA
ACGCGCAAAGTGGGTTCTTGGAAATCATCACCGGACAAGGAGATGCTCGA
Ctggcctttcctccgtcttcctcctcctcctcctcctcctcctcctcctc
ctcccttttctccccttcttcttcctcctcccctccccgtctacTCACGC
CCGCTATCCTCACGCTCTTGAATGACGACTTCCATCCTGCTCAGGGCGCC
TCTCTCAAACCAGGAAATCCGGGTAGGATTTTAGTCCCACTCGCCAATGT
CAAACGGTGGATGGActtccattccctctccttggaaCAGCGTCGTAAAC
GCCTTCGGAGGCacattgagaaggagggaagggcaaagggagggaaggag
agtcgggcagagggagggaaggagggcgtgggacagggcgggcaggatag
ctcttcctcgtcacccTCCCCGGCCCACCAAAAAAAGCAGGCGCGTTTGA
CAAGGAGACAGAGTGCCTCCATCCAGGGATATATACAGCGACATCCCCAG
GCGCGAAGCCtcattctctccctccctccctccctccgccgggacTGGGG
CGAgctgggcggagggagggagggagggcaggagggaggaagggagggag
ggcagaagggagggagggagggagggagagagggagggTCAGGAGGATGA
ATGATCGACCTCCACAACCGGACCCTGCCAGTGGCGCGCACGGCAGTCCG
GGACGTGTACGAGGTGGCAttgggggaatggagggagggcgggagggagg
gcgggaggaagggggggagggagggcgcgaaggagggcggggggtctCCC
TTGGTGGCGTTGTTGGGTGCGGAGAACGCGCAAAGTGGGTTCTTGGAAAT
CATCACCGGACAAGGAGATGCTCGACtggcctttcctccgtcttcctcct
cctcctcctcctcctcctcctcctcctcccttttctccccttcttcttcc
tcctcccctccccgtctacTCACGCCCGCTATCCTCACGCTCTTGAATGA
CGACTTCCATCCTGCTCAGGGCGCCTCTCTCAAACCAGGAAATCCGGGTA
GGATTTTAGTCCCACTCGCCAATGTCAAACGGTGGATGGActtccattcc
ctctccttggaaCAGCGTCGTAAACGCCTTCGGAGGCacattgagaagga
gggaagggcaaagggagggaaggagagtcgggcagagggagggaaggagg
gcgtgggacagggcgggcaggatagctcttcctcgtcacccTCCCCGGCC
CACCAAAAAAAGCAGGCGCGTTTGACAAGGAGACAGAGTGCCTCCATCCA
GGGATATATACAGCGACATCCCCAGGCGCGAAGCCtcattctctccctcc
ctccctccctccgccgggacTGGGGCGAgctgggcggagggagggaggga
gggcaggagggaggaagggagggagggcagaagggagggagggagggagg
gagagagggagggTCAGGAGGATGA
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Synonyms
Publications